K9IWR0

UniProt ID: K9IWR0
Organism: Desmodus rotundus
Review Status: DRAFT
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Gene Description

K9IWR0 is the Desmodus rotundus (common vampire bat) lymphotoxin-alpha, a secreted tumour necrosis factor (TNF) superfamily cytokine. It carries the TNF homology domain and assembles into the family's characteristic beta-sandwich trimer, which engages the TNF receptors TNFRSF1A, TNFRSF1B and TNFRSF14 on target cells. Receptor engagement activates canonical NF-kappaB signalling and, in susceptible cells, the extrinsic apoptotic pathway, making the protein a soluble mediator of inflammatory and lymphoid signalling rather than an enzyme.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0007165 signal transduction
IEA
GO_REF:0000108
MARK AS OVER ANNOTATED
Summary: Signal transduction is a broad inference without direct evidence for this DESRO cytokine.
Reason: Annotation is generic and not directly supported in DESRO; core function is cytokine activity.
GO:0043123 positive regulation of canonical NF-kappaB signal transduction
IEA
GO_REF:0000118
ACCEPT
Summary: K9IWR0 is lymphotoxin-alpha (UniProt RecName; PANTHER PTHR11471:SF31 LYMPHOTOXIN-ALPHA), a secreted TNF-superfamily cytokine that signals through TNFRSF1A/TNFR1, TNFRSF1B and TNFRSF14. Canonical NF-kappaB activation is the principal downstream output of that receptor engagement, and the propagation comes from the lymphotoxin-alpha node (PANTHER:PTN000158030), not from a broad family-level node.
Reason: Relaxed from MARK_AS_OVER_ANNOTATED on re-review. The previous rejection rested only on the absence of a Desmodus-specific experiment, which is not evidence against a supported phylogenetic inference. The protein carries the complete TNF-domain architecture (Pfam PF00229; InterPro IPR002960 TNF_beta) and is assigned to the lymphotoxin-alpha subfamily, and the review already accepts its cytokine activity (GO:0005125) and TNF receptor binding (GO:0005164); positive regulation of canonical NF-kappaB signalling is the established consequence of that receptor binding rather than an additional unsupported claim.
Supporting Evidence:
file:DESRO/K9IWR0/K9IWR0-uniprot.txt
PANTHER; PTHR11471:SF31; LYMPHOTOXIN-ALPHA; 1.
file:DESRO/K9IWR0/K9IWR0-uniprot.txt
Pfam; PF00229; TNF; 1.
GO:2001238 positive regulation of extrinsic apoptotic signaling pathway
IEA
GO_REF:0000118
ACCEPT
Summary: Lymphotoxin-alpha engages TNFR1, a death-domain receptor, and UniProt records that lymphotoxin is cytotoxic for a wide range of tumour cells in vitro and in vivo - the extrinsic, receptor-initiated apoptotic route. The propagation is from the lymphotoxin-alpha node (PANTHER:PTN000158030).
Reason: Relaxed from MARK_AS_OVER_ANNOTATED on re-review. The earlier rejection cited only the lack of a Desmodus-specific assay. The target has the full TNF ligand architecture and subfamily assignment, and the cytotoxic, TNFR1-mediated activity of lymphotoxin-alpha is the basis of the term; positive regulation of the extrinsic apoptotic signalling pathway follows from the accepted TNF receptor binding rather than extending beyond it.
Supporting Evidence:
file:DESRO/K9IWR0/K9IWR0-uniprot.txt
cytotoxic for a wide range of tumor cells in vitro
GO:0005125 cytokine activity
IEA
GO_REF:0000120
ACCEPT
Summary: UniProt describes this protein as a cytokine that binds TNF receptors.
Reason: UniProt functional description supports cytokine activity.
Supporting Evidence:
file:DESRO/K9IWR0/K9IWR0-uniprot.txt
"Cytokine that in its homotrimeric form binds to TNFRSF1A/TNFR1"
GO:0005164 tumor necrosis factor receptor binding
IEA
GO_REF:0000120
ACCEPT
Summary: UniProt functional description indicates TNF receptor binding.
Reason: Functional description notes binding to TNF receptors.
Supporting Evidence:
file:DESRO/K9IWR0/K9IWR0-uniprot.txt
"Cytokine that in its homotrimeric form binds to TNFRSF1A/TNFR1"
GO:0005576 extracellular region
IEA
GO_REF:0000044
ACCEPT
Summary: A secreted cytokine; extracellular region is the appropriate location term.
Reason: UniProt indicates secretion; extracellular region is correct. GO has since obsoleted GO:0005615 extracellular space, the replacement previously proposed here, and merged it into GO:0005576 (replaced_by), so this term is now the correct location term.
Supporting Evidence:
file:DESRO/K9IWR0/K9IWR0-uniprot.txt
"SUBCELLULAR LOCATION: Secreted"
GO:0005615 extracellular space
IEA
GO_REF:0000120
ACCEPT
Summary: UniProt annotates this protein as secreted.
Reason: Secreted localization is supported in UniProt.
Supporting Evidence:
file:DESRO/K9IWR0/K9IWR0-uniprot.txt
"SUBCELLULAR LOCATION: Secreted"
GO:0006955 immune response
IEA
GO_REF:0000002
MARK AS OVER ANNOTATED
Summary: Immune response is a broad inference without direct evidence in DESRO.
Reason: General immune response annotation is inferred and not directly supported.
GO:0006959 humoral immune response
IEA
GO_REF:0000104
MARK AS OVER ANNOTATED
Summary: Humoral immune response is a specific process inferred from orthology without direct DESRO evidence.
Reason: Specific humoral response evidence is lacking for this DESRO protein.
GO:0016020 membrane
IEA
GO_REF:0000120
ACCEPT
Summary: UniProt indicates membrane localization in addition to secretion.
Reason: Subcellular location includes membrane.
Supporting Evidence:
file:DESRO/K9IWR0/K9IWR0-uniprot.txt
"Membrane"

Core Functions

Secreted TNF-superfamily cytokine that binds TNF receptors and thereby drives canonical NF-kappaB activation and extrinsic apoptotic signalling in target cells.

Supporting Evidence:
  • file:DESRO/K9IWR0/K9IWR0-uniprot.txt
    PANTHER; PTHR11471:SF31; LYMPHOTOXIN-ALPHA; 1.
  • file:DESRO/K9IWR0/K9IWR0-uniprot.txt
    InterPro; IPR002960; TNF_beta.

References

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Deep Research

Falcon

(K9IWR0-deep-research-falcon.md)

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πŸ“š Additional Documentation

Notes

(K9IWR0-notes.md)

K9IWR0 Research Notes

Key findings

  • UniProt names this protein lymphotoxin-alpha [file:DESRO/K9IWR0/K9IWR0-uniprot.txt "RecName: Full=Lymphotoxin-alpha"].
  • UniProt indicates the protein is secreted [file:DESRO/K9IWR0/K9IWR0-uniprot.txt "SUBCELLULAR LOCATION: Secreted"].
  • Deep research confirms the identity as lymphotoxin-alpha [file:DESRO/K9IWR0/K9IWR0-deep-research-falcon.md "K9IWR0 is a UniProt accession for lymphotoxin-alpha"]
  • UniProt places this protein in the tumor necrosis factor family [file:DESRO/K9IWR0/K9IWR0-uniprot.txt "Belongs to the tumor necrosis factor family."].

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