F4JLB7 is a 450-residue leucine-rich-repeat protein encoded at the Arabidopsis thaliana At4g28560 locus. Its N-terminal signal peptide, LRR-rich region, and hydrophobic C-terminal sequence are consistent with a membrane-associated receptor-like protein. The domain architecture supports a noncatalytic cell-surface signaling role, without a protein kinase domain. Its ligand specificity and downstream signaling partners remain unresolved.
Summary: The curated plasma-membrane IBA is consistent with the signal peptide, LRR domain architecture, and hydrophobic C terminus of the deposited F4JLB7 sequence.
Reason: Retain the PAINT localization inference. The target architecture supports membrane association, and there is no target-specific contrary evidence. The RIC7 guard-cell literature is not required to support this IBA.
Supporting Evidence:
file:ARATH/F4JLB7/F4JLB7-uniprot.txt
DR InterPro; IPR001611; Leu-rich_rpt. DR InterPro; IPR032675; LRR_dom_sf. ... FT SIGNAL 1..22 FT /evidence="ECO:0000256|SAM:SignalP" ... GRALYSSARK VLPLIYFPAT LLALYISITQ
Summary: The signaling-receptor IBA agrees with the target LRR receptor-like architecture; F4JLB7 is not established as an intracellular CRIB-domain effector.
Reason: Retain the curated phylogenetic inference. Absence of an intrinsic kinase domain does not contradict a noncatalytic signaling receptor, and the deposited sequence supplies no evidence of a switch to CRIB-mediated ROP binding. The precise ligand and pathway remain unresolved.
Supporting Evidence:
file:ARATH/F4JLB7/F4JLB7-uniprot.txt
DR InterPro; IPR001611; Leu-rich_rpt. DR InterPro; IPR032675; LRR_dom_sf. ... FT SIGNAL 1..22 FT /evidence="ECO:0000256|SAM:SignalP" ... GRALYSSARK VLPLIYFPAT LLALYISITQ
Summary: Membrane association is consistent with the target signal peptide, hydrophobic C terminus, and curated plasma-membrane IBA.
Reason: The broad membrane term is compatible with the sequence but less informative than the existing plasma-membrane annotation. Specific GPI anchoring and the correspondence of constructs in the cited literature to the deposited sequence are not established here.
Supporting Evidence:
file:ARATH/F4JLB7/F4JLB7-uniprot.txt
DR InterPro; IPR001611; Leu-rich_rpt. DR InterPro; IPR032675; LRR_dom_sf. ... FT SIGNAL 1..22 FT /evidence="ECO:0000256|SAM:SignalP" ... GRALYSSARK VLPLIYFPAT LLALYISITQ
TAS PMID:12068095 Prediction of glycosylphosphatidylinositol-anchored proteins...
KEEP AS NON CORE
Summary: Membrane association is consistent with the target signal peptide, hydrophobic C terminus, and curated plasma-membrane IBA.
Reason: The broad membrane term is compatible with the sequence but less informative than the existing plasma-membrane annotation. Specific GPI anchoring and the correspondence of constructs in the cited literature to the deposited sequence are not established here.
Supporting Evidence:
file:ARATH/F4JLB7/F4JLB7-uniprot.txt
DR InterPro; IPR001611; Leu-rich_rpt. DR InterPro; IPR032675; LRR_dom_sf. ... FT SIGNAL 1..22 FT /evidence="ECO:0000256|SAM:SignalP" ... GRALYSSARK VLPLIYFPAT LLALYISITQ
TAS PMID:12805588 Identification of glycosylphosphatidylinositol-anchored prot...
KEEP AS NON CORE
Summary: Membrane association is consistent with the target signal peptide, hydrophobic C terminus, and curated plasma-membrane IBA.
Reason: The broad membrane term is compatible with the sequence but less informative than the existing plasma-membrane annotation. Specific GPI anchoring and the correspondence of constructs in the cited literature to the deposited sequence are not established here.
Supporting Evidence:
file:ARATH/F4JLB7/F4JLB7-uniprot.txt
DR InterPro; IPR001611; Leu-rich_rpt. DR InterPro; IPR032675; LRR_dom_sf. ... FT SIGNAL 1..22 FT /evidence="ECO:0000256|SAM:SignalP" ... GRALYSSARK VLPLIYFPAT LLALYISITQ
Summary: The chloroplast assignment is a computational AtSubP inference, whereas the SignalP feature and LRR receptor-like architecture suggest secretory-pathway targeting.
Reason: The conflicting targeting predictions do not establish chloroplast localization or conclusively exclude it. Direct localization of the deposited F4JLB7 product is needed; RIC7 localization findings cannot be transferred solely by the shared database name.
Supporting Evidence:
file:ARATH/F4JLB7/F4JLB7-uniprot.txt
DR InterPro; IPR001611; Leu-rich_rpt. DR InterPro; IPR032675; LRR_dom_sf. ... FT SIGNAL 1..22 FT /evidence="ECO:0000256|SAM:SignalP" ... GRALYSSARK VLPLIYFPAT LLALYISITQ
IPI PMID:11752391 A genome-wide analysis of Arabidopsis Rop-interactive CRIB m...
UNDECIDED
Summary: The published RIC7 cloning primers in PMID:11752391 match the adjacent AT4G28556 CRIB gene, supporting probable wrong-gene attribution of ROP binding to F4JLB7.
Reason: The sequence analysis maps both Wu RIC7 primers to AT4G28556 and finds no qualifying matches in AT4G28560. The locus-identity report therefore recommends correction of the experimental gene-product association. Retain UNDECIDED pending reconciliation of the source AGI-to-UniProt mapping and physical clone provenance; the primer evidence strongly favors the CRIB locus. This experiment should not support the LRR protein's core function through its shared RIC7 name.
IMP PMID:11752391 A genome-wide analysis of Arabidopsis Rop-interactive CRIB m...
UNDECIDED
Summary: The published RIC7 cloning primers in PMID:11752391 match the adjacent AT4G28556 CRIB gene, supporting probable wrong-gene attribution of the pollen-tube overexpression phenotype to F4JLB7.
Reason: The sequence analysis maps both Wu RIC7 primers to AT4G28556 and finds no qualifying matches in AT4G28560. The locus-identity report therefore recommends correction of the experimental gene-product association. Retain UNDECIDED pending reconciliation of the source AGI-to-UniProt mapping and physical clone provenance; the primer evidence strongly favors the CRIB locus. This experiment should not support the LRR protein's core function through its shared RIC7 name.
IDA PMID:11752391 A genome-wide analysis of Arabidopsis Rop-interactive CRIB m...
UNDECIDED
Summary: The published RIC7 cloning primers in PMID:11752391 match the adjacent AT4G28556 CRIB gene, supporting probable wrong-gene attribution of apical plasma-membrane localization to F4JLB7.
Reason: The sequence analysis maps both Wu RIC7 primers to AT4G28556 and finds no qualifying matches in AT4G28560. The locus-identity report therefore recommends correction of the experimental gene-product association. Retain UNDECIDED pending reconciliation of the source AGI-to-UniProt mapping and physical clone provenance; the primer evidence strongly favors the CRIB locus. This experiment should not support the LRR protein's core function through its shared RIC7 name.
IC PMID:11751054 The leucine-rich repeat as a protein recognition motif.
ACCEPT
Summary: A role in signal transduction is compatible with the curated signaling-receptor inference and LRR receptor-like architecture.
Reason: The broad signaling process is reasonable for this receptor-like protein. The general LRR reference supplies architectural context, not evidence for a specific ROP2-RIC7-Exo70B1 pathway in F4JLB7.
Supporting Evidence:
file:ARATH/F4JLB7/F4JLB7-uniprot.txt
DR InterPro; IPR001611; Leu-rich_rpt. DR InterPro; IPR032675; LRR_dom_sf. ... FT SIGNAL 1..22 FT /evidence="ECO:0000256|SAM:SignalP" ... GRALYSSARK VLPLIYFPAT LLALYISITQ
Core Functions
F4JLB7 has a noncatalytic LRR receptor-like architecture consistent with the curated signaling-receptor inference. Its precise ligand and downstream pathway are unresolved.
DR InterPro; IPR001611; Leu-rich_rpt. DR InterPro; IPR032675; LRR_dom_sf. ... FT SIGNAL 1..22 FT /evidence="ECO:0000256|SAM:SignalP" ... GRALYSSARK VLPLIYFPAT LLALYISITQ
Q: Published RIC7 primers match AT4G28556/Q1G3K8 rather than AT4G28560/F4JLB7. At which stage of source curation or AGI-to-UniProt export were the three PMID:11752391 experimental annotations associated with F4JLB7, and what source-level correction preserves the original assay provenance?
Suggested experts: TAIR curators
External Prediction Reviews
These computational predictions are reviewed separately from the GOA annotation set used for this review. The assessments below are from this project and do not constitute official GO annotations or endorsement by GO/UniProt. They are not included in the existing annotation review above.
F4JLB7 is a 450-residue LRR-containing receptor-like protein without a protein kinase domain. Kinase activity is incompatible with this architecture, while participation in phosphorylation remains unresolved.
Prediction method: ProtNLM2 Β· Version: UniProt 2024_06 pilot
Review rationale: The OpenScientist investigation integrates LRR domain architecture, catalytic-motif analysis, and predicted structure to argue against intrinsic protein kinase activity. Those findings do not exclude participation in phosphorylation through an associated kinase or signaling complex. The cached IBA signaling receptor annotation is compatible with such a role, but does not establish it. No target-specific pathway evidence establishes or excludes participation in phosphorylation, so this biological-process prediction remains uncertain.
Prediction method: ProtNLM2 Β· Version: UniProt 2024_06 pilot
DOMAIN ARCHITECTURE MISMATCH
Review rationale: The OpenScientist investigation strongly supports rejection of kinase activity: it integrates LRR-only domain assignments, a sequence scan finding no ordered kinase catalytic motifs, and an AlphaFold model assessed as an LRR fold without a kinase lobe. These complementary findings argue against a protein kinase catalytic domain in the 450-residue target, rather than merely noting the absence of a kinase annotation in UniProt. The report also explains why the ERECTA FunFam match supports a shared LRR region without transferring the kinase's catalytic activity. The rejection rests on this combined architecture and analysis evidence, not on absence of a single short motif; it is a computational assessment without a direct biochemical assay. The kinase prediction is therefore NPI; participation in a phosphorylation pathway is a separate question.
Supporting Evidence:
file:ARATH/F4JLB7/F4JLB7-hypotheses/prediction-kinase-activity/openscientist.md: "Second, a **direct motif scan** of the sequence recovered 9 canonical LRR cores but found no ordered kinase catalytic triad; the isolated "DFG" (position 149, inside PEDFGSV) and a "GNGFHG" hit (position 186) are coincidental tripeptides embedded within the LRR solenoid, not part of a folded catalytic cleft."
file:ARATH/F4JLB7/F4JLB7-uniprot.txt: "ID F4JLB7_ARATH Unreviewed; 450 AA. ... DR GO; GO:0005886; C:plasma membrane; IBA:GO_Central. ... DR GO; GO:0038023; F:signaling receptor activity; IBA:GO_Central. ... DR InterPro; IPR001611; Leu-rich_rpt. ... DR InterPro; IPR032675; LRR_dom_sf. ... DR Pfam; PF00560; LRR_1; 3. ... DR Pfam; PF13855; LRR_8; 1. ... FT SIGNAL 1..22"