FER

UniProt ID: Q9SCZ4
Organism: Arabidopsis thaliana
Review Status: DRAFT
πŸ“ Provide Detailed Feedback

Gene Description

FERONIA (FER) is a plasma-membrane receptor-like protein kinase of the CrRLK1L (Catharanthus roseus RLK1-like) subfamily and a master cell-surface sensor in Arabidopsis. It has an extracellular tandem malectin-like domain that, together with GPI-anchored co-receptors of the LORELEI/LLG family, perceives secreted RALF (rapid alkalinization factor) peptide ligands, and an intracellular serine/threonine protein kinase domain (EC 2.7.11.1) that autophosphorylates and phosphorylates downstream substrates. RALF binding activates FER, which acts as an upstream regulator of RAC/ROP GTPase signaling through ROPGEFs, driving NADPH-oxidase-dependent reactive oxygen species production; FER thereby couples cell-wall integrity sensing to control of polarized cell growth (root hairs, trichomes, general cell elongation) and to inhibition of cell expansion via phosphorylation-dependent down-regulation of the plasma-membrane H+-ATPase and apoplastic alkalinization. In the female gametophyte FER accumulates asymmetrically at the synergid filiform apparatus and is essential for pollen tube reception, sperm release, and the polytubey block during fertilization, acting in heterocomplexes with the related CrRLK1Ls HERK1 and ANJEA. FER is broadly expressed (absent only in mature pollen) and serves as a signaling hub that integrates hormone responses (abscisic acid, brassinosteroid, ethylene, auxin), mechanosensing, flowering-time control, plant immunity, and powdery-mildew susceptibility. Although FER is a genuine active kinase, several of its functions (notably pollen tube reception) can be supported by kinase-inactive FER, indicating scaffolding/co-receptor roles in addition to catalysis.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0004672 protein kinase activity
IEA
GO_REF:0000002
ACCEPT
Summary: FER is a bona fide protein kinase; this is a correct molecular function, though more general than the Ser/Thr-specific terms.
Reason: Correct molecular function, also supported experimentally (IDA, PMID:17673660). The more precise core MF is the receptor serine/threonine kinase activity, but the general protein kinase activity term is accurate.
Supporting Evidence:
file:ARATH/FER/FER-uniprot.txt
RecName: Full=Receptor-like protein kinase FERONIA
GO:0004674 protein serine/threonine kinase activity
IEA
GO_REF:0000003
ACCEPT
Summary: FER is a serine/threonine protein kinase (EC 2.7.11.1); this is a correct and central molecular function.
Reason: UniProt assigns EC 2.7.11.1 and the Ser/Thr protein kinase family; the kinase domain (536-810) with active-site Asp-661 and ATP-binding Lys-565 is experimentally validated (K565R abolishes activity). FER also autophosphorylates on Thr residues in vitro.
Supporting Evidence:
file:ARATH/FER/FER-uniprot.txt
Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
file:ARATH/FER/FER-uniprot.txt
MUTAGEN 565
GO:0004714 transmembrane receptor protein tyrosine kinase activity
IEA
GO_REF:0000002
MODIFY
Summary: The receptor-kinase framing is correct, but the tyrosine specificity is wrong - FER is a serine/threonine receptor kinase, not a tyrosine kinase.
Reason: This IEA derives from InterPro IPR045272 (ANXUR1/2-like) mapped through a generic Tyr/Ser-Thr catalytic-domain signature (Pfam PK_Tyr_Ser-Thr). UniProt and Rhea assign FER only Ser/Thr activity (EC 2.7.11.1), and plant CrRLK1Ls are Ser/Thr (RD) kinases. The correct receptor molecular function is transmembrane receptor protein serine/threonine kinase activity (GO:0004675), which also captures the single-pass transmembrane receptor architecture.
Supporting Evidence:
file:ARATH/FER/FER-uniprot.txt
Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
GO:0005524 ATP binding
IEA
GO_REF:0000002
KEEP AS NON CORE
Summary: FER binds ATP as the phosphate donor for its kinase activity.
Reason: Correct cofactor-binding function supporting the kinase activity; FER has a defined ATP-binding site (residues 542-550 and Lys-565). Standard supporting MF for an active kinase rather than a core distinguishing function.
Supporting Evidence:
file:ARATH/FER/FER-uniprot.txt
/ligand="ATP"
GO:0005886 plasma membrane
IEA
GO_REF:0000120
ACCEPT
Summary: Plasma membrane is the correct and core subcellular location of this single-pass receptor kinase.
Reason: FER is a single-pass type I plasma-membrane protein, confirmed by multiple IDA/HDA studies; the electronic localization agrees with experiment.
Supporting Evidence:
file:ARATH/FER/FER-uniprot.txt
Single-pass type I membrane protein
GO:0106310 protein serine kinase activity
IEA
GO_REF:0000116
KEEP AS NON CORE
Summary: Consistent with FER being a Ser/Thr kinase; RALF-activated FER is phosphorylated on serines and autophosphorylates.
Reason: Rhea-based electronic annotation for the serine-directed half of the Ser/Thr kinase reaction. Correct and supported (FER phosphosites Ser-858/871/874), but redundant with the broader serine/threonine kinase term that is the core MF.
Supporting Evidence:
file:ARATH/FER/FER-uniprot.txt
Phosphorylated at Ser-858, Ser-871 and Ser-874 upon activation by RALF1.
GO:0005515 protein binding
IPI
PMID:20876100
FERONIA receptor-like kinase regulates RHO GTPase signaling ...
KEEP AS NON CORE
Summary: Captures the FER-ROPGEF1 (and ROP2) interaction underlying RAC/ROP-ROS signaling, but the bare "protein binding" term is uninformative.
Reason: The interactions with ROPGEF1/ROP GTPase are biologically central, but GO:0005515 does not convey the upstream regulator-of-RAC/ROP function. The informative function is captured in core_functions (cell-surface regulator of RAC/ROP-NADPH oxidase ROS signaling). Per curation guidelines, bare protein binding is not retained as core.
Supporting Evidence:
PMID:20876100
FER was pulled down by ROP2 GTPase in a guanine nucleotide-regulated manner
GO:0005515 protein binding
IPI
PMID:24458638
A peptide hormone and its receptor protein kinase regulate p...
KEEP AS NON CORE
Summary: Records the FER-RALF1 ligand-receptor interaction, but the bare term hides that RALF1 is FER's activating peptide ligand.
Reason: This IPI is to RALF1 (UniProtKB:Q9SRY3), the secreted peptide ligand that binds and activates FER. The functionally meaningful annotation is RALF peptide ligand binding / receptor activation (see core_functions), not generic protein binding.
Supporting Evidence:
PMID:24458638
specific binding of RALF to FERONIA
GO:0005515 protein binding
IPI
PMID:31867824
CrRLK1L receptor-like kinases HERK1 and ANJEA are female det...
KEEP AS NON CORE
Summary: Captures FER interaction with the CrRLK1L co-receptors HERK1 and ANJEA (and LRE) that form pollen-tube-reception heterocomplexes.
Reason: Real and relevant (FER-HERK1/ANJ-LRE complexes at the filiform apparatus), but the bare term is uninformative; the function is reflected in the pollen tube reception annotations and core_functions.
Supporting Evidence:
PMID:31867824
Both ANJ and HERK1 associate with FER and its proposed co-receptor LORELEI (LRE) in planta
GO:0005515 protein binding
IPI
PMID:40323783
RALF33-FERONIA signaling orchestrates postwounding root-tip ...
KEEP AS NON CORE
Summary: Captures the FER-TPR4 interaction in RALF33-FER signaling controlling wound-induced root-tip regeneration.
Reason: Specific downstream interaction (FER phosphorylates TPR4 in a RALF33 module), relevant to a non-core regeneration process; bare protein binding is uninformative.
Supporting Evidence:
PMID:40323783
hinders FER-mediated phosphorylation of the transcriptional co-repressor TOPLESS-RELATED4 (TPR4)
GO:0005515 protein binding
IPI
PMID:40348341
FERONIA interacts with NPL4 to regulate immunity gene mRNA n...
KEEP AS NON CORE
Summary: Captures FER-NPL4 interaction linking RALF-FER signaling to immunity-gene mRNA nucleocytoplasmic transport.
Reason: Specific downstream immunity-related interaction; relevant but non-core, and bare protein binding is uninformative.
Supporting Evidence:
PMID:40348341
FER displays functional interactions with NPL4
GO:0005515 protein binding
IPI
PMID:35050671
RALF peptide signaling controls the polytubey block in Arabi...
KEEP AS NON CORE
Summary: Captures FER interaction with pollen-tube RALF6/7/16/36/37 peptides that establish the polytubey block.
Reason: These are RALF peptide ligand interactions (a core ligand-binding theme) in the specific context of preventing polytubey/polyspermy; the bare term is uninformative and the function is reflected in core_functions and the reproduction annotations.
Supporting Evidence:
PMID:35050671
FERONIA, ANJEA, and HERCULES RECEPTOR KINASE 1 receptor-like kinases located at the septum interact with pollen tube-specific RALF6, 7, 16, 36, and 37 peptide ligands
GO:0005515 protein binding
IPI
PMID:36527240
CAR modulates plasma membrane nano-organization and immune s...
KEEP AS NON CORE
Summary: Captures FER interaction with C2-domain ABA-related (CAR) proteins that organize PM nanodomains downstream of RALF1-FER.
Reason: Specific downstream interaction relevant to PM nano-organization and immune signaling; relevant but non-core, and bare protein binding is uninformative.
Supporting Evidence:
PMID:36527240
FER ... physically interacts with C2 domain ABA-related (CAR) proteins to control the nano-organization of the PM
GO:0005515 protein binding
IPI
PMID:36053485
Identification of Feronia-interacting proteins in Arabidopsi...
KEEP AS NON CORE
Summary: Captures Y2H/BiFC FER interactions with ARM-repeat, PUB9, IQD7 and HGL1 proteins as candidate intracellular signaling partners.
Reason: Interaction-screen partners of uncertain functional weight; relevant but non-core, and bare protein binding is uninformative.
Supporting Evidence:
PMID:36053485
BiFC confirmed the in vivo interactions between these four proteins and AtFER
GO:0005886 plasma membrane
HDA
PMID:14506206
Large-scale analysis of in vivo phosphorylated membrane prot...
ACCEPT
Summary: High-throughput PM phosphoproteomics localizing FER to the plasma membrane; consistent with its core PM location.
Reason: PM proteomics detection agrees with the established single-pass PM localization of FER. This study also identified the FER phosphosite Ser-866.
Supporting Evidence:
file:ARATH/FER/FER-uniprot.txt
Single-pass type I membrane protein
GO:0005886 plasma membrane
HDA
PMID:17644812
A high content in lipid-modified peripheral proteins and int...
ACCEPT
Summary: PM proteomics of receptor kinases localizing FER to the plasma membrane; consistent with its core location.
Reason: Plasma-membrane proteome study detecting FER among integral receptor kinases; corroborates the established PM localization.
Supporting Evidence:
file:ARATH/FER/FER-uniprot.txt
Cell membrane {ECO:0000269|PubMed:17673660,
GO:0005886 plasma membrane
HDA
PMID:22923678
Putative glycosyltransferases and other plant Golgi apparatu...
ACCEPT
Summary: LOPIT spatial-proteomics detection assigning FER to the plasma membrane; consistent with its core location.
Reason: Spatial proteomics (LOPIT) detection corroborates PM localization of FER.
Supporting Evidence:
file:ARATH/FER/FER-uniprot.txt
Single-pass type I membrane protein
GO:0009506 plasmodesma
HDA
PMID:21533090
Arabidopsis plasmodesmal proteome.
KEEP AS NON CORE
Summary: Detected in a plasmodesmal proteome; plausible since the PM is continuous through plasmodesmata, but not a core functional location.
Reason: High-throughput plasmodesmal proteomics detection. FER is a PM protein and plasmodesmal pores are PM-lined, so detection is plausible, but there is no functional evidence for a plasmodesma-specific role. Retain as non-core.
Supporting Evidence:
PMID:21533090
Arabidopsis plasmodesmal proteome
GO:0032922 circadian regulation of gene expression
IEP
PMID:31948398
Receptor kinase FERONIA regulates flowering time in Arabidop...
KEEP AS NON CORE
Summary: FER expression oscillates diurnally (driven by CCA1) and fer mutants alter clock-gene expression patterns; a non-core regulatory linkage.
Reason: Supported by expression-pattern (IEP) evidence that FER is clock-regulated and feeds back on clock-gene amplitude/period, linked to flowering-time control. This is a peripheral regulatory role, not a core FER function.
Supporting Evidence:
PMID:31948398
FER mRNA levels exhibit an oscillating pattern with a diurnal rhythm and that the clock oscillator CIRCADIAN CLOCK-ASSOCIATED1 (CCA1) up-regulates the expression of FER
GO:0005576 extracellular region
ISM
GO_REF:0000122
MARK AS OVER ANNOTATED
Summary: Misleading whole-protein localization prediction; FER is an integral single-pass plasma-membrane protein, not a secreted/extracellular protein.
Reason: This is an electronic subcellular-localization prediction (AtSubP, GO_REF:0000122). FER has a large extracellular malectin-like ectodomain but is anchored in the plasma membrane via a transmembrane helix; "extracellular region" as the cellular location overstates the prediction. Plasma membrane is the correct, experimentally supported location.
Supporting Evidence:
file:ARATH/FER/FER-uniprot.txt
Single-pass type I membrane protein
GO:0010118 stomatal movement
IGI
PMID:29301953
The G Protein Ξ²-Subunit, AGB1, Interacts with FERONIA in RAL...
KEEP AS NON CORE
Summary: FER acts with the G-protein beta subunit AGB1 in RALF1-regulated stomatal aperture control; a non-core physiological role.
Reason: Genetic-interaction (IGI with AGB1) evidence that RALF1-FER, via heterotrimeric G proteins, regulates stomatal opening/closure. A legitimate but peripheral guard-cell function relative to FER's core cell-surface signaling role.
Supporting Evidence:
PMID:29301953
RALF1 regulates stomatal apertures and does so in a G protein-dependent manner
GO:0005886 plasma membrane
IDA
PMID:29042459
Environmental and Genetic Factors Regulating Localization of...
ACCEPT
Summary: Direct-assay plasma-membrane localization of FER; corroborates the core PM location.
Reason: IDA plasma-membrane localization, consistent with all other lines of evidence that FER is a single-pass PM receptor kinase.
Supporting Evidence:
file:ARATH/FER/FER-uniprot.txt
Single-pass type I membrane protein
GO:0005515 protein binding
IPI
PMID:26052747
Glycosylphosphatidylinositol-anchored proteins as chaperones...
KEEP AS NON CORE
Summary: Captures the FER interaction with GPI-anchored co-receptors LLG1 and LRE (LORELEI), essential for FER trafficking and signaling.
Reason: Functionally important interaction (LLG1/LRE bind the FER extracellular juxtamembrane region, control FER ER-to-PM transport, and are part of the RAC/ROP signaling complex), but the bare protein binding term is uninformative. The co-receptor relationship is reflected in core_functions.
Supporting Evidence:
PMID:26052747
LLG1) bind to the extracellular juxtamembrane region of FER
GO:0009788 negative regulation of abscisic acid-activated signaling pathway
IMP
PMID:22908257
FERONIA receptor kinase pathway suppresses abscisic acid sig...
KEEP AS NON CORE
Summary: FER suppresses ABA signaling via the ROPGEF-ROP11/ARAC10-ABI2 module; fer mutants are ABA-hypersensitive.
Reason: Well-supported by mutant analysis (IMP); the FER-GEF1/4/10-ROP11-ABI2 pathway down-regulates ABA responses. A genuine signaling output but one of several hormone-crosstalk roles, hence non-core relative to the cell-wall-integrity and RAC/ROP-ROS core.
Supporting Evidence:
PMID:22908257
suppress the abscisic acid (ABA) response through activation of ABI2
GO:0030308 negative regulation of cell growth
IMP
PMID:24458638
A peptide hormone and its receptor protein kinase regulate p...
ACCEPT
Summary: RALF1-activated FER inhibits cell expansion by phosphorylating and down-regulating the PM H+-ATPase (AHA2), raising apoplastic pH; a core output.
Reason: Strong mutant and biochemical evidence (IMP) that FER mediates RALF-induced suppression of root cell elongation via AHA2 inhibition. This negative regulation of cell expansion is a defining cell-wall-integrity output of FER signaling.
Supporting Evidence:
PMID:24458638
a secreted peptide, RALF (rapid alkalinization factor), suppresses cell elongation of the primary root by activating the cell surface receptor FERONIA
file:ARATH/FER/FER-deep-research-falcon.md
FER is required for cellular responses to RALF1, a peptide that triggers extracellular alkalinization and growth inhibition.
GO:0048364 root development
IMP
PMID:24458638
A peptide hormone and its receptor protein kinase regulate p...
KEEP AS NON CORE
Summary: fer mutants have altered root growth (longer roots, RALF1 insensitivity); a broad developmental term reflecting FER's role in root cell elongation.
Reason: Supported by mutant phenotypes, but "root development" is a broad process term; the mechanistic, core FER function is the RALF-FER control of root cell expansion (captured by negative regulation of cell growth and core_functions).
Supporting Evidence:
PMID:24458638
The roots of both fer4 and ralf loss-of-function mutants were longer than wild-type roots
GO:0009723 response to ethylene
IMP
PMID:20400488
FERONIA is a key modulator of brassinosteroid and ethylene r...
KEEP AS NON CORE
Summary: fer mutants show altered ethylene responsiveness in hypocotyl elongation; a hormone-crosstalk role, non-core.
Reason: Supported by mutant analysis showing FER modulates ethylene responsiveness (fer-2 has heightened ethylene response). Legitimate but peripheral to FER's core cell-surface signaling function.
Supporting Evidence:
PMID:20400488
extreme responsiveness to even low levels of ethylene
GO:0009741 response to brassinosteroid
IMP
PMID:20400488
FERONIA is a key modulator of brassinosteroid and ethylene r...
KEEP AS NON CORE
Summary: fer mutants show altered brassinosteroid responsiveness in hypocotyls; a hormone-crosstalk role, non-core.
Reason: Supported by mutant analysis (etiolated fer-2 is partially BR-insensitive); FER is also transcriptionally induced by BR and acts with HERK1/THE1 in a largely BR-independent cell-elongation pathway. A peripheral hormone-response role.
Supporting Evidence:
PMID:20400488
etiolated fer-2 seedlings being partially brassinosteroid insensitive with regard to promotion of hypocotyl elongation
GO:0010483 pollen tube reception
IMP
PMID:21071669
Conserved molecular components for pollen tube reception and...
ACCEPT
Summary: FER controls pollen tube reception in synergids; loss causes pollen tube overgrowth and failed fertilization. A core reproductive function.
Reason: Repeatedly demonstrated by mutant analysis (IMP) that FER is required in the female gametophyte for pollen tube arrest and sperm release, including control of NORTIA/MLO relocalization. This is a defining FER function.
Supporting Evidence:
PMID:21071669
both control PT reception in synergids
GO:0043680 filiform apparatus
IDA
PMID:21071669
Conserved molecular components for pollen tube reception and...
ACCEPT
Summary: FER accumulates at the synergid filiform apparatus, the site of pollen tube reception; a specific functional localization.
Reason: Direct imaging (IDA) shows asymmetric FER accumulation at the filiform apparatus, directly tied to its pollen-tube-reception function. Specific and well-supported subcellular location.
Supporting Evidence:
file:ARATH/FER/FER-uniprot.txt
Accumulates asymmetrically in the female gametophyte synergid membrane at the filiform apparatus.
GO:0050832 defense response to fungus
IMP
PMID:21071669
Conserved molecular components for pollen tube reception and...
KEEP AS NON CORE
Summary: fer mutants are resistant to powdery mildew, i.e. FER normally promotes susceptibility to this fungus; captured by a broad defense term with an acts_upstream qualifier.
Reason: Supported by mutant analysis (IMP) that loss of FER confers powdery-mildew resistance, revealing FER as a susceptibility factor. The broad term plus the acts_upstream_of_or_within qualifier captures the regulatory linkage. A non-core, immunity-related role; note the directionality (FER promotes susceptibility) is opposite to a classic defensive function.
Supporting Evidence:
PMID:21071669
Homozygous fer mutants also display PM resistance, revealing a new function for FER
GO:0009791 post-embryonic development
IMP
PMID:19383785
Three related receptor-like kinases are required for optimal...
KEEP AS NON CORE
Summary: fer RNAi mutants are dwarfed due to impaired cell elongation during vegetative growth; a broad developmental term.
Reason: Supported by mutant analysis showing FER is required for optimal cell elongation (with HERK1/THE1). "Post-embryonic development" is a very general process term; the mechanistic core is cell-wall-integrity/cell-expansion control.
Supporting Evidence:
PMID:19383785
fer RNAi mutants displayed striking dwarf phenotypes
GO:0010483 pollen tube reception
IMP
PMID:17673660
The FERONIA receptor-like kinase mediates male-female intera...
ACCEPT
Summary: The original FER characterization; fer synergids fail to arrest the pollen tube, which overgrows. Core reproductive function.
Reason: Foundational mutant evidence (IMP) that FER mediates female control of pollen tube reception. Independent support for the core reproductive role.
Supporting Evidence:
PMID:17673660
the pollen tube fails to arrest and thus continues to grow inside the female gametophyte
file:ARATH/FER/FER-deep-research-falcon.md
In a large fraction of fer mutant female gametophytes, the penetrated pollen tube
GO:0004672 protein kinase activity
IDA
PMID:17673660
The FERONIA receptor-like kinase mediates male-female intera...
ACCEPT
Summary: Direct demonstration of FER kinase activity; the kinase-dead K565R mutant loses activity. Core molecular function (though general term).
Reason: Experimental (IDA) confirmation that FER is an active protein kinase. FER is a genuine active kinase, though some signaling outputs (e.g. pollen tube reception) are kinase-independent/scaffolding. The Ser/Thr-specific term is the most precise core MF.
Supporting Evidence:
file:ARATH/FER/FER-uniprot.txt
MUTAGEN 565
GO:0005886 plasma membrane
IDA
PMID:17673660
The FERONIA receptor-like kinase mediates male-female intera...
ACCEPT
Summary: Direct demonstration that FER is a plasma-membrane-localized receptor kinase. Core location.
Reason: IDA localization in the foundational FER paper; consistent with all other evidence for PM localization.
Supporting Evidence:
PMID:17673660
plasma membrane-localized receptor-like kinase
GO:0043680 filiform apparatus
IDA
PMID:17673660
The FERONIA receptor-like kinase mediates male-female intera...
ACCEPT
Summary: Original demonstration that FER accumulates asymmetrically at the synergid filiform apparatus, the site of pollen tube reception.
Reason: Foundational IDA localization tied directly to FER's pollen-tube-reception function; specific and well-supported.
Supporting Evidence:
file:ARATH/FER/FER-uniprot.txt
Accumulates asymmetrically in the female gametophyte synergid membrane at the filiform apparatus.
file:ARATH/FER/FER-deep-research-falcon.md
In ovules, FER-GFP localizes prominently at the filiform apparatus
GO:0046777 protein autophosphorylation
IDA
PMID:17673660
The FERONIA receptor-like kinase mediates male-female intera...
ACCEPT
Summary: FER autophosphorylates; a direct biochemical activity central to its function as an active receptor kinase.
Reason: Direct experimental evidence (IDA) of FER autophosphorylation, also seen in cell-free assays and on Thr residues (T559/T664). Autophosphorylation is a hallmark of FER's active receptor-kinase function and contributes to RALF-induced activation.
Supporting Evidence:
file:ARATH/FER/FER-uniprot.txt
Autophosphorylated.

Core Functions

Acts as a plasma-membrane receptor serine/threonine protein kinase that perceives secreted RALF peptide ligands through its extracellular malectin-like domain together with GPI-anchored LLG1/LORELEI co-receptors, transducing the signal via autophosphorylation and substrate phosphorylation.

Supporting Evidence:
  • PMID:24458638
    specific binding of RALF to FERONIA
  • PMID:26052747
    LLG1) bind to the extracellular juxtamembrane region of FER
  • file:ARATH/FER/FER-deep-research-falcon.md
    RALF1 binds directly to the FER extracellular domain and RALF1 treatment enhances FER phosphorylation at C-terminal Ser residues

Functions as an upstream cell-surface regulator of RAC/ROP GTPase signaling, acting through ROPGEFs to drive NADPH-oxidase-dependent reactive oxygen species production that supports polarized cell growth and cell-wall integrity sensing (e.g. root hairs).

Supporting Evidence:
  • PMID:20876100
    FER as an upstream regulator for the RAC/ROP-signaled pathway that controls ROS-mediated root hair development
  • PMID:26052747
    GTP-bound activated RAC/ROPs recruit NADPH oxidases to mediate downstream ROS-dependent processes
  • file:ARATH/FER/FER-deep-research-falcon.md
    FER functions upstream of RAC/ROP activation and is required for **NADPH oxidase–dependent ROS production**, linking it to ROS-mediated growth and integrity

Mediates RALF-induced negative regulation of cell expansion by phosphorylation-dependent down-regulation of the plasma-membrane H+-ATPase, causing apoplastic alkalinization and suppression of cell elongation.

Supporting Evidence:
  • PMID:24458638
    a secreted peptide, RALF (rapid alkalinization factor), suppresses cell elongation of the primary root by activating the cell surface receptor FERONIA

In the female gametophyte, accumulates at the synergid filiform apparatus and is required for pollen tube reception and sperm release, acting in CrRLK1L heterocomplexes with HERK1 and ANJEA to mediate female-male gametophyte signaling and the polytubey block.

Supporting Evidence:
  • PMID:17673660
    the pollen tube fails to arrest and thus continues to grow inside the female gametophyte
  • PMID:31867824
    HERK1 and ANJ act with FER to mediate female-male gametophyte interactions during plant fertilisation

References

Loading supporting content…

Download this section (compressed HTML)

Suggested Questions for Experts

Q: Which RALF peptide(s) and cell-wall ligands activate FER in each biological context (root cell expansion, root hair growth, pollen tube reception, immunity), and how is signaling specificity achieved through different LLG/LRE co-receptors?

Suggested experts: Plant peptide-signaling researchers, CrRLK1L receptor biologists

Q: Which FER functions require catalytic kinase activity versus scaffolding, and what are the bona fide in vivo phosphorylation substrates of FER beyond AHA2?

Suggested experts: Plant receptor-kinase biochemists, Phosphoproteomics specialists

Q: How does FER mechanistically convert cell-wall perturbation into RAC/ROP-ROS output, and what role does the malectin-like domain's pectin/polygalacturonic-acid binding play?

Suggested experts: Cell-wall integrity signaling researchers

Suggested Experiments

Experiment: Complement fer-4 with kinase-dead (K565R) versus wild-type FER and quantitatively assay pollen tube reception/sperm release, micropylar ROS, and RALF1-induced root growth inhibition and AHA2 phosphorylation in parallel.

Hypothesis: FER's pollen-tube-reception function is kinase-independent (scaffolding) whereas its RALF-induced root growth inhibition requires catalytic activity.

Experiment: Use purified FER ectodomain binding assays against defined pectin fragments (polygalacturonic acid, de-/methyl-esterified) combined with in planta ROS imaging after enzymatic cell-wall modification in wild-type versus fer mutants.

Hypothesis: FER directly senses cell-wall pectin status via its malectin-like domain to trigger RAC/ROP-ROS signaling.

Experiment: Reconstitute FER with LLG1, LLG2/3, or LRE in protoplasts/heterologous systems and measure binding and signaling responses to a panel of RALF peptides.

Hypothesis: Distinct LLG/LRE co-receptors define FER ligand specificity and tissue- specific outputs.

Deep Research

Falcon

(FER-deep-research-falcon.md)

Loading supporting content…

Download this section (compressed HTML)

πŸ“š Additional Documentation

Notes

(FER-notes.md)

Loading supporting content…

Download this section (compressed HTML)

πŸ“„ View Raw YAML

Loading supporting content…

Download this section (compressed HTML)