blaOXA-400 encodes an OXA/class D beta-lactamase in Acinetobacter baumannii. UniProt/CARD identify this entry as a beta-lactamase antibiotic-inactivation determinant; the expected core molecular function is beta-lactamase activity, not merely penicillin binding. UniProt names the protein 'Beta-lactamase OXA-400' (accession A0A097A0C1).
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
| GO:0008658 penicillin binding | IEA GO_REF:0000002 | MODIFY | Summary: The existing MF term is directionally correct but less informative than the family-specific AMR activity beta-lactamase activity. Reason: Replace the broad or over-specific electronic term 'penicillin binding' with beta-lactamase activity based on UniProt/CARD determinant identity and the curated ARO->GO mapping. Proposed replacements: beta-lactamase activity Supporting Evidence: file:genes/ACIBA/blaOXA-400/blaOXA-400-uniprot.txt DR CARD; ARO:3001586; OXA-400; ARO:0001004; antibiotic inactivation. |
| GO:0008800 beta-lactamase activity | RCA file:projects/ANTIMICROBIAL_RESISTANCE/aro2go.sssom.yaml | NEW | Summary: NEW candidate annotation from the curated ARO->GO mapping: beta-lactamase activity. Reason: The UniProt record cross-references a CARD/ARO AMR determinant, and the curated ARO->GO mapping projects the family-specific molecular function beta-lactamase activity. This focused draft accepts the candidate as a curator lead for this AMR determinant. Supporting Evidence: file:projects/ANTIMICROBIAL_RESISTANCE/data/candidate_new_annotations.tsv A0A097A0C1 ARO:3001586 ARO:3000001 narrower RO:0002327 GO:0008800 beta-lactamase activity file:genes/ACIBA/blaOXA-400/blaOXA-400-uniprot.txt DR CARD; ARO:3001586; OXA-400; ARO:0001004; antibiotic inactivation. |
| GO:0046677 response to antibiotic | RCA file:projects/ANTIMICROBIAL_RESISTANCE/aro2go.sssom.yaml | NEW | Summary: NEW process annotation: blaOXA-400 is an AMR determinant involved in antibiotic response/resistance. Reason: CARD/ARO identity places this gene in an antimicrobial-resistance determinant family; response to antibiotic is the appropriate high-level GO biological process for the resistance role. Supporting Evidence: file:genes/ACIBA/blaOXA-400/blaOXA-400-uniprot.txt DR CARD; ARO:3001586; OXA-400; ARO:0001004; antibiotic inactivation. |
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Download this section (compressed HTML)Q: Is the ARO-derived beta-lactamase activity annotation sufficiently specific for blaOXA-400, or is a narrower substrate/site-specific GO term warranted?
Experiment: Biochemically assay purified blaOXA-400 against representative antibiotic substrates for the inferred AMR family and measure loss of drug activity or target modification.
Type: in vitro enzyme assay
Focused AMR batch review. UniProt accession: A0A097A0C1. Source organism: Acinetobacter baumannii.
DR CARD; ARO:3001586; OXA-400; ARO:0001004; antibiotic inactivation.projects/ANTIMICROBIAL_RESISTANCE/data/candidate_new_annotations.tsv and projects/ANTIMICROBIAL_RESISTANCE/aro2go.sssom.yaml.Loading supporting contentβ¦
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