ProtNLM2 External predictions
View prediction review YAML ยท A0A061AL94-protnlm-predictions-review.yaml ยท Review status: COMPLETE
A0A061AL94 is the 74-residue product of the C. elegans mcm-4 (lin-6) transcript model Y39G10AR.14b. It is identical to residues 750-823 of canonical MCM-4 (Q95XQ8), starts at an internal methionine in the last coding exon, and consists only of the C-terminal winged-helix region (Pfam WHD_MCM4), lacking the zinc finger and the whole AAA+ ATPase domain. The replication, chromatin and nuclear annotations of mcm-4 are carried by the canonical product, and whether this short product is translated in vivo is unknown. ProtNLM2 emitted two GO terms; neither can be confirmed for this fragment.
Source documents: genes/CAEEL/A0A061AL94/A0A061AL94-uniprot.txt ยท genes/CAEEL/A0A061AL94/A0A061AL94-goa.tsv ยท publications/PMID_21146520.md ยท genes/CAEEL/A0A061AL94/A0A061AL94-hypotheses/prediction-transcription-initiation/openscientist.md ยท genes/CAEEL/A0A061AL94/A0A061AL94-bioinformatics/RESULTS.md ยท publications/PMID_10454562.md ยท publications/PMID_12392551.md
Review score: 2 = concordant with evidence; 1 = uncertain; 0 = discordant with evidence. This is an assessment score, not a model probability.
- file:CAEEL/A0A061AL94/A0A061AL94-hypotheses/prediction-transcription-initiation/openscientist.md: "No experimental or reliable computational support; it conflicts with the well-established replicative-helicase identity."
- file:CAEEL/A0A061AL94/A0A061AL94-hypotheses/prediction-transcription-initiation/openscientist.md: "A targeted search for an MCM/RNA-Pol-II transcription-initiation moonlighting activity returned no supporting primary evidence."
- PMID:21146520: "associates with chromatin in late anaphase"
- file:CAEEL/A0A061AL94/A0A061AL94-bioinformatics/RESULTS.md: "The fragment is an exact substring of the canonical protein: canonical residues 750-823, 100% identity,"
- PMID:10454562: "These results suggest a new function for MCM proteins as components of the Pol II transcriptional apparatus."
- PMID:12392551: "We found that amino acids 168-230 of MCM2 are required for its binding to pol II holoenzyme in vivo."
- PMID:21146520: "associates with chromatin in late anaphase"
- file:CAEEL/A0A061AL94/A0A061AL94-bioinformatics/RESULTS.md: "The fragment is an exact substring of the canonical protein: canonical residues 750-823, 100% identity,"
- file:CAEEL/A0A061AL94/A0A061AL94-uniprot.txt: "DR Pfam; PF21128; WHD_MCM4; 1."