A0A2G9RZF1

UniProt ID: A0A2G9RZF1
Organism: Aquarana catesbeiana
Review Status: DRAFT
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Gene Description

A0A2G9RZF1 (ORF AB205_0007200) is a 156-residue fragmentary gene model from the 2017 draft genome of the American bullfrog. It corresponds to the C-terminal CUB domain (CUB5) of tolloid-like protein 1 (TLL1). Residues 30-156 are 126 of 127 identical to the last 127 residues of the complete bullfrog TLL1 model (XP_073462190.1, 1005 aa), and identity to other tolloids follows the TLL1 orthogroup (Xenopus TLL1 > mammalian TLL1 > BMP1/TLL2). The fragment lacks the signal peptide, the prodomain, the astacin-like zinc metalloprotease domain with its catalytic residues, CUB1-CUB4 and both EGF-like domains, so on its own it has no catalytic activity. The complete TLL1 gene product is a secreted BMP-1/tolloid-family zinc metalloprotease. In mammals it processes procollagen C-propeptides and cleaves the BMP antagonist chordin. Its C-terminal CUB domains are extracellular protein-interaction modules that bind calcium.

Core Functions

Gene-level function of bullfrog TLL1, of which A0A2G9RZF1 is a fragment covering the C-terminal CUB5 domain only. The complete TLL1 product is a secreted BMP-1/tolloid-family zinc metalloendopeptidase. Its mammalian ortholog processes procollagen C-propeptides and cleaves chordin. The 156-aa fragment lacks the astacin protease domain and cannot carry out this activity itself. It retains only an extracellular CUB protein-interaction module. The assignment rests on TLL1 orthology (PANTHER PTHR24251:SF45 orthogroup with human, mouse and Xenopus TLL1; 99% identity to the complete bullfrog TLL1 model) and on the metalloendopeptidase assertion at the PTHR24251 PAINT root. It should not be read as an activity of this UniProt entry.

Cellular Locations:
Supporting Evidence:
  • file:AQUCT/A0A2G9RZF1/A0A2G9RZF1-bioinformatics/RESULTS.md
    A0A2G9RZF1 residues 30-156 are therefore the last 127 residues (CUB5) of bullfrog TLL1.
  • file:AQUCT/A0A2G9RZF1/A0A2G9RZF1-bioinformatics/RESULTS.md
    The fragment has no catalytic activity of its own. Any function annotation belongs to the TLL1 gene.
  • PMID:10479448
    mTLL-1 is shown to specifically process procollagen C-propeptides at the physiologically relevant site
  • PMID:10479448
    BMP-1 and mTLL-1 are shown to cleave Chordin
  • PMID:21954942
    CUB domains are 110-residue protein motifs exhibiting a β-sandwich fold and mediating protein-protein interactions in various extracellular proteins
  • file:AQUCT/A0A2G9RZF1/A0A2G9RZF1-uniprot.txt
    DR InterPro; IPR000859; CUB_dom.

References

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Suggested Questions for Experts

Q: Should UniProt replace or merge the three draft-assembly fragments on scaffold KV928989 (A0A2G9RZF1, A0A2G9RZH1, A0A2G9RZI6) with the complete TLL1 gene model from the chromosome-level assembly (XP_073462190.1)? Only the complete model would warrant metalloendopeptidase annotation.

Q: Is PANTHER subfamily assignment for single-domain fragments of multi-domain tolloids reliable? This entry falls into the heterogeneous SF37 bin rather than the TLL1-containing SF45, and the neighbouring fragments of the same gene are split between SF45 and SF53.

Suggested Experiments

Experiment: Express full-length bullfrog TLL1 (XP_073462190.1) recombinantly and assay cleavage of procollagen I and chordin. Use a catalytic-glutamate mutant as a control, and include a CUB5-deletion variant to test the contribution of the domain represented by A0A2G9RZF1.

Hypothesis: Bullfrog TLL1, the gene this fragment belongs to, has procollagen C-proteinase and chordinase activity like mammalian TLL-1.

Type: biochemistry

External Prediction Reviews

These computational predictions are reviewed separately from the GOA annotation set used for this review. The assessments below are from this project and do not constitute official GO annotations or endorsement by GO/UniProt. They are not included in the existing annotation review above.

ProtNLM2 External predictions

View prediction review YAML · A0A2G9RZF1-protnlm-predictions-review.yaml · Review status: COMPLETE

A0A2G9RZF1 is a 156-residue fragmentary gene model from the 2017 Aquarana catesbeiana draft genome whose residues 30-156 are the C-terminal CUB5 domain of bullfrog tolloid-like protein 1 (TLL1), a secreted BMP-1/tolloid-family zinc metalloprotease. The ProtNLM2 single-fertilization prediction is unresolved. Its ovochymase-like basis is wrong, because neither the fragment nor the TLL1 gene it belongs to is an egg-envelope serine protease, but no evidence shows or excludes another role for TLL1 in fertilization. The extracellular-region prediction is true of the complete TLL1 product but not of this accession, which lacks the TLL1 signal peptide.

Source documents: genes/AQUCT/A0A2G9RZF1/A0A2G9RZF1-uniprot.txt · genes/AQUCT/A0A2G9RZF1/A0A2G9RZF1-goa.tsv · publications/PMID_8510165.md · genes/AQUCT/A0A2G9RZF1/A0A2G9RZF1-ai-review.yaml · genes/AQUCT/A0A2G9RZF1/A0A2G9RZF1-bioinformatics/RESULTS.md · publications/PMID_39880331.md · interpro/panther/PTHR24251/PTHR24251-review.yaml · genes/AQUCT/A0A2G9RZF1/A0A2G9RZF1-hypotheses/core-function-1-go-0005201/openscientist.md · genes/AQUCT/A0A2G9RZF1/A0A2G9RZF1-hypotheses/prediction-ovochymase-fertilization/openscientist.md

Review score: 2 = concordant with evidence; 1 = uncertain; 0 = discordant with evidence. This is an assessment score, not a model probability.

GO:0007338 single fertilization GO_BP
UNC — Uncertain Review score: 1/2
Prediction method: ProtNLM2 · Version: UniProt 2024_06 pilot
Review rationale: The target is a 156-residue fragment of bullfrog TLL1: residues 30-156 match the last 127 residues (CUB5) of the complete bullfrog TLL1 model at 126/127 identity, and identity to other tolloids follows the TLL1 orthogroup. The fragment carries only a CUB domain, with no S1 serine-protease domain and no His-Asp-Ser triad. That excludes the ovochymase-like egg-envelope protease mechanism the prediction implies, for both the fragment and the gene. The complete TLL1 product is an astacin-type metalloprotease that processes procollagen C-propeptides and cleaves chordin, and the PTHR24251 family review finds that single fertilization is not a family-wide process. These facts exclude the predicted mechanism, not every way TLL1 could take part in fertilization. TLL1 has no known mechanism of participation in fertilization, so no missing feature can be shown to be required, and a non-catalytic CUB-mediated binding or extracellular-matrix role at the egg surface is neither shown nor excluded. PubMed searches for tolloid-like proteins in fertilization and for bullfrog tolloids returned no reports either way. The evidence is an absence of support, not a positive refutation, so the prediction is uncertain.
Supporting Evidence:
GO:0005576 extracellular region GO_CC
NPI — Nonparalog incorrect Review score: 0/2
Prediction method: ProtNLM2 · Version: UniProt 2024_06 pilot
DOMAIN ARCHITECTURE MISMATCH
Review rationale: The sequence ProtNLM2 was given is a 156-residue fragment of bullfrog TLL1. Residues 30-156 are the C-terminal CUB5 domain, at 126/127 identity to the last 127 residues of the complete 1005-aa bullfrog TLL1 model, and residues 1-29 align to no tolloid model. The fragment lacks the TLL1 N-terminal signal peptide, the feature that routes the complete product into the secretory pathway and so to the extracellular region. Its UniProt record has no signal-peptide or transmembrane feature, only the CUB domain at 31-147. Extracellular region is true of the complete TLL1 product (human TLL1 activity is measured in the extracellular medium of transfected cells, and PANTHER places the term at the tolloid node), but the product encoded by this accession has no secretion signal, so the location is not supported for this sequence. GOA has no annotation for this accession.
Supporting Evidence:

Deep Research

Falcon

(A0A2G9RZF1-deep-research-falcon.md)

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OpenScientist

(A0A2G9RZF1-hypotheses/core-function-1-go-0005201/openscientist.md)

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OpenScientist

(A0A2G9RZF1-hypotheses/prediction-ovochymase-fertilization/openscientist.md)

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📚 Additional Documentation

Notes

(A0A2G9RZF1-notes.md)

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Bioinformatics Results

(RESULTS.md)

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📄 View Raw YAML

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