id: A0A0D2VGR4
gene_symbol: coWts
aliases:
- CAOG_00619
- CAOG_000619
- Warts
- LATS
product_type: PROTEIN
status: DRAFT
taxon:
  id: NCBITaxon:595528
  label: Capsaspora owczarzaki ATCC 30864
description: >-
  coWts (CAOG_00619) is the single Warts/LATS-family (NDR subfamily, AGC group)
  serine/threonine protein kinase of the filasterean amoeba Capsaspora owczarzaki, a
  close unicellular relative of animals. The 1205-residue protein has a long, largely
  disordered N-terminal region, a LATS-type MOB-binding region, a C-terminal kinase
  domain with the conserved ATP-binding lysine and catalytic aspartate, and an AGC
  C-terminal extension carrying a predicted hydrophobic-motif phosphorylation site. In
  Capsaspora it acts in the Hippo pathway upstream of the Yorkie/YAP/TAZ ortholog coYki:
  cells lacking the coWts kinase domain show increased nuclear accumulation of coYki,
  more strongly than cells lacking the upstream kinase coHpo, consistent with
  cytoplasmic retention of coYki by Warts-dependent phosphorylation as in animals,
  although coWts kinase activity and coYki phosphorylation have not been measured
  directly. Loss of coWts does not increase proliferation (it slows growth in shaking
  culture) but produces a subpopulation of elongated cells that undergo a myosin-sensitive
  contractile behaviour, rescued by a coWts transgene, and within
  multicellular aggregates causes denser cell packing, reduced aggregate circularity and
  shorter filopodia. These phenotypes are mimicked by a hyperactive coYki that cannot be
  phosphorylated at its predicted Warts sites and require coYki's TEAD-binding residue,
  indicating that coWts shapes cytoskeletal behaviour and aggregate architecture by
  restraining coYki-dependent transcription.
existing_annotations:
- term:
    id: GO:0000166
    label: nucleotide binding
  evidence_type: IEA
  original_reference_id: GO_REF:0000104
  qualifier: enables
  supporting_entities:
  - UniRule:UR001503341
  review:
    summary: >-
      UniRule-based assignment from the protein kinase ATP-binding signature. coWts has
      a canonical protein kinase domain (residues 711-1045) with the PROSITE
      ATP-binding motif and the conserved lysine (K740).
    action: KEEP_AS_NON_CORE
    reason: >-
      Correct but uninformative: nucleotide binding is the parent of the ATP binding
      annotation already present, and ATP binding is itself only a component of the
      kinase activity. Kept as a true, non-core statement; no experimental nucleotide
      binding data exist.
    supported_by:
    - reference_id: file:CAPO3/coWts/coWts-uniprot.txt
      record_section: ["DR:PROSITE"]
      supporting_text: PROSITE; PS00107; PROTEIN_KINASE_ATP; 1.
- term:
    id: GO:0004672
    label: protein kinase activity
  evidence_type: IEA
  original_reference_id: GO_REF:0000002
  qualifier: enables
  supporting_entities:
  - InterPro:IPR008271
  review:
    summary: >-
      InterPro2GO from the Ser/Thr kinase active-site signature (IPR008271). The
      catalytic loop aspartate (D834, proton acceptor) is annotated as present.
    action: KEEP_AS_NON_CORE
    reason: >-
      Correct, but the more specific protein serine/threonine kinase activity term is
      also present and is the better description of a Warts/LATS AGC kinase. Kept as a
      true, less specific parent. Activity has not been assayed for coWts.
    supported_by:
    - reference_id: file:CAPO3/coWts/coWts-uniprot.txt
      record_section: ["DR:PROSITE"]
      supporting_text: PROSITE; PS00108; PROTEIN_KINASE_ST; 1.
- term:
    id: GO:0004674
    label: protein serine/threonine kinase activity
  evidence_type: IEA
  original_reference_id: GO_REF:0000120
  qualifier: enables
  supporting_entities:
  - ARBA:ARBA00027016
  - InterPro:IPR000961
  - EC:2.7.11.1
  - PANTHER:PTN001122925
  - UniRule:UR000416695
  review:
    summary: >-
      Combined IEA (ARBA, InterPro AGC C-terminal domain, EC 2.7.11.1, PANTHER,
      UniRule). coWts is the Capsaspora Warts/LATS ortholog: it has a LATS-type
      MOB-binding region (CDD cd21774), a kinase domain with intact ATP-binding lysine
      and catalytic aspartate, and an AGC C-terminal extension. In animals Warts/LATS
      phosphorylates Yorkie/YAP/TAZ on HXRXXS motifs; coYki carries four such motifs, and
      the non-phosphorylatable coYki 4SA mutant is nuclear and phenocopies the coWts
      knockout [PMID:35659869, PMID:38517944].
    action: ACCEPT
    reason: >-
      This is the core molecular activity of a Warts/LATS kinase and nothing in the
      sequence argues against it. The PANTHER component of this row comes from a node in
      PTHR22988 (Rho-effector kinase family) rather than the LATS clade, but
      serine/threonine kinase activity is shared by both families, so the misplacement
      does not affect this term. Note that no in vitro kinase assay or phosphorylation
      readout (phospho-specific antibody, Phos-tag) has been reported for coWts; the
      activity is inferred from domain conservation and the 4SA genetic mimicry, not
      measured.
    supported_by:
    - reference_id: file:CAPO3/coWts/coWts-uniprot.txt
      record_section: ["DR:CDD"]
      supporting_text: CDD; cd21774; MobB_LATS; 1.
    - reference_id: PMID:35659869
      supporting_text: >-
        In mammals and in Drosophila, YAP/TAZ/Yorkie is regulated by cytoplasmic
        sequestration in response to phosphorylation of HXRXXS motifs by the LATS/Warts
        kinases (Zheng and Pan, 2019).
    - reference_id: PMID:38517944
      supporting_text: >-
        These results suggest that the phenotypes observed in coHpo and coWts mutants are
        due to coYki activation resulting from a loss of upstream kinase signaling.
- term:
    id: GO:0005524
    label: ATP binding
  evidence_type: IEA
  original_reference_id: GO_REF:0000120
  qualifier: enables
  supporting_entities:
  - InterPro:IPR000719
  - InterPro:IPR000961
  - InterPro:IPR017441
  - UniRule:UR001503341
  review:
    summary: >-
      Domain-based assignment from the protein kinase domain and its ATP-binding
      signature (K740).
    action: ACCEPT
    reason: >-
      Kinase domain with conserved glycine-rich loop/ATP-binding lysine; ATP binding is
      required for the predicted catalytic activity. Accepted as a sound domain-level
      inference, although ATP binding has not been measured.
    supported_by:
    - reference_id: file:CAPO3/coWts/coWts-uniprot.txt
      record_section: ["DR:InterPro"]
      supporting_text: InterPro; IPR017441; Protein_kinase_ATP_BS.
- term:
    id: GO:0005737
    label: cytoplasm
  evidence_type: IEA
  original_reference_id: GO_REF:0000120
  qualifier: located_in
  supporting_entities:
  - ARBA:ARBA00026971
  - UniProtKB-SubCell:SL-0086
  - PANTHER:PTN001122925
  review:
    summary: >-
      Combined ARBA/SubCell/PANTHER inference. The localization of coWts protein has not
      been examined. Its inferred substrate, coYki, is retained in the cytoplasm in
      wild-type cells and becomes nuclear when coWts is lost [PMID:38517944], consistent
      with coWts acting in the cytoplasm as Warts/LATS does in animals.
    action: ACCEPT
    reason: >-
      Cytoplasm is the expected compartment for a Warts/LATS kinase, which retains its
      substrate in the cytoplasm. The term is broad enough to be safe without direct
      localization data. Accepted as a homology-based location; it should be confirmed
      by tagging coWts.
    supported_by:
    - reference_id: PMID:38517944
      supporting_text: >-
        Together, these results show that the Capsaspora Hippo kinase cascade regulates
        coYki by cytoplasmic sequestration, indicating a premetazoan origin of this
        regulatory activity of the Hippo pathway.
- term:
    id: GO:0005856
    label: cytoskeleton
  evidence_type: IEA
  original_reference_id: GO_REF:0000118
  qualifier: located_in
  supporting_entities:
  - PANTHER:PTN001122925
  review:
    summary: >-
      TreeGrafter transfer from PANTHER node PTN001122925. TreeGrafter places coWts in
      PTHR22988:SF71 "CITRON RHO-INTERACTING KINASE" (family PTHR22988, whose human
      members are ROCK1/2, MRCKs and CIT), not in the LATS clade where human LATS1/2 sit
      (PTHR24356). No localization of coWts has been reported.
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      The cytoskeletal location is characteristic of the Rho-effector kinases of
      PTHR22988, and reaches coWts because of the family placement rather than
      anything known about Warts/LATS. coWts's MOB-binding region and C-terminal kinase
      domain identify it as a LATS kinase. Animal LATS kinases are cytoplasmic with some
      cortical/centrosomal pools, so an association with cytoskeletal structures cannot
      be ruled out, but there is no evidence for it here. Not removed outright because
      the term is not demonstrably false.
    supported_by:
    - reference_id: file:CAPO3/coWts/coWts-uniprot.txt
      record_section: ["DR:PANTHER"]
      supporting_text: PANTHER; PTHR22988:SF71; CITRON RHO-INTERACTING KINASE; 1.
    - reference_id: file:CAPO3/coWts/coWts-uniprot.txt
      record_section: ["DR:CDD"]
      supporting_text: CDD; cd21774; MobB_LATS; 1.
    propagation_review:
      root_cause: PROPAGATION_BAD
      failure_modes:
      - WRONG_ORTHOLOG_OR_PARALOG
      source_entities:
      - source_id: PANTHER:PTN001122925
        source_status: SUPPORTS_SOURCE_BUT_NOT_TARGET
        comment: >-
          TreeGrafter node in PTHR22988 (Rho-effector kinases); its cytoskeleton and
          actomyosin terms fit ROCK/MRCK/citron, while coWts is a Warts/LATS kinase whose
          human orthologs LATS1/2 are in PTHR24356 and receive IBAs from LATS node
          PTN002390470.
- term:
    id: GO:0007010
    label: cytoskeleton organization
  evidence_type: IEA
  original_reference_id: GO_REF:0000117
  qualifier: involved_in
  supporting_entities:
  - ARBA:ARBA00026736
  review:
    summary: >-
      ARBA machine-learning rule. In Capsaspora, coWts knockout cells show a
      subpopulation of elongated, contractile cells (rescued by a coWts transgene) and
      shorter filopodia within aggregates [PMID:38517944]. These effects are phenocopied
      by hyperactive coYki and require coYki transcriptional activity.
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      coWts influences cytoskeletal behaviour, but indirectly: the phenotypes are
      attributed to derepressed coYki-dependent transcription, not to coWts acting on
      cytoskeletal structures. By the participation test, coWts does not do the work of
      assembling or arranging the cytoskeleton. Process terms describing the signalling
      role (hippo signaling) capture its function better. The F-actin, blebbistatin and
      latrunculin analyses were also performed in the coHpo mutant rather than coWts.
    supported_by:
    - reference_id: PMID:38517944
      supporting_text: >-
        This result indicates that these phenotypes are mediated by the transcriptional
        activity of coYki.
    - reference_id: PMID:38517944
      supporting_text: >-
        As contractile cells in the coHpo mutant background tended to show a more
        elongated morphology than the coWts mutant, we focused on the coHpo mutant for
        further analysis.
- term:
    id: GO:0016301
    label: kinase activity
  evidence_type: IEA
  original_reference_id: GO_REF:0000104
  qualifier: enables
  supporting_entities:
  - UniRule:UR000416695
  review:
    summary: UniRule assignment of the general kinase activity parent term.
    action: KEEP_AS_NON_CORE
    reason: >-
      True but redundant with the more specific protein serine/threonine kinase activity
      annotation. Kept as a non-core parent.
    supported_by:
    - reference_id: file:CAPO3/coWts/coWts-uniprot.txt
      record_section: ["DR:PROSITE"]
      supporting_text: PROSITE; PS50011; PROTEIN_KINASE_DOM; 1.
- term:
    id: GO:0016740
    label: transferase activity
  evidence_type: IEA
  original_reference_id: GO_REF:0000104
  qualifier: enables
  supporting_entities:
  - UniRule:UR000416695
  review:
    summary: UniRule assignment of the very general transferase activity term.
    action: KEEP_AS_NON_CORE
    reason: >-
      True (a kinase transfers phosphate) but far too general to be informative.
      Kept as a non-core parent of protein serine/threonine kinase activity.
    supported_by:
    - reference_id: file:CAPO3/coWts/coWts-uniprot.txt
      record_section: ["DR:PROSITE"]
      supporting_text: PROSITE; PS50011; PROTEIN_KINASE_DOM; 1.
- term:
    id: GO:0031032
    label: actomyosin structure organization
  evidence_type: IEA
  original_reference_id: GO_REF:0000118
  qualifier: involved_in
  supporting_entities:
  - PANTHER:PTN001122925
  review:
    summary: >-
      TreeGrafter transfer from PANTHER node PTN001122925 in PTHR22988, the
      ROCK/MRCK/citron Rho-effector kinase family, whose members directly phosphorylate
      myosin light chain and regulators of actomyosin. coWts is a Warts/LATS kinase
      (MOB-binding region, C-terminal kinase domain) that falls into this family's HMM
      while its human orthologs LATS1/2 are classified in PTHR24356. The coWts knockout
      does show a myosin-sensitive contractile cell behaviour and denser
      aggregates [PMID:38517944], but actomyosin structures were imaged and perturbed
      only in coHpo mutants and wild type, and the phenotypes are attributed to coYki
      transcription.
    action: REMOVE
    reason: >-
      The term comes from a family-level placement with the Rho-effector kinases, which
      do organize actomyosin directly; it is not inherited from the Warts/LATS lineage.
      The Capsaspora data do not rescue it: coWts loss increases a contractile behaviour
      through coYki-dependent transcription (phenocopied by coYki 4SA, abolished by the
      TEAD-binding F123A mutation), there was no epistasis test, and the authors state
      that the role of myosin in these phenotypes remains unclear. coWts therefore acts
      upstream of, not in, actomyosin structure organization. This is the
      Track C pattern of a family-specific cytoskeletal process term transferred to a
      unicellular protein through a misassigned family.
    supported_by:
    - reference_id: file:CAPO3/coWts/coWts-uniprot.txt
      record_section: ["DR:PANTHER"]
      supporting_text: PANTHER; PTHR22988; MYOTONIC DYSTROPHY S/T KINASE-RELATED; 1.
    - reference_id: PMID:38517944
      supporting_text: >-
        This result indicates that these phenotypes are mediated by the transcriptional
        activity of coYki.
    - reference_id: PMID:38517944
      supporting_text: >-
        Thus the specific role of myosin activity in the phenotypes observed in Hippo
        pathway mutants in Capsaspora remains unclear.
    propagation_review:
      root_cause: PROPAGATION_BAD
      failure_modes:
      - WRONG_ORTHOLOG_OR_PARALOG
      - ROLE_CONFLATION
      source_entities:
      - source_id: PANTHER:PTN001122925
        source_status: SUPPORTS_SOURCE_BUT_NOT_TARGET
        comment: >-
          PTHR22988 node (ROCK/MRCK/citron family); actomyosin organization is a direct
          activity of those Rho-effector kinases, but coWts belongs to the Warts/LATS
          clade, which acts on actomyosin only indirectly via Yorkie.
- term:
    id: GO:0071944
    label: cell periphery
  evidence_type: IEA
  original_reference_id: GO_REF:0000117
  qualifier: located_in
  supporting_entities:
  - ARBA:ARBA00027443
  review:
    summary: >-
      ARBA machine-learning rule. In animals Warts/LATS is recruited to the plasma
      membrane by Mats/MOB1 and Merlin/Kibra during activation; Capsaspora encodes Kibra
      and Merlin orthologs. The localization of coWts itself has not been examined.
    action: UNDECIDED
    reason: >-
      A membrane-proximal pool is plausible for a Warts/LATS kinase, but there are no
      Capsaspora data for or against it, and the rule-based assignment is not
      specific to the LATS clade. Neither acceptance nor removal is justified without
      localization of tagged coWts.
    supported_by:
    - reference_id: PMID:38517944
      supporting_text: >-
        The Capsaspora genome encodes all components of the core Hippo pathway as well as
        some conserved upstream Hippo pathway regulators such as Kibra and NF2/Merlin
- term:
    id: GO:1900181
    label: negative regulation of protein localization to nucleus
  evidence_type: IEA
  original_reference_id: GO_REF:0000117
  qualifier: involved_in
  supporting_entities:
  - ARBA:ARBA00092942
  review:
    summary: >-
      ARBA rule. Directly supported in Capsaspora: in coWts knockout cells mScarlet-coYki
      is nuclear in most cells, whereas it is predominantly cytoplasmic in wild type; the
      effect is stronger than in coHpo knockouts [PMID:38517944].
    action: ACCEPT
    reason: >-
      Restraining nuclear entry of Yorkie/YAP/TAZ is the canonical output of Warts/LATS
      and is shown genetically for coWts by the knockout (IMP-grade evidence from
      PMID:38517944, recorded here rather than as a duplicate row). Caveat: the mechanism (phosphorylation of coYki) is inferred from the 4SA mutant, not
      measured.
    supported_by:
    - reference_id: PMID:38517944
      supporting_text: >-
        In contrast, the majority of coHpo-/- and coWts-/- cells showed nuclear levels of
        mScarlet-coYki greater than or equal to that seen in the cytoplasm (Figure 1C and
        D).
- term:
    id: GO:0035329
    label: hippo signaling
  evidence_type: IMP
  original_reference_id: PMID:38517944
  review:
    summary: >-
      coWts is the Capsaspora Warts/LATS kinase of the Hippo cascade. Its knockout
      releases coYki to the nucleus, and its cytoskeletal and aggregate phenotypes are
      phenocopied by coYki 4SA (predicted Warts sites mutated) in a TEAD-binding-dependent
      manner, matching the canonical Hpo-Wts-Yki-Sd output.
    action: NEW
    reason: >-
      Participation test: Warts/LATS performs a step of the cascade (phosphorylation
      of Yorkie), so it is a participant rather than a regulated target. Comparator check:
      Drosophila wts and human LATS1/LATS2 carry GO:0035329 (experimental and IBA from
      LATS node PTN002390470). coWts received no hippo signaling IEA/IBA only because
      TreeGrafter placed it in PTHR22988 rather than the LATS clade. The IMP rests on
      the pathway readout (coYki nuclear localization) and the 4SA phenocopy. Limits:
      coHpo-to-coWts and coWts-to-coYki phosphorylation were not shown, and coWts
      may also have coHpo-independent activity.
    additional_reference_ids:
    - PMID:35659869
    supported_by:
    - reference_id: PMID:38517944
      supporting_text: >-
        Together, these results show that the Capsaspora Hippo kinase cascade regulates
        coYki by cytoplasmic sequestration, indicating a premetazoan origin of this
        regulatory activity of the Hippo pathway.
    - reference_id: PMID:38517944
      supporting_text: >-
        These results suggest that the phenotypes observed in coHpo and coWts mutants are
        due to coYki activation resulting from a loss of upstream kinase signaling.
    - reference_id: PMID:35659869
      supporting_text: >-
        In contrast, the majority of cells transfected with mScarlet-coYki 4SA showed
        uniform mScarlet signal throughout the cell or enriched mScarlet signal in the
        nucleus (Figure 5C and F).
core_functions:
- description: >-
    Warts/LATS-family serine/threonine kinase of the Capsaspora Hippo pathway that keeps
    the Yorkie/YAP/TAZ ortholog coYki in the cytoplasm, thereby restraining
    coYki-dependent transcription that otherwise induces a contractile elongated cell
    behaviour and denser cell packing within aggregates. Catalytic activity and coYki
    phosphorylation are inferred from domain conservation and the phenotype of a
    non-phosphorylatable coYki mutant; they have not been measured biochemically.
  molecular_function:
    id: GO:0004674
    label: protein serine/threonine kinase activity
  directly_involved_in:
  - id: GO:0035329
    label: hippo signaling
  - id: GO:1900181
    label: negative regulation of protein localization to nucleus
  locations:
  - id: GO:0005737
    label: cytoplasm
  supported_by:
  - reference_id: file:CAPO3/coWts/coWts-uniprot.txt
    record_section: ["DR:CDD"]
    supporting_text: CDD; cd21774; MobB_LATS; 1.
  - reference_id: PMID:38517944
    supporting_text: >-
      In contrast, the majority of coHpo-/- and coWts-/- cells showed nuclear levels of
      mScarlet-coYki greater than or equal to that seen in the cytoplasm (Figure 1C and
      D).
  - reference_id: PMID:38517944
    supporting_text: >-
      These results suggest that the phenotypes observed in coHpo and coWts mutants are
      due to coYki activation resulting from a loss of upstream kinase signaling.
  - reference_id: PMID:38517944
    supporting_text: >-
      This result indicates that these phenotypes are mediated by the transcriptional
      activity of coYki.
suggested_questions:
- question: >-
    Does coWts phosphorylate coYki on its HXRXXS motifs in vitro and in cells, and does
    coHpo phosphorylate coWts on its activation-loop and hydrophobic-motif sites?
- question: >-
    Why is the coYki nuclear-localization phenotype stronger in coWts than in coHpo
    mutants - which kinases (e.g. other STE20/MAP4K-like kinases) activate coWts
    independently of coHpo?
- question: >-
    Where is coWts located in Capsaspora cells (cytoplasm, cortex, filopodia, adhesion
    foci), and is it recruited to membranes by Mats/MOB, Kibra or Merlin orthologs?
- question: >-
    Should PANTHER place Warts/LATS orthologs such as coWts and Drosophila wts in
    PTHR24356 with human LATS1/2 rather than in PTHR22988 (Rho-effector kinases), so
    that they inherit the LATS-node IBAs (hippo signaling) instead of the
    ROCK/citron actomyosin terms?
- question: >-
    Which coYki target genes (e.g. the actin-binding and laminin G-domain genes shared
    among the coHpo, coWts and coYki RNA-seq sets) mediate the contractile behaviour and
    cell-packing phenotype?
- question: >-
    What explains the slower growth of coWts mutants in shaking culture - a
    coYki-independent function of coWts, or a viability effect of coYki hyperactivity?
suggested_experiments:
- hypothesis: coWts is an active kinase that phosphorylates coYki at its predicted Warts sites.
  description: >-
    In vitro kinase assay with immunopurified wild-type versus kinase-dead (K740A or
    D834A) coWts on recombinant coYki and coYki 4SA, plus Phos-tag or phospho-specific
    immunoblots of coYki in wild-type and coWts-/- Capsaspora cells.
  experiment_type: biochemical kinase assay
- hypothesis: Kinase activity, not only the protein scaffold, is required for coWts function.
  description: >-
    Complement coWts-/- cells with wild-type versus kinase-dead coWts and score coYki
    nuclear localization, elongated-cell frequency and aggregate cell density.
  experiment_type: genetic complementation
- hypothesis: coWts acts upstream of coYki for all scored phenotypes.
  description: >-
    Construct coWts coYki double mutants (once sequential marker recycling is
    available) or deplete coYki in coWts-/- cells and test whether contractile
    behaviour, cell packing and the filopodial defect are suppressed.
  experiment_type: genetic epistasis
- hypothesis: coWts localizes to the cell cortex or adhesion foci.
  description: >-
    Express fluorescently tagged coWts from its endogenous locus or at low levels and
    image together with Lifeact and membrane (NMM) markers in adherent cells and
    aggregates.
  experiment_type: localization / imaging
references:
- id: GO_REF:0000002
  title: Gene Ontology annotation through association of InterPro records with GO
    terms
  findings: []
- id: GO_REF:0000104
  title: Electronic Gene Ontology annotations created by transferring manual GO annotations
    between related proteins based on shared sequence features
  findings: []
- id: GO_REF:0000117
  title: Electronic Gene Ontology annotations created by ARBA machine learning models
  findings: []
- id: GO_REF:0000118
  title: TreeGrafter-generated GO annotations
  findings: []
- id: GO_REF:0000120
  title: Combined Automated Annotation using Multiple IEA Methods
  findings: []
- id: file:CAPO3/coWts/coWts-uniprot.txt
  title: UniProt record for coWts (A0A0D2VGR4)
  findings:
  - statement: >-
      coWts has a LATS-type MOB-binding region, a protein kinase domain with intact
      ATP-binding and catalytic residues, and an AGC C-terminal domain.
    record_section: ["DR:CDD"]
    supporting_text: CDD; cd21774; MobB_LATS; 1.
  - statement: >-
      PANTHER/TreeGrafter classifies coWts in the citron Rho-interacting kinase
      subfamily of the Rho-effector kinase family, not with human LATS1/2.
    record_section: ["DR:PANTHER"]
    supporting_text: PANTHER; PTHR22988:SF71; CITRON RHO-INTERACTING KINASE; 1.
- id: PMID:38517944
  title: The Hippo kinase cascade regulates a contractile cell behavior and cell density
    in a close unicellular relative of animals.
  reference_review:
    relevance: HIGH
    correctness: VERIFIED
    review_notes: >-
      Primary paper for coWts; full text cached. Methods name the targeted gene as coWts
      (CAOG_00619); NCBI RefSeq XP_004365490.1 carries locus_tag CAOG_00619 and is
      cross-referenced by UniProt A0A0D2VGR4 (new tag CAOG_000619). Reports knockout,
      coYki localization, proliferation, cell morphology, aggregate and RNA-seq data.
      No biochemical kinase or phosphorylation measurements.
  findings:
  - statement: The coWts kinase domain was deleted from both alleles.
    supporting_text: >-
      For each gene, homologous recombination was used to replace the kinase domain of
      both WT alleles with selectable markers
  - statement: coWts loss increases nuclear coYki, more strongly than coHpo loss.
    supporting_text: >-
      Interestingly, we found that coWts-/- cells were significantly more likely to
      show nuclear mScarlet-coYki localization than coHpo-/- cells (Figure 1D)
  - statement: coWts is not a negative regulator of proliferation in Capsaspora.
    supporting_text: >-
      this result suggests that coWts is not a negative regulator of cell proliferation
      as in Drosophila and mammals, but instead is required for normal cell viability
      under some growth conditions
  - statement: >-
      coWts loss produces elongated contractile cells, rescued by a coWts transgene.
    supporting_text: >-
      The presence of elongated cells was rescued by transgenic expression of coHpo or
      coWts in the respective mutant (Figure 3A and B), demonstrating that the elongated
      cell phenotype was specifically due to the absence of these kinases.
  - statement: coWts mutant aggregates are less circular and more densely packed.
    supporting_text: >-
      Whereas the number of cells per unit area in coYki -/- aggregates was not
      significantly different from WT, the number of cells per area in coHpo -/- and
      coWts -/- was significantly increased relative to WT (Figure 5E).
  - statement: coWts mutant cells have shorter filopodia within aggregates.
    supporting_text: >-
      Whereas filopodia from coHpo -/- cells resembled those of WT and often extended
      more than a cell diameter distance within the aggregate, filopodia from coWts -/-
      cells were much shorter
  - statement: >-
      The phenotypes depend on coYki transcriptional activity; epistasis could not be
      tested.
    supporting_text: >-
      Since techniques are currently unavailable to create double mutants in
      Capsaspora, we could not test this possibility through classic genetic epistasis.
- id: PMID:35659869
  title: Genome editing in the unicellular holozoan Capsaspora owczarzaki suggests a
    premetazoan role for the Hippo pathway in multicellular morphogenesis.
  reference_review:
    relevance: MEDIUM
    correctness: VERIFIED
    review_notes: >-
      coYki knockout paper; establishes that coYki with its predicted Warts sites mutated
      (4SA) is nuclear, the basis for inferring coWts substrate and mechanism. coWts
      itself is not studied.
  findings:
  - statement: >-
      coYki with its four predicted Warts/LATS phosphorylation sites mutated is
      enriched in the nucleus.
    supporting_text: >-
      In contrast, the majority of cells transfected with mScarlet-coYki 4SA showed
      uniform mScarlet signal throughout the cell or enriched mScarlet signal in the
      nucleus (Figure 5C and F).
- id: PMID:22832104
  title: Premetazoan origin of the hippo signaling pathway.
  reference_review:
    relevance: LOW
    correctness: VERIFIED
    review_notes: >-
      Identifies the Capsaspora Hippo pathway components including a Wts homolog and
      tests Co-Yki, Co-Sd and Co-Hpo in Drosophila. Capsaspora Wts was aligned but not
      functionally tested; Co-Hpo phosphorylated Drosophila Wts.
  findings:
  - statement: Wts homologs are present across opisthokonts.
    supporting_text: >-
      Likewise, Wts homologues are present along all opisthokonts, except maybe for the
      ichthyosporeans, where the incompleteness of genome data makes it difficult to
      ensure its absence.
- id: PMID:38729842
  title: 'Assembling a Hippo: the evolutionary emergence of an animal developmental
    signaling pathway.'
  reference_review:
    relevance: LOW
    correctness: VERIFIED
    review_notes: Review; summarizes the coWts knockout phenotypes without new data.
  findings:
  - statement: >-
      Deleting coWts does not increase proliferation but increases an
      actomyosin-mediated contractile behaviour.
    supporting_text: >-
      Consistent with this result, targeted deletion of either Capsaspora Hippo (coHpo)
      or Capsaspora Warts (coWts) does not increase cell proliferation, but greatly
      increases the rate of occurrence of an actomyosin-mediated contractile behavior
      displayed by cells [66] (Figure 3A).
