ProtNLM2 External predictions
View prediction review YAML Β· A0A2G9RZF1-protnlm-predictions-review.yaml Β· Review status: COMPLETE
A0A2G9RZF1 is a single-CUB fragment from a fragmented Aquarana catesbeiana draft gene model. The ProtNLM2 single-fertilization prediction is refuted for the sequence supplied to the model, because that sequence lacks the S1 protease domain required for an ovochymase-like egg-envelope protease; extracellular-region localization remains plausible but unresolved for the exact short accession.
Source documents: genes/AQUCT/A0A2G9RZF1/A0A2G9RZF1-uniprot.txt Β· genes/AQUCT/A0A2G9RZF1/A0A2G9RZF1-goa.tsv Β· publications/PMID_8510165.md Β· genes/AQUCT/A0A2G9RZF1/A0A2G9RZF1-ai-review.yaml Β· genes/AQUCT/A0A2G9RZF1/A0A2G9RZF1-hypotheses/core-function-1-go-0005201/openscientist.md Β· genes/AQUCT/A0A2G9RZF1/A0A2G9RZF1-hypotheses/prediction-ovochymase-fertilization/openscientist.md
Review score: 2 = concordant with evidence; 1 = uncertain; 0 = discordant with evidence. This is an assessment score, not a model probability.
- file:AQUCT/A0A2G9RZF1/A0A2G9RZF1-uniprot.txt: "ID A0A2G9RZF1_AQUCT Unreviewed; 156 AA. ... DR InterPro; IPR000859; CUB_dom. ... DR PANTHER; PTHR24251:SF37; CUB DOMAIN-CONTAINING PROTEIN; 1. ... FT DOMAIN 31..147 ... FT /note="CUB""
- PMID:8510165: "31 copies of an extracellular domain, here called CUB"
- file:AQUCT/A0A2G9RZF1/A0A2G9RZF1-hypotheses/prediction-ovochymase-fertilization/openscientist.md: "with no serine protease domain whatsoever and no catalytic triad."
- file:AQUCT/A0A2G9RZF1/A0A2G9RZF1-hypotheses/core-function-1-go-0005201/openscientist.md: "The three fragmented ORFs on scaffold KV928989 (156 + 228 + 250 = 634 aa combined) represent portions of one of these ~1,000 aa genes, with the N-terminal protease domain and additional domains falling in assembly gaps."
- file:AQUCT/A0A2G9RZF1/A0A2G9RZF1-ai-review.yaml: "A0A2G9RZF1 is a gene prediction fragment from the fragmented draft genome assembly of Aquarana catesbeiana"
- file:AQUCT/A0A2G9RZF1/A0A2G9RZF1-uniprot.txt: "ID A0A2G9RZF1_AQUCT Unreviewed; 156 AA. ... DR InterPro; IPR000859; CUB_dom. ... DR PANTHER; PTHR24251:SF37; CUB DOMAIN-CONTAINING PROTEIN; 1. ... FT DOMAIN 31..147 ... FT /note="CUB""
- PMID:8510165: "31 copies of an extracellular domain, here called CUB"
- file:AQUCT/A0A2G9RZF1/A0A2G9RZF1-hypotheses/prediction-ovochymase-fertilization/openscientist.md: "an extracellular-region CC term could be a *lead* if a signal peptide is confirmed, but this was not tested and should not be asserted"
- file:AQUCT/A0A2G9RZF1/A0A2G9RZF1-ai-review.yaml: "The fragment contains a single CUB domain (residues 31-147) that mediates protein-protein interactions in the extracellular space."