ProtNLM2 External predictions
View prediction review YAML Β· Q2U1U6-protnlm-predictions-review.yaml Β· Review status: COMPLETE
Q2U1U6 (locus AO090138000091) is a 134-residue TrEMBL translation whose only signature is the chondroitin AC/alginate lyase alpha/alpha-toroid fold (IPR008929, SSF48230). It is a truncated gene model covering the C-terminal residues 280-408 of a ~408-aa fungal ortholog, so the full-length product carries a complete lyase-like toroid domain. The gene review assigns a fold-level, unverified polysaccharide lyase activity; no experimental data, family-level (Pfam, PANTHER, CAZy) assignment or literature exist for this protein or its fungal orthologs. Neither polysaccharide catabolism nor O-glycosyl hydrolase activity is established.
Source documents: genes/ASPOR/Q2U1U6/Q2U1U6-uniprot.txt Β· genes/ASPOR/Q2U1U6/Q2U1U6-goa.tsv Β· genes/ASPOR/Q2U1U6/Q2U1U6-ai-review.yaml Β· genes/ASPOR/Q2U1U6/Q2U1U6-bioinformatics/RESULTS.md Β· genes/ASPOR/Q2U1U6/Q2U1U6-hypotheses/prediction-glycoside-hydrolase/openscientist.md
Review score: 2 = concordant with evidence; 1 = uncertain; 0 = discordant with evidence. This is an assessment score, not a model probability.
- file:ASPOR/Q2U1U6/Q2U1U6-uniprot.txt: "ID Q2U1U6_ASPOR Unreviewed; 134 AA. ... DR InterPro; IPR008929; Chondroitin_lyas. ... DR SUPFAM; SSF48230; Chondroitin AC/alginate lyase; 1."
- file:ASPOR/Q2U1U6/Q2U1U6-bioinformatics/RESULTS.md: "**Q2U1U6 is the C-terminal end of a ~408-aa protein.**"
- file:ASPOR/Q2U1U6/Q2U1U6-bioinformatics/RESULTS.md: "Q2U1U6 covers only residues 280-371 of that domain (its SSF48230 match is residues 6-97), i.e. roughly the last third of the alpha/alpha toroid."
- file:ASPOR/Q2U1U6/Q2U1U6-bioinformatics/RESULTS.md: "The full-length protein has no PANTHER family or Pfam family assignment;"
- file:ASPOR/Q2U1U6/Q2U1U6-hypotheses/prediction-glycoside-hydrolase/openscientist.md: "No positive evidence for catalysis of any kind."
- file:ASPOR/Q2U1U6/Q2U1U6-hypotheses/prediction-glycoside-hydrolase/openscientist.md: "Q2U1U6 may be a non-catalytic small all-Ξ± protein (structural/binding module) or a degenerate/truncated remnant of a lyase-fold ancestor."
- file:ASPOR/Q2U1U6/Q2U1U6-uniprot.txt: "ID Q2U1U6_ASPOR Unreviewed; 134 AA. ... DR InterPro; IPR008929; Chondroitin_lyas. ... DR SUPFAM; SSF48230; Chondroitin AC/alginate lyase; 1."
- file:ASPOR/Q2U1U6/Q2U1U6-bioinformatics/RESULTS.md: "The full-length protein has no PANTHER family or Pfam family assignment;"
- file:ASPOR/Q2U1U6/Q2U1U6-hypotheses/prediction-glycoside-hydrolase/openscientist.md: "Predicting a **hydrolase** from a **lyase** fold is a category error."