RBMP2

UniProt ID: A0A2K3DG19
Organism: Chlamydomonas reinhardtii
Review Status: COMPLETE
Aliases:
Rubisco-binding membrane protein 2 Cre09.g416850 CHLRE_09g416850v5
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Gene Description

RBMP2 (Rubisco-binding membrane protein 2; locus Cre09.g416850) is a large (1690 residues, about 165 kDa), nuclear-encoded membrane protein of the chloroplast pyrenoid in the green alga Chlamydomonas reinhardtii. It has an N-terminal region predicted to contact membranes, a central rhodanese-like domain flanked on both sides by predicted transmembrane helices, and a long disordered C-terminal region with six Rubisco-binding motifs, the last at the exact C-terminus. The rhodanese-like domain is non-catalytic: it contains no cysteine, and an aspartate occupies the position of the catalytic cysteine of sulfurtransferases and CDC25 phosphatases. RBMP2 resides in the pyrenoid tubules, the thylakoid-derived membranes that cross the Rubisco matrix, and is concentrated in their central reticulated region. It builds that region. In rbmp2 mutants the cylindrical tubules still enter the matrix but often end bluntly before the centre, the narrow reticulated network is absent, the lumenal carbonic anhydrase CAH3 is mislocalized to the matrix periphery, and growth at very low CO2 is impaired. Overexpression enlarges the reticulated region. Domain deletions separate two steps: the rhodanese-like domain is needed for tubules to extend to the centre, and the membrane-contact and transmembrane regions are needed to convert them into narrow reticulated tubules. The Rubisco-binding motifs bind Rubisco as peptides but are dispensable for forming the reticulated region. RBMP2 was first proposed to tether the Rubisco matrix to the tubules, but its demonstrated role is in shaping the tubule membranes that position CAH3 for CO2 release near Rubisco.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0160223 pyrenoid tubule
IDA
PMID:33177094
Assembly of the algal CO(2)-fixing organelle, the pyrenoid, ...
NEW
Summary: Venus-tagged RBMP2 localizes to the pyrenoid tubules, specifically the central reticulated region (Meyer et al. 2020). Wu et al. 2026 confirm reticulated-region localization of a complementing RBMP2-Venus by expansion microscopy.
Reason: GOA has no annotations for this protein. Pyrenoid tubule is the best-supported, most specific location, shown by two independent imaging studies with a functional (complementing) fusion.
Supporting Evidence:
PMID:33177094
Fluorescently tagged RBMP1 and RBMP2 localized to the tubules
PMID:33177094
Our microscopy data suggest that RBMP2 is confined to the central reticulated region of the tubules
PMID:42427617
In wild-type cells overexpressing RBMP2-Venus, we observed by ExM that RBMP2-Venus localized throughout an enlarged reticulated region (Fig. 2g).
GO:0010027 thylakoid membrane organization
IMP
PMID:42427617
RBMP2 shapes specialized membranes for CO(2) delivery in the...
NEW
Summary: RBMP2 is required to form the reticulated region of the pyrenoid tubules, which are thylakoid-derived. Without it, tubules end bluntly before the centre and the reticulated network is absent; complementation restores it, and overexpression enlarges it. The membrane-contact and transmembrane regions are needed to convert tubules into narrow reticulated tubules, and the rhodanese domain is needed for their extension.
Reason: Participation test. RBMP2 is an integral component of the very membranes that are reshaped, its own membrane-contact and transmembrane regions are needed for the shape change, and raising its level enlarges the region, so it contributes structure to the step rather than being merely required for it. Comparator check. The other tubule biogenesis factors in this system, SAGA1 and MITH1, carry the same term in their reviews. GO has no pyrenoid-tubule-specific organization term, and thylakoid membrane organization, which results in the organization of the thylakoid membrane from which the tubules derive, is the closest fit. The source is a not-yet-peer-reviewed preprint, but it includes complementation, overexpression and three imaging methods.
Supporting Evidence:
PMID:42427617
Together, these results indicate that RBMP2 is required for reticulated-region formation.
PMID:42427617
Thus, RBMP2 is not only required for reticulated-region formation; overexpressing the RBMP2 protein is sufficient to promote the expansion of the reticulated region in wild-type cells.
PMID:42427617
MCP and TM domains are not required for cylindrical tubule elongation. Instead, they are required to convert elongated cylindrical tubules into reticulated-region tubules.

Core Functions

Builds the central reticulated region of the pyrenoid tubules. As an integral membrane protein of the tubules, RBMP2 is needed for the cylindrical tubules to extend to the pyrenoid centre (a step that needs its non-catalytic rhodanese domain) and for converting them into the narrow, minitubule-free reticulated network (a step that needs its membrane-contact and transmembrane regions). This network holds the carbonic anhydrase CAH3 near the middle of the Rubisco matrix. No molecular activity is asserted. Membrane bending by the membrane-contact region and a transmembrane hairpin is proposed but not tested, and the rhodanese domain lacks the catalytic cysteine. Its six Rubisco-binding motifs bind Rubisco as peptides but are not needed for the reticulated region, and a tether role is not established.

Directly Involved In:
Cellular Locations:
Supporting Evidence:
  • PMID:42427617
    Together, these results indicate that RBMP2 is required for reticulated-region formation.
  • PMID:42427617
    These results suggest that the RHO domain performs an essential and upstream function in reticulated-region biogenesis, likely promoting extension of the tubules.
  • PMID:42427617
    MCP and TM domains are not required for cylindrical tubule elongation. Instead, they are required to convert elongated cylindrical tubules into reticulated-region tubules.
  • PMID:42427617
    We conclude that RBMP2 is required for normal CAH3 localization and for maintaining pyrenoid function under strongly CO2-limiting conditions.
  • PMID:33177094
    Our microscopy data suggest that RBMP2 is confined to the central reticulated region of the tubules

References

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Suggested Questions for Experts

Q: Does RBMP2 bend membranes directly? If purified RBMP2 (or its membrane-contact region and C-terminal transmembrane hairpin) tubulates liposomes, membrane bending activity (GO:0180020) would become the appropriate molecular function.

Suggested experts: Jonikas MC, Engel BD

Q: What does the non-catalytic rhodanese domain bind to drive tubule extension, given that the predicted partner LCI16 is not needed for the reticulated region?

Suggested experts: Jonikas MC

Q: Do the six Rubisco-binding motifs of RBMP2 contribute to the tubule-matrix interface redundantly with other RBM proteins (RBMP1/BST4, SAGA1, MITH1)? An rbmp1 rbmp2 double mutant, or Ξ”RBM RBMP2 in a bst4 background, would test the remaining tether hypothesis.

Suggested experts: Mackinder LCM, Jonikas MC

Q: What is the membrane topology of RBMP2? Is the rhodanese domain, which lies between the predicted transmembrane helices, on the lumenal or the stromal (matrix) side?

Suggested Experiments

Experiment: Reconstitute full-length RBMP2 and truncations (Ξ”MCP, Ξ”TM) into liposomes or supported bilayers and image tubulation by cryo-EM; test whether heterologous expression in Arabidopsis chloroplasts alters thylakoid morphology.

Hypothesis: RBMP2 deforms membranes through its membrane-contact region and C-terminal transmembrane hairpin.

Type: biochemistry / reconstitution

Experiment: Proximity labelling (TurboID) of full-length and Ξ”RHO RBMP2 in the pyrenoid, followed by mutant analysis of the candidates for tubule termination phenotypes.

Hypothesis: The RBMP2 rhodanese domain extends tubules by recruiting a partner protein.

Type: proteomics / genetics

Experiment: Protease-protection or split-GFP topology mapping of tagged RBMP2 in isolated thylakoids.

Hypothesis: RBMP2 topology places the rhodanese domain in the lumen.

Type: biochemistry

πŸ“š Additional Documentation

Notes

(RBMP2-notes.md)

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Bioinformatics Results

(RESULTS.md)

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