K9IWR0 is the Desmodus rotundus (common vampire bat) lymphotoxin-alpha, a secreted tumour necrosis factor (TNF) superfamily cytokine. It carries the TNF homology domain and assembles into the family's characteristic beta-sandwich trimer, which engages the TNF receptors TNFRSF1A, TNFRSF1B and TNFRSF14 on target cells. Receptor engagement activates canonical NF-kappaB signalling and, in susceptible cells, the extrinsic apoptotic pathway, making the protein a soluble mediator of inflammatory and lymphoid signalling rather than an enzyme.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
| GO:0007165 signal transduction | IEA GO_REF:0000108 | MARK AS OVER ANNOTATED | Summary: Signal transduction is a broad inference without direct evidence for this DESRO cytokine. Reason: Annotation is generic and not directly supported in DESRO; core function is cytokine activity. |
| GO:0043123 positive regulation of canonical NF-kappaB signal transduction | IEA GO_REF:0000118 | ACCEPT | Summary: K9IWR0 is lymphotoxin-alpha (UniProt RecName; PANTHER PTHR11471:SF31 LYMPHOTOXIN-ALPHA), a secreted TNF-superfamily cytokine that signals through TNFRSF1A/TNFR1, TNFRSF1B and TNFRSF14. Canonical NF-kappaB activation is the principal downstream output of that receptor engagement, and the propagation comes from the lymphotoxin-alpha node (PANTHER:PTN000158030), not from a broad family-level node. Reason: Relaxed from MARK_AS_OVER_ANNOTATED on re-review. The previous rejection rested only on the absence of a Desmodus-specific experiment, which is not evidence against a supported phylogenetic inference. The protein carries the complete TNF-domain architecture (Pfam PF00229; InterPro IPR002960 TNF_beta) and is assigned to the lymphotoxin-alpha subfamily, and the review already accepts its cytokine activity (GO:0005125) and TNF receptor binding (GO:0005164); positive regulation of canonical NF-kappaB signalling is the established consequence of that receptor binding rather than an additional unsupported claim. Supporting Evidence: file:DESRO/K9IWR0/K9IWR0-uniprot.txt PANTHER; PTHR11471:SF31; LYMPHOTOXIN-ALPHA; 1. file:DESRO/K9IWR0/K9IWR0-uniprot.txt Pfam; PF00229; TNF; 1. |
| GO:2001238 positive regulation of extrinsic apoptotic signaling pathway | IEA GO_REF:0000118 | ACCEPT | Summary: Lymphotoxin-alpha engages TNFR1, a death-domain receptor, and UniProt records that lymphotoxin is cytotoxic for a wide range of tumour cells in vitro and in vivo - the extrinsic, receptor-initiated apoptotic route. The propagation is from the lymphotoxin-alpha node (PANTHER:PTN000158030). Reason: Relaxed from MARK_AS_OVER_ANNOTATED on re-review. The earlier rejection cited only the lack of a Desmodus-specific assay. The target has the full TNF ligand architecture and subfamily assignment, and the cytotoxic, TNFR1-mediated activity of lymphotoxin-alpha is the basis of the term; positive regulation of the extrinsic apoptotic signalling pathway follows from the accepted TNF receptor binding rather than extending beyond it. Supporting Evidence: file:DESRO/K9IWR0/K9IWR0-uniprot.txt cytotoxic for a wide range of tumor cells in vitro |
| GO:0005125 cytokine activity | IEA GO_REF:0000120 | ACCEPT | Summary: UniProt describes this protein as a cytokine that binds TNF receptors. Reason: UniProt functional description supports cytokine activity. Supporting Evidence: file:DESRO/K9IWR0/K9IWR0-uniprot.txt "Cytokine that in its homotrimeric form binds to TNFRSF1A/TNFR1" |
| GO:0005164 tumor necrosis factor receptor binding | IEA GO_REF:0000120 | ACCEPT | Summary: UniProt functional description indicates TNF receptor binding. Reason: Functional description notes binding to TNF receptors. Supporting Evidence: file:DESRO/K9IWR0/K9IWR0-uniprot.txt "Cytokine that in its homotrimeric form binds to TNFRSF1A/TNFR1" |
| GO:0005576 extracellular region | IEA GO_REF:0000044 | ACCEPT | Summary: A secreted cytokine; extracellular region is the appropriate location term. Reason: UniProt indicates secretion; extracellular region is correct. GO has since obsoleted GO:0005615 extracellular space, the replacement previously proposed here, and merged it into GO:0005576 (replaced_by), so this term is now the correct location term. Supporting Evidence: file:DESRO/K9IWR0/K9IWR0-uniprot.txt "SUBCELLULAR LOCATION: Secreted" |
| GO:0005615 extracellular space | IEA GO_REF:0000120 | ACCEPT | Summary: UniProt annotates this protein as secreted. Reason: Secreted localization is supported in UniProt. Supporting Evidence: file:DESRO/K9IWR0/K9IWR0-uniprot.txt "SUBCELLULAR LOCATION: Secreted" |
| GO:0006955 immune response | IEA GO_REF:0000002 | MARK AS OVER ANNOTATED | Summary: Immune response is a broad inference without direct evidence in DESRO. Reason: General immune response annotation is inferred and not directly supported. |
| GO:0006959 humoral immune response | IEA GO_REF:0000104 | MARK AS OVER ANNOTATED | Summary: Humoral immune response is a specific process inferred from orthology without direct DESRO evidence. Reason: Specific humoral response evidence is lacking for this DESRO protein. |
| GO:0016020 membrane | IEA GO_REF:0000120 | ACCEPT | Summary: UniProt indicates membrane localization in addition to secretion. Reason: Subcellular location includes membrane. Supporting Evidence: file:DESRO/K9IWR0/K9IWR0-uniprot.txt "Membrane" |
Loading supporting contentβ¦
Download this section (compressed HTML)Loading supporting contentβ¦
Download this section (compressed HTML)Loading supporting contentβ¦
Download this section (compressed HTML)