snapshot_type: uniprot_record_evidence_extract archive: repository: https://github.com/ai4curation/uniprot-orphan-analysis commit: f6a331cb47f61256ad070bbaa75567094ef64e8a extraction: Original source line ranges with two context lines; not complete records. Structured fields are selected from the same archived snapshots. Sequence values are replaced by lengths and SHA-256 digests. sources: - url: https://rest.uniprot.org/uniprotkb/A6Q0K5.json retrieved_at: '2026-10-18T23:38:45.566064+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/uniprotkb/A0A2K3DI03.json retrieved_at: '2026-10-18T23:38:46.129295+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/proteomes/UP000006906.json retrieved_at: '2026-10-18T23:38:47.116798+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/A6Q0K5?format=txt&versions=31 retrieved_at: '2026-10-18T23:38:49.928166+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/A6Q0K5?format=txt&versions=49 retrieved_at: '2026-10-18T23:38:53.634750+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/A6Q0K5?format=txt&versions=65 retrieved_at: '2026-10-18T23:38:55.437361+00:00' uniprot_release: '2026_03' observations: primary_accession: A6Q0K5 alternative_accession: A0A2K3DI03 sequence_identical: false primary_sequence_length: 107 alternative_sequence_length: 131 shared_uniparc_id: null same_taxon: true reference_proteome: UP000006906 proteome_is_reference: true proteome_taxon_matches: true primary_in_reference_proteome: false alternative_in_reference_proteome: true searched_reference_proteomes: - UP000006906 primary_in_any_reference_proteome: false sampled_history_versions: - 31 - 49 - 65 sampled_versions_with_proteome_links: - 31 current_records: - primaryAccession: A6Q0K5 entryType: UniProtKB reviewed (Swiss-Prot) entryAudit: firstPublicDate: '2007-09-11' lastAnnotationUpdateDate: '2026-09-02' lastSequenceUpdateDate: '2012-05-16' entryVersion: 69 sequenceVersion: 2 genes: - geneName: value: CP12 orfNames: - value: CHLREDRAFT_148487 organism: scientificName: Chlamydomonas reinhardtii taxonId: 3055 sequence: length: 107 sha256: 6d043a11e13d2e22450648dda7badb64c8347b1bbf2a3407915ee60163579a99 uniProtKBCrossReferences: [] - primaryAccession: A0A2K3DI03 entryType: UniProtKB unreviewed (TrEMBL) entryAudit: firstPublicDate: '2018-03-28' lastAnnotationUpdateDate: '2026-09-02' lastSequenceUpdateDate: '2018-03-28' entryVersion: 25 sequenceVersion: 1 genes: - orfNames: - evidences: - evidenceCode: ECO:0000313 source: EMBL id: PNW80155.1 value: CHLRE_08g380250v5 organism: scientificName: Chlamydomonas reinhardtii taxonId: 3055 sequence: length: 131 sha256: 7d102cff0160d01a07ca0815660989d3487e55474ae75dd0e9e8713e0c499821 uniProtKBCrossReferences: - database: Gramene id: PNW80155 properties: - key: ProteinId value: PNW80155 - key: GeneId value: CHLRE_08g380250v5 - database: Proteomes id: UP000006906 properties: - key: Component value: Chromosome 8 reference_proteomes: - id: UP000006906 proteomeType: Reference proteome taxonomy: scientificName: Chlamydomonas reinhardtii synonyms: - Chlamydomonas smithii taxonId: 3055 mnemonic: CHLRE unisave_records: - entry_version: 31 url: https://rest.uniprot.org/unisave/A6Q0K5?format=txt&versions=31 entry_date: 11-NOV-2015, entry version 31. proteomes: - UP000006906 reference_proteome_keyword: true record_text: '' - entry_version: 49 url: https://rest.uniprot.org/unisave/A6Q0K5?format=txt&versions=49 entry_date: 07-OCT-2020, entry version 49. proteomes: [] reference_proteome_keyword: false record_text: '' - entry_version: 65 url: https://rest.uniprot.org/unisave/A6Q0K5?format=txt&versions=65 entry_date: 27-NOV-2024, entry version 65. proteomes: [] reference_proteome_keyword: false record_text: '' archived_sources: - path: genes/CHLRE/CP12/CP12-record-evidence.yaml url: https://github.com/ai4curation/uniprot-orphan-analysis/blob/f6a331cb47f61256ad070bbaa75567094ef64e8a/genes/CHLRE/CP12/CP12-record-evidence.yaml sha256: d8687e2f37920acfe93dd684cf23dbf58b936196f8a1eb1c56a5ea75ca4f6098 excerpts: - start_line: 26 end_line: 38 text: |2 alternative_sequence_length: 131 shared_uniparc_id: null same_taxon: true reference_proteome: UP000006906 proteome_is_reference: true proteome_taxon_matches: true primary_in_reference_proteome: false alternative_in_reference_proteome: true searched_reference_proteomes: - UP000006906 primary_in_any_reference_proteome: false sampled_history_versions: - 31 - start_line: 497 end_line: 501 text: |2 value: Genomic_DNA - database: RefSeq id: XP_001694345.2 properties: - key: NucleotideSequenceId - start_line: 947 end_line: 951 text: |2 value: Genomic_DNA - database: RefSeq id: XP_001694345.2 properties: - key: NucleotideSequenceId - start_line: 1524 end_line: 1530 text: | - entry_version: 31 url: https://rest.uniprot.org/unisave/A6Q0K5?format=txt&versions=31 entry_date: 11-NOV-2015, entry version 31. proteomes: - UP000006906 reference_proteome_keyword: true record_text: | - start_line: 1673 end_line: 1678 text: | - entry_version: 49 url: https://rest.uniprot.org/unisave/A6Q0K5?format=txt&versions=49 entry_date: 07-OCT-2020, entry version 49. proteomes: [] reference_proteome_keyword: false record_text: | - start_line: 1830 end_line: 1835 text: | - entry_version: 65 url: https://rest.uniprot.org/unisave/A6Q0K5?format=txt&versions=65 entry_date: 27-NOV-2024, entry version 65. proteomes: [] reference_proteome_keyword: false record_text: | - path: genes/CHLRE/CP12/CP12-bioinformatics/reference-counterparts/comparison.yaml url: https://github.com/ai4curation/uniprot-orphan-analysis/blob/f6a331cb47f61256ad070bbaa75567094ef64e8a/genes/CHLRE/CP12/CP12-bioinformatics/reference-counterparts/comparison.yaml sha256: bc41730afd427f061b06d5cfcf131cc1b75e76679f4785c32902c0c8666364ca excerpts: - start_line: 25 end_line: 29 text: |2 - -v - '1' target_sequence_count: 18840 query_sha256: 264a89142e640e0fb64713881fa60cc0089dbeb943b56aaf5428671f96ef96c8 targets_sha256: 3f9cb5324b0a7201c253b79f9e4e63a593691319ade81d6158597cd3efe93552 - start_line: 44 end_line: 48 text: |2 sha256: 3f9cb5324b0a7201c253b79f9e4e63a593691319ade81d6158597cd3efe93552 detailed_alignment_limit: 10 candidate_count: 1 candidates: - accession: A0A2K3DI03 - start_line: 52 end_line: 63 text: |2 bit_score: 207.0 global_score: 519.5 query_length: 107 target_length: 131 alignment_columns: 131 identities: 107 mismatches: 0 gap_columns: 24 identity_percent: 81.6794 query_coverage_percent: 100.0 target_coverage_percent: 81.6794 substitutions: [] comparison: provenance: query_accession: A6Q0K5 run_at: '2026-10-18T23:33:03.057131+00:00' biopython_version: '1.85' mmseqs_version: 18-8cc5c command: - mmseqs - easy-search - genes/CHLRE/CP12/CP12-bioinformatics/reference-counterparts/query.fasta - .cache/orphan-curated/UP000006906.fasta - genes/CHLRE/CP12/CP12-bioinformatics/reference-counterparts/search.tsv - genes/CHLRE/CP12/CP12-bioinformatics/reference-counterparts/tmp - --threads - '4' - -s - '7.5' - -e - 1e-5 - --max-seqs - '1000' - --format-output - query,target,pident,alnlen,qstart,qend,qlen,tstart,tend,tlen,evalue,bits - --remove-tmp-files - '1' - -v - '1' target_sequence_count: 18840 query_sha256: 264a89142e640e0fb64713881fa60cc0089dbeb943b56aaf5428671f96ef96c8 targets_sha256: 3f9cb5324b0a7201c253b79f9e4e63a593691319ade81d6158597cd3efe93552 global_alignment: mode: global matrix: BLOSUM62 open_gap: -10 extend_gap: -0.5 terminal_gaps_penalized: true identity_denominator: All global alignment columns, including gaps coverage_denominator: Full query/target length; numerator is paired nongap residues limitation: MMseqs2 heuristic search; no guarantee of exhaustive retrieval or locus equivalence target_source: url: https://rest.uniprot.org/uniprotkb/stream?query=proteome%3AUP000006906&format=fasta retrieved_at: '2026-10-18T23:32:17.496537+00:00' uniprot_release: '2026_03' sequence_count: 18840 sha256: 3f9cb5324b0a7201c253b79f9e4e63a593691319ade81d6158597cd3efe93552 detailed_alignment_limit: 10 candidate_count: 1 retained_alignment_count: 1 candidates: - accession: A0A2K3DI03 description: tr|A0A2K3DI03|A0A2K3DI03_CHLRE CP12 domain-containing protein OS=Chlamydomonas reinhardtii OX=3055 GN=CHLRE_08g380250v5 PE=4 SV=1 evalue: 1.667e-62 bit_score: 207.0 global_score: 519.5 query_length: 107 target_length: 131 alignment_columns: 131 identities: 107 mismatches: 0 gap_columns: 24 identity_percent: 81.6794 query_coverage_percent: 100.0 target_coverage_percent: 81.6794