ProtNLM2 External predictions
View prediction review YAML · A0A2G9RZF1-protnlm-predictions-review.yaml · Review status: COMPLETE
A0A2G9RZF1 is a 156-residue fragmentary gene model from the 2017 Aquarana catesbeiana draft genome whose residues 30-156 are the C-terminal CUB5 domain of bullfrog tolloid-like protein 1 (TLL1), a secreted BMP-1/tolloid-family zinc metalloprotease. The ProtNLM2 single-fertilization prediction is unresolved. Its ovochymase-like basis is wrong, because neither the fragment nor the TLL1 gene it belongs to is an egg-envelope serine protease, but no evidence shows or excludes another role for TLL1 in fertilization. The extracellular-region prediction is true of the complete TLL1 product but not of this accession, which lacks the TLL1 signal peptide.
Source documents: genes/AQUCT/A0A2G9RZF1/A0A2G9RZF1-uniprot.txt · genes/AQUCT/A0A2G9RZF1/A0A2G9RZF1-goa.tsv · publications/PMID_8510165.md · genes/AQUCT/A0A2G9RZF1/A0A2G9RZF1-ai-review.yaml · genes/AQUCT/A0A2G9RZF1/A0A2G9RZF1-bioinformatics/RESULTS.md · publications/PMID_39880331.md · interpro/panther/PTHR24251/PTHR24251-review.yaml · genes/AQUCT/A0A2G9RZF1/A0A2G9RZF1-hypotheses/core-function-1-go-0005201/openscientist.md · genes/AQUCT/A0A2G9RZF1/A0A2G9RZF1-hypotheses/prediction-ovochymase-fertilization/openscientist.md
Review score: 2 = concordant with evidence; 1 = uncertain; 0 = discordant with evidence. This is an assessment score, not a model probability.
- file:AQUCT/A0A2G9RZF1/A0A2G9RZF1-uniprot.txt: "ID A0A2G9RZF1_AQUCT Unreviewed; 156 AA. ... DR InterPro; IPR000859; CUB_dom. ... DR PANTHER; PTHR24251:SF37; CUB DOMAIN-CONTAINING PROTEIN; 1. ... FT DOMAIN 31..147 ... FT /note="CUB""
- PMID:8510165: "31 copies of an extracellular domain, here called CUB"
- file:AQUCT/A0A2G9RZF1/A0A2G9RZF1-hypotheses/prediction-ovochymase-fertilization/openscientist.md: "with no serine protease domain whatsoever and no catalytic triad."
- file:AQUCT/A0A2G9RZF1/A0A2G9RZF1-hypotheses/prediction-ovochymase-fertilization/openscientist.md: "However, none of these non-catalytic possibilities is specifically evidenced for A0A2G9RZF1"
- file:AQUCT/A0A2G9RZF1/A0A2G9RZF1-hypotheses/core-function-1-go-0005201/openscientist.md: "The three fragmented ORFs on scaffold KV928989 (156 + 228 + 250 = 634 aa combined) represent portions of one of these ~1,000 aa genes, with the N-terminal protease domain and additional domains falling in assembly gaps."
- file:AQUCT/A0A2G9RZF1/A0A2G9RZF1-ai-review.yaml: "is a 156-residue fragmentary gene model from the 2017 draft genome of the American bullfrog"
- file:AQUCT/A0A2G9RZF1/A0A2G9RZF1-bioinformatics/RESULTS.md: "A0A2G9RZF1 residues 30-156 are therefore the last 127 residues (CUB5) of bullfrog TLL1."
- PMID:10479448: "mTLL-1 is shown to specifically process procollagen C-propeptides at the physiologically relevant site"
- file:AQUCT/A0A2G9RZF1/A0A2G9RZF1-bioinformatics/RESULTS.md: "A0A2G9RZF1 residues 30-156 are therefore the last 127 residues (CUB5) of bullfrog TLL1."
- file:AQUCT/A0A2G9RZF1/A0A2G9RZF1-bioinformatics/RESULTS.md: "Residues 1-29 do not align to either model."
- file:AQUCT/A0A2G9RZF1/A0A2G9RZF1-bioinformatics/RESULTS.md: "signal peptide, the prodomain, the astacin-like zinc metalloprotease domain"
- file:AQUCT/A0A2G9RZF1/A0A2G9RZF1-uniprot.txt: "FT DOMAIN 31..147"
- PMID:39880331: "An activity assay in the extracellular media of the HEK293-transfected cells"
- PMID:39880331: "TLL1 encodes an extracellular metalloprotease regulating extracellular matrix composition and maintenance."