snapshot_type: uniprot_record_evidence_extract archive: repository: https://github.com/ai4curation/uniprot-orphan-analysis commit: f6a331cb47f61256ad070bbaa75567094ef64e8a extraction: Original source line ranges with two context lines; not complete records. Structured fields are selected from the same archived snapshots. Sequence values are replaced by lengths and SHA-256 digests. sources: - url: https://rest.uniprot.org/uniprotkb/Q945B5.json retrieved_at: '2026-10-18T23:39:43.125242+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/uniprotkb/Q9ZTA2.json retrieved_at: '2026-10-18T23:39:43.291025+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/proteomes/UP000006548.json retrieved_at: '2026-10-18T23:39:43.452840+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/Q945B5?format=txt&versions=46 retrieved_at: '2026-10-18T23:39:45.836753+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/Q945B5?format=txt&versions=59 retrieved_at: '2026-10-18T23:39:47.827806+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/Q945B5?format=txt&versions=68 retrieved_at: '2026-10-18T23:39:50.135899+00:00' uniprot_release: '2026_03' observations: primary_accession: Q945B5 alternative_accession: Q9ZTA2 sequence_identical: false primary_sequence_length: 432 alternative_sequence_length: 399 shared_uniparc_id: null same_taxon: true reference_proteome: UP000006548 proteome_is_reference: true proteome_taxon_matches: true primary_in_reference_proteome: false alternative_in_reference_proteome: true searched_reference_proteomes: - UP000006548 primary_in_any_reference_proteome: false sampled_history_versions: - 46 - 59 - 68 sampled_versions_with_proteome_links: [] current_records: - primaryAccession: Q945B5 entryType: UniProtKB reviewed (Swiss-Prot) entryAudit: firstPublicDate: '2013-10-16' lastAnnotationUpdateDate: '2026-09-02' lastSequenceUpdateDate: '2001-12-01' entryVersion: 71 sequenceVersion: 1 genes: - geneName: value: AOP2 organism: scientificName: Arabidopsis thaliana taxonId: 3702 sequence: length: 432 sha256: d7397203fa2029cb15368fc789b4c2e95dfed770971804bde0e0f6d41d007732 uniProtKBCrossReferences: [] - primaryAccession: Q9ZTA2 entryType: UniProtKB reviewed (Swiss-Prot) entryAudit: firstPublicDate: '2013-10-16' lastAnnotationUpdateDate: '2026-09-02' lastSequenceUpdateDate: '1999-05-01' entryVersion: 114 sequenceVersion: 1 genes: - geneName: value: AOP2 orderedLocusNames: - value: At4g03060 orfNames: - value: T4I9.6 organism: scientificName: Arabidopsis thaliana taxonId: 3702 sequence: length: 399 sha256: 4eca5ead3fcd448683ce45b5667a2ad7b5f5608ad2932a03ed5da4eb2a975853 uniProtKBCrossReferences: - database: Proteomes id: UP000006548 properties: - key: Component value: Chromosome 4 reference_proteomes: - id: UP000006548 proteomeType: Reference proteome taxonomy: scientificName: Arabidopsis thaliana commonName: Mouse-ear cress taxonId: 3702 mnemonic: ARATH unisave_records: - entry_version: 46 url: https://rest.uniprot.org/unisave/Q945B5?format=txt&versions=46 entry_date: 24-JUN-2015, entry version 46. proteomes: [] reference_proteome_keyword: false record_text: | CC -!- CAUTION: AOP1, AOP2 and AOP3 are found in tandem and inverted CC duplications on chromosome IV and encode 2-oxoglutarate-dependent CC dioxygenases involved in glucosinolates biosynthesis. In cv. CC Columbia, AOP2 (AC Q9ZTA2) cDNA contains a 5-bp deletion that CC leads to a non-functional protein and AOP3 (AC Q9ZTA1) is not CC expressed. The functional and expressed alleles for AOP2 (AC CC Q945B5) and AOP3 (AC Q945B4) are found in cv. Cvi and cv. CC Landsberg erecta, respectively. No ecotype coexpresses both AOP2 CC and AOP3 genes. The catalytic role of AOP1 is still uncertain CC (PubMed:11251105). {ECO:0000305|PubMed:11251105}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- - entry_version: 59 url: https://rest.uniprot.org/unisave/Q945B5?format=txt&versions=59 entry_date: 26-FEB-2020, entry version 59. proteomes: [] reference_proteome_keyword: false record_text: | CC -!- CAUTION: AOP1, AOP2 and AOP3 are found in tandem and inverted CC duplications on chromosome IV and encode 2-oxoglutarate-dependent CC dioxygenases involved in glucosinolates biosynthesis. In cv. Columbia, CC AOP2 (AC Q9ZTA2) cDNA contains a 5-bp deletion that leads to a non- CC functional protein and AOP3 (AC Q9ZTA1) is not expressed. The CC functional and expressed alleles for AOP2 (AC Q945B5) and AOP3 (AC CC Q945B4) are found in cv. Cvi and cv. Landsberg erecta, respectively. No CC ecotype coexpresses both AOP2 and AOP3 genes. The catalytic role of CC AOP1 is still uncertain (PubMed:11251105). CC {ECO:0000305|PubMed:11251105}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- - entry_version: 68 url: https://rest.uniprot.org/unisave/Q945B5?format=txt&versions=68 entry_date: 27-NOV-2024, entry version 68. proteomes: [] reference_proteome_keyword: false record_text: | CC -!- CAUTION: AOP1, AOP2 and AOP3 are found in tandem and inverted CC duplications on chromosome IV and encode 2-oxoglutarate-dependent CC dioxygenases involved in glucosinolates biosynthesis. In cv. Columbia, CC AOP2 (AC Q9ZTA2) cDNA contains a 5-bp deletion that leads to a non- CC functional protein and AOP3 (AC Q9ZTA1) is not expressed. The CC functional and expressed alleles for AOP2 (AC Q945B5) and AOP3 (AC CC Q945B4) are found in cv. Cvi and cv. Landsberg erecta, respectively. No CC ecotype coexpresses both AOP2 and AOP3 genes. The catalytic role of CC AOP1 is still uncertain (PubMed:11251105). CC {ECO:0000305|PubMed:11251105}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- archived_sources: - path: genes/ARATH/AOP2/AOP2-record-evidence.yaml url: https://github.com/ai4curation/uniprot-orphan-analysis/blob/f6a331cb47f61256ad070bbaa75567094ef64e8a/genes/ARATH/AOP2/AOP2-record-evidence.yaml sha256: 3031ff22cef524c5a44d8ebe17c6e74d6c55ea3fdacd33f6a9e140e9344f333b excerpts: - start_line: 26 end_line: 38 text: |2 alternative_sequence_length: 399 shared_uniparc_id: null same_taxon: true reference_proteome: UP000006548 proteome_is_reference: true proteome_taxon_matches: true primary_in_reference_proteome: false alternative_in_reference_proteome: true searched_reference_proteomes: - UP000006548 primary_in_any_reference_proteome: false sampled_history_versions: - 46 - start_line: 120 end_line: 125 text: |2 value: AOP1, AOP2 and AOP3 are found in tandem and inverted duplications on chromosome IV and encode 2-oxoglutarate-dependent dioxygenases involved in glucosinolates biosynthesis. In cv. Columbia, AOP2 (AC Q9ZTA2) cDNA contains a 5-bp deletion that leads to a non-functional protein and AOP3 (AC Q9ZTA1) is not expressed. The functional and expressed alleles for AOP2 (AC Q945B5) and AOP3 (AC Q945B4) are found in cv. Cvi and cv. Landsberg erecta, respectively. No ecotype coexpresses both AOP2 and AOP3 genes. The catalytic role of AOP1 is still uncertain (PubMed:11251105) - start_line: 487 end_line: 492 text: |2 value: AOP1, AOP2 and AOP3 are found in tandem and inverted duplications on chromosome IV and encode 2-oxoglutarate-dependent dioxygenases involved in glucosinolates biosynthesis. In cv. Columbia, AOP2 (AC Q9ZTA2) cDNA contains a 5-bp deletion that leads to a non-functional protein and AOP3 (AC Q9ZTA1) is not expressed. The functional and expressed alleles for AOP2 (AC Q945B5) and AOP3 (AC Q945B4) are found in cv. Cvi and cv. Landsberg erecta, respectively. No ecotype coexpresses both AOP2 and AOP3 genes. The catalytic role of AOP1 is still uncertain (PubMed:11251105) - start_line: 2100 end_line: 2105 text: | - entry_version: 46 url: https://rest.uniprot.org/unisave/Q945B5?format=txt&versions=46 entry_date: 24-JUN-2015, entry version 46. proteomes: [] reference_proteome_keyword: false record_text: | - start_line: 2195 end_line: 2200 text: | - entry_version: 59 url: https://rest.uniprot.org/unisave/Q945B5?format=txt&versions=59 entry_date: 26-FEB-2020, entry version 59. proteomes: [] reference_proteome_keyword: false record_text: | - start_line: 2238 end_line: 2242 text: |2 CC AOP2 (AC Q9ZTA2) cDNA contains a 5-bp deletion that leads to a non- CC functional protein and AOP3 (AC Q9ZTA1) is not expressed. The CC functional and expressed alleles for AOP2 (AC Q945B5) and AOP3 (AC CC Q945B4) are found in cv. Cvi and cv. Landsberg erecta, respectively. No CC ecotype coexpresses both AOP2 and AOP3 genes. The catalytic role of - start_line: 2294 end_line: 2299 text: | - entry_version: 68 url: https://rest.uniprot.org/unisave/Q945B5?format=txt&versions=68 entry_date: 27-NOV-2024, entry version 68. proteomes: [] reference_proteome_keyword: false record_text: | - start_line: 2337 end_line: 2341 text: |2 CC AOP2 (AC Q9ZTA2) cDNA contains a 5-bp deletion that leads to a non- CC functional protein and AOP3 (AC Q9ZTA1) is not expressed. The CC functional and expressed alleles for AOP2 (AC Q945B5) and AOP3 (AC CC Q945B4) are found in cv. Cvi and cv. Landsberg erecta, respectively. No CC ecotype coexpresses both AOP2 and AOP3 genes. The catalytic role of - path: genes/ARATH/AOP2/AOP2-bioinformatics/reference-counterparts/comparison.yaml url: https://github.com/ai4curation/uniprot-orphan-analysis/blob/f6a331cb47f61256ad070bbaa75567094ef64e8a/genes/ARATH/AOP2/AOP2-bioinformatics/reference-counterparts/comparison.yaml sha256: 02041f5e56d1c00330342b74d9b0bd903f97252d62df31b5fb5f8278f6f0d081 excerpts: - start_line: 25 end_line: 29 text: |2 - -v - '1' target_sequence_count: 39272 query_sha256: e3ea1beb7b2c939b554f512352a6a09ffc55e2f0a6dc7a27962ceada8103314e targets_sha256: 63edb51070a0f51cfce737f0ea84b186f2b511a5b7820a694139a04b30607464 - start_line: 44 end_line: 48 text: |2 sha256: 63edb51070a0f51cfce737f0ea84b186f2b511a5b7820a694139a04b30607464 detailed_alignment_limit: 10 candidate_count: 106 candidates: - accession: Q9ZTA2 - start_line: 52 end_line: 64 text: |2 bit_score: 761.0 global_score: 1983.5 query_length: 432 target_length: 399 alignment_columns: 432 identities: 390 mismatches: 9 gap_columns: 33 identity_percent: 90.2778 query_coverage_percent: 92.3611 target_coverage_percent: 100.0 substitutions: - query_position: 105 comparison: provenance: query_accession: Q945B5 run_at: '2026-10-18T23:35:56.110092+00:00' biopython_version: '1.85' mmseqs_version: 18-8cc5c command: - mmseqs - easy-search - genes/ARATH/AOP2/AOP2-bioinformatics/reference-counterparts/query.fasta - .cache/orphan-curated/UP000006548.fasta - genes/ARATH/AOP2/AOP2-bioinformatics/reference-counterparts/search.tsv - genes/ARATH/AOP2/AOP2-bioinformatics/reference-counterparts/tmp - --threads - '4' - -s - '7.5' - -e - 1e-5 - --max-seqs - '1000' - --format-output - query,target,pident,alnlen,qstart,qend,qlen,tstart,tend,tlen,evalue,bits - --remove-tmp-files - '1' - -v - '1' target_sequence_count: 39272 query_sha256: e3ea1beb7b2c939b554f512352a6a09ffc55e2f0a6dc7a27962ceada8103314e targets_sha256: 63edb51070a0f51cfce737f0ea84b186f2b511a5b7820a694139a04b30607464 global_alignment: mode: global matrix: BLOSUM62 open_gap: -10 extend_gap: -0.5 terminal_gaps_penalized: true identity_denominator: All global alignment columns, including gaps coverage_denominator: Full query/target length; numerator is paired nongap residues limitation: MMseqs2 heuristic search; no guarantee of exhaustive retrieval or locus equivalence target_source: url: https://rest.uniprot.org/uniprotkb/stream?query=proteome%3AUP000006548&format=fasta retrieved_at: '2026-10-18T23:32:19.237076+00:00' uniprot_release: '2026_03' sequence_count: 39272 sha256: 63edb51070a0f51cfce737f0ea84b186f2b511a5b7820a694139a04b30607464 detailed_alignment_limit: 10 candidate_count: 106 retained_alignment_count: 10 candidates: - accession: Q9ZTA2 description: sp|Q9ZTA2|AOP2C_ARATH Probable inactive 2-oxoglutarate-dependent dioxygenase AOP2 OS=Arabidopsis thaliana OX=3702 GN=AOP2 PE=2 SV=1 evalue: 4.407e-248 bit_score: 761.0 global_score: 1983.5 query_length: 432 target_length: 399 alignment_columns: 432 identities: 390 mismatches: 9 gap_columns: 33 identity_percent: 90.2778 query_coverage_percent: 92.3611 target_coverage_percent: 100.0 - accession: Q9ZTA1 description: sp|Q9ZTA1|AOP3C_ARATH 2-oxoglutarate-dependent dioxygenase AOP3 OS=Arabidopsis thaliana OX=3702 GN=AOP3 PE=2 SV=1 evalue: 3.927e-168 bit_score: 530.0 global_score: 1379.5 query_length: 432 target_length: 411 alignment_columns: 441 identities: 273 mismatches: 129 gap_columns: 39 identity_percent: 61.9048 query_coverage_percent: 93.0556 target_coverage_percent: 97.8102