Cyclic AMP receptor 3 (cAR3, carC) is one of four serpentine seven-transmembrane G protein-coupled cAMP receptors of the social amoeba Dictyostelium discoideum. It is an intermediate-affinity receptor for extracellular cAMP that is induced at early aggregation and reaches maximal expression during the multicellular mound and slug stages. Like its close paralog cAR1 (carA), cAR3 couples through heterotrimeric G proteins (notably Galpha2) to intracellular effectors, triggering activation of adenylyl cyclase (cAMP relay), guanylyl cyclase, actin polymerization and small-GTPase (Rap1) signaling. Through these outputs it mediates chemotaxis toward cAMP and the aggregation of individual cells into a multicellular organism, and it contributes to the developmentally regulated gene-expression program. cAR1 and cAR3 are partially redundant, and cells lacking both receptors are unresponsive to cAMP, whereas single mutants retain substantial signaling. The receptor is a plasma-membrane glycoprotein whose C-terminal cytoplasmic tail can be phosphorylated.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0004930
G protein-coupled receptor activity
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: cAR3 is a bona fide serpentine (7TM) G protein-coupled receptor of the Dictyostelium cAR family that signals through heterotrimeric G proteins. The phylogenetic inference is correct and consistent with direct experimental evidence.
Reason: cAR3 belongs to the cAMP receptor GPCR family and couples to heterotrimeric G proteins, as shown directly by the loss of cAMP responses in car1-/car3- cells and their dependence on Galpha2. The more specific MF is cAMP receptor activity (GO:0001646), but the general GPCR activity term is also correct.
Supporting Evidence:
PMID:7949426
both interact with the same heterotrimeric G-protein to mediate these and other responses
|
|
GO:0005886
plasma membrane
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: cAR3 is a multi-pass plasma-membrane receptor that senses extracellular cAMP at the cell surface. Plasma-membrane localization is correct and is the site where the receptor is active.
Reason: As a cell-surface cAMP receptor with seven transmembrane helices, cAR3 is an integral plasma-membrane protein, consistent with its role in detecting the extracellular chemoattractant.
Supporting Evidence:
PMID:2722797
four forms of the cell surface receptor
|
|
GO:0007189
adenylate cyclase-activating G protein-coupled receptor signaling pathway
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: cAR3 activation leads to stimulation of adenylyl cyclase (cAMP relay) via heterotrimeric G proteins, so participation in an adenylate cyclase-activating GPCR signaling pathway is correct. A cAMP-ligand specific child term (GO:0140582) is also annotated and is more precise.
Reason: Both cAR1 and cAR3 mediate cAMP relay (adenylyl cyclase activation), which is lost in car1-/car3- cells. The pathway annotation is well supported, though the cAMP-specific term GO:0140582 captures the ligand.
Supporting Evidence:
PMID:9578623
activation of adenylyl cyclase
|
|
GO:0004888
transmembrane signaling receptor activity
|
IEA
GO_REF:0000002 |
KEEP AS NON CORE |
Summary: This InterPro2GO annotation is a correct but general parent of the more informative cAMP receptor activity and GPCR activity terms already annotated to cAR3.
Reason: The term is technically correct (cAR3 is a transmembrane signaling receptor) but is subsumed by the more specific cAMP receptor activity (GO:0001646) and GPCR activity (GO:0004930) annotations, so it is not the core function.
Supporting Evidence:
PMID:2722797
four forms of the cell surface receptor
|
|
GO:0004930
G protein-coupled receptor activity
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: InterPro2GO assignment of GPCR activity from the cAMP receptor domain (IPR000848). Correct and concordant with the IBA and experimental evidence.
Reason: cAR3 is a member of the Dictyostelium cAMP GPCR family; the domain-based assignment of GPCR activity is accurate.
Supporting Evidence:
PMID:7949426
both interact with the same heterotrimeric G-protein to mediate these and other responses
|
|
GO:0007165
signal transduction
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: A very general biological-process term. cAR3 is a signaling receptor, so this is correct but uninformative relative to the specific GPCR/cAMP signaling pathway terms already present.
Reason: Correct at a high level but far too general to represent the core biology; the specific pathway terms (GO:0140582, GO:0007189) are the informative annotations.
Supporting Evidence:
PMID:9578623
activate common responses at different agonist
|
|
GO:0007166
cell surface receptor signaling pathway
|
IEA
GO_REF:0000002 |
KEEP AS NON CORE |
Summary: Correct general parent term; cAR3 is a cell-surface receptor that transduces an extracellular signal. Subsumed by the more specific GPCR signaling pathway annotations.
Reason: Accurate but general; the specific adenylate cyclase-activating GPCR cAMP receptor signaling pathway is the informative term.
Supporting Evidence:
PMID:2722797
four forms of the cell surface receptor
|
|
GO:0007186
G protein-coupled receptor signaling pathway
|
IEA
GO_REF:0000002 |
KEEP AS NON CORE |
Summary: cAR3 signals as a GPCR through heterotrimeric G proteins, so this pathway term is correct. It is a general parent of the cAMP-specific and adenylate cyclase-activating child terms already annotated.
Reason: Correct but general; the more specific cAMP receptor signaling pathway terms better capture the core function.
Supporting Evidence:
PMID:7949426
both interact with the same heterotrimeric G-protein to mediate these and other responses
|
|
GO:0016020
membrane
|
IEA
GO_REF:0000120 |
KEEP AS NON CORE |
Summary: General membrane localization inferred from the multi-pass membrane domain. Correct but subsumed by the more specific plasma membrane annotation.
Reason: cAR3 is an integral membrane protein, but plasma membrane (GO:0005886) is the specific, informative location.
Supporting Evidence:
PMID:2722797
four forms of the cell surface receptor
|
|
GO:0030552
cAMP binding
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: Domain-based (InterPro) inference of cAMP binding, concordant with direct radioligand binding measurements for cAR3. This is a core molecular activity of the receptor.
Reason: cAR3 directly binds cAMP, as shown by [3H]cAMP binding studies that measured its affinity states; the InterPro assignment agrees with the experimental data.
Supporting Evidence:
PMID:1537842
20 and 500 nM for cAR3
|
|
GO:0035589
G protein-coupled purinergic nucleotide receptor signaling pathway
|
IEA
GO_REF:0000108 |
REMOVE |
Summary: This term was assigned by automated inter-ontology logical inference from cAMP receptor activity. Although cAMP is chemically a purine nucleotide, purinergic nucleotide receptor signaling denotes the P1/P2-type receptor systems responding to extracellular ATP/ADP/adenosine. Dictyostelium cAMP chemoattractant signaling is not purinergic signaling in that sense.
Reason: The annotation is a mechanical over-propagation from the inter-ontology mapping of cAMP receptor activity to a purinergic pathway. cAR3 is a cAMP chemoattractant receptor, not a purinergic (ATP/adenosine) receptor, so this pathway term mischaracterizes its biology.
Supporting Evidence:
PMID:7949426
both interact with the same heterotrimeric G-protein to mediate these and other responses
|
|
GO:1904776
regulation of protein localization to cell cortex
|
IGI
PMID:40934557 The Ras association domain of DydA as a specific reporter of... |
KEEP AS NON CORE |
Summary: Cortical translocation of the RasG biosensor GFP-RA1:DydA during chemotaxis required cAR1/cAR3 and G-protein signaling, placing cAR3 upstream of protein localization to the cell cortex. This is a valid but downstream regulatory role rather than a core molecular function.
Reason: The IGI experiment shows cAR1/cAR3 are required for cortical and leading-edge recruitment of a downstream Ras effector reporter. cAR3 acts upstream of this localization through chemoattractant signaling; it is a genuine but non-core, context-specific role.
Supporting Evidence:
PMID:40934557
This localization required GPCR Car1/3 and G-protein signaling
|
|
GO:0005096
GTPase activator activity
|
IDA
PMID:21103944 Chemoattractant-mediated Rap1 activation requires GPCR/G pro... |
MARK AS OVER ANNOTATED |
Summary: This paper shows that rapid Rap1 activation upon cAMP stimulation is absent in cells lacking cAR1/cAR3 or Galpha2, placing the receptor upstream of Rap1 GTPase activation. However, GTPase activator activity (GO:0005096, GAP activity) is a molecular function the receptor does not itself possess, because cAR3 is an upstream GPCR and Rap1 activation (GTP loading) is mediated by downstream exchange factors, not by a GAP.
Reason: The receptor is required for chemoattractant-induced Rap1 activation but does not have intrinsic GTPase activator (GAP) activity; the effect is indirect, transduced through G proteins and downstream regulators. The molecular-function assignment over-attributes an effector activity to the upstream receptor. Its role is better captured as involvement in the GPCR signaling pathway.
Supporting Evidence:
PMID:21103944
The rapid Rap1 activation upon cAMP chemoattractant stimulation was absent in cells lacking chemoattractant cAMP receptors cAR1/cAR3 or a subunit of the heterotrimeric G-protein complex Gα2
|
|
GO:0006935
chemotaxis
|
IGI
PMID:9578623 Switching of chemoattractant receptors programs development ... |
ACCEPT |
Summary: cAR3, redundantly with cAR1, mediates chemotaxis toward cAMP; constitutively expressed cAR3 confers chemotactic responses and rescues the car1-/car3- defect. This is a core biological process for the receptor.
Reason: Directly assessed capacity of cAR3 to mediate chemotaxis, with genetic interaction to cAR1 (car1-/car3- double mutant). Chemotaxis toward cAMP is a central output of cAR3 signaling.
Supporting Evidence:
PMID:9578623
assessed the capacity of each to mediate chemotaxis
|
|
GO:0010856
adenylate cyclase activator activity
|
IMP
PMID:9578623 Switching of chemoattractant receptors programs development ... |
MARK AS OVER ANNOTATED |
Summary: cAR3 mediates activation of adenylyl cyclase (cAMP relay), lost in car1-/car3- cells. However, as a GPCR it activates adenylyl cyclase indirectly through heterotrimeric G proteins rather than binding and activating the cyclase directly, so adenylate cyclase activator activity as a molecular function of the receptor over-attributes an effector activity.
Reason: The receptor's requirement for adenylyl cyclase activation is real, but the activation is G-protein-mediated and indirect. The role is better captured by the pathway term adenylate cyclase-activating GPCR cAMP receptor signaling pathway (GO:0140582 and GO:0007189) than by a direct cyclase-activator molecular function assigned to the receptor.
Supporting Evidence:
PMID:9578623
activation of adenylyl cyclase
|
|
GO:0031152
aggregation involved in sorocarp development
|
IGI
PMID:9578623 Switching of chemoattractant receptors programs development ... |
ACCEPT |
Summary: cAR3, together with cAR1, drives the aggregation of individual amoebae into a multicellular organism; constitutively expressed receptors mediate aggregation-stage responses and rescue the car1-/car3- developmental defect. This is a core developmental role.
Reason: The receptors mediate identical responses during the aggregation stage and rescue the developmental defect of car1-/car3- cells, directly linking cAR3 to aggregation in the developmental (sorocarp) program.
Supporting Evidence:
PMID:9578623
rescue the developmental defect of car1-/car3- cells
PMID:9578623
mediate identical responses during the aggregation stage of development
|
|
GO:0140582
adenylate cyclase-activating G protein-coupled cAMP receptor signaling pathway
|
IGI
PMID:7949426 Two cAMP receptors activate common signaling pathways in Dic... |
ACCEPT |
Summary: cAR1 and cAR3 activate common signaling pathways, including cAMP relay (adenylyl cyclase activation), by coupling to the same heterotrimeric G protein. This cAMP-ligand-specific, adenylate cyclase-activating pathway term is the most precise process annotation for cAR3.
Reason: Genetic evidence (car1- and car1-/car3- phenotypes) shows cAR3 mediates cAMP relay through a shared G protein, precisely matching this pathway term.
Supporting Evidence:
PMID:7949426
We conclude that the functions of the cAR1 and cAR3 receptors are partially redundant and that both interact with the same heterotrimeric G-protein to mediate these and other responses
|
|
GO:0005886
plasma membrane
|
TAS
PMID:15473840 Chemoattractant signaling in dictyostelium discoideum. |
ACCEPT |
Summary: Plasma-membrane localization asserted in an authoritative review of chemoattractant signaling, consistent with cAR3 being a cell-surface 7TM receptor.
Reason: cAR3 is a cell-surface cAMP receptor located in the plasma membrane, the site of chemoattractant detection.
Supporting Evidence:
PMID:2722797
four forms of the cell surface receptor
|
|
GO:0030552
cAMP binding
|
IDA
PMID:2722797 The cyclic nucleotide specificity of eight cAMP-binding prot... |
ACCEPT |
Summary: Direct ligand-specificity analysis of the Dictyostelium cell-surface cAMP receptors (including cAR3) demonstrating cAMP binding. cAMP binding is a core molecular activity of the receptor.
Reason: cAR3 is one of the four cell-surface cAMP receptors whose cyclic nucleotide binding specificity was directly characterized; cAMP binding is intrinsic to its receptor function.
Supporting Evidence:
PMID:2722797
four forms of the cell surface receptor
|
|
GO:0030552
cAMP binding
|
IDA
PMID:1537842 The cyclic nucleotide specificity of three cAMP receptors in... |
ACCEPT |
Summary: Direct [3H]cAMP binding assays established cAR3 affinity states (approximately 20 and 500 nM), confirming intermediate-affinity cAMP binding. Core molecular activity.
Reason: Radioligand binding measurements directly demonstrate cAMP binding by cAR3 with defined affinity states, a central feature of the receptor.
Supporting Evidence:
PMID:1537842
20 and 500 nM for cAR3
|
|
GO:0005515
protein binding
|
IPI
PMID:16781008 The COP9 signalosome regulates cell proliferation of Dictyos... |
KEEP AS NON CORE |
Summary: A yeast two-hybrid screen identified the COP9 signalosome subunit CSN5 as a potential interacting partner of a Dictyostelium cell-surface receptor. This bare protein binding term is uninformative about molecular function and the interaction is described as potential.
Reason: Per curation guidance, bare protein binding is not retained as a core function. The reported CSN5 interaction is a specific but preliminary (yeast two-hybrid, potential) finding whose functional significance for cAR3 is unestablished; it is kept as non-core rather than treated as a core molecular function.
Supporting Evidence:
PMID:16781008
we have identified the CSN5 subunit as a potential interacting partner of a cell surface receptor of Dictyostelium
|
|
GO:0001646
cAMP receptor activity
|
IDA
PMID:9578623 Switching of chemoattractant receptors programs development ... |
ACCEPT |
Summary: Direct evidence that cAR3 functions as a cAMP receptor, since constitutive expression confers cAMP-sensing responses. This is the defining core molecular function of the gene product.
Reason: cAR3 directly binds cAMP and transduces the signal as a receptor, as demonstrated by reconstitution of cAMP responses upon its expression. This is the core molecular function.
Supporting Evidence:
PMID:9578623
assessed the capacity of each to mediate chemotaxis
|
|
GO:0001646
cAMP receptor activity
|
IGI
PMID:9578623 Switching of chemoattractant receptors programs development ... |
ACCEPT |
Summary: Genetic-interaction evidence (with cAR1) supporting cAR3 cAMP receptor activity; the two receptors are partially redundant in cAMP sensing. Core molecular function.
Reason: The car1-/car3- double mutant loses cAMP responsiveness while single mutants retain it, genetically confirming cAR3 acts as a cAMP receptor redundantly with cAR1.
Supporting Evidence:
PMID:9578623
rescue the developmental defect of car1-/car3- cells
|
|
GO:0030552
cAMP binding
|
IMP
PMID:9578623 Switching of chemoattractant receptors programs development ... |
ACCEPT |
Summary: Mutational/expression analysis supporting cAMP binding by cAR3 as part of its receptor function. Core molecular activity, concordant with the direct binding studies.
Reason: cAMP binding is intrinsic to cAR3 receptor activity and is supported across binding assays and functional expression studies.
Supporting Evidence:
PMID:1537842
20 and 500 nM for cAR3
|
id: P35352
gene_symbol: carC
product_type: PROTEIN
status: COMPLETE
taxon:
id: NCBITaxon:44689
label: Dictyostelium discoideum
description: Cyclic AMP receptor 3 (cAR3, carC) is one of four serpentine
seven-transmembrane G protein-coupled cAMP receptors of the social amoeba
Dictyostelium discoideum. It is an intermediate-affinity receptor for
extracellular cAMP that is induced at early aggregation and reaches maximal
expression during the multicellular mound and slug stages. Like its close
paralog cAR1 (carA), cAR3 couples through heterotrimeric G proteins (notably
Galpha2) to intracellular effectors, triggering activation of adenylyl cyclase
(cAMP relay), guanylyl cyclase, actin polymerization and small-GTPase (Rap1)
signaling. Through these outputs it mediates chemotaxis toward cAMP and the
aggregation of individual cells into a multicellular organism, and it
contributes to the developmentally regulated gene-expression program. cAR1 and
cAR3 are partially redundant, and cells lacking both receptors are unresponsive
to cAMP, whereas single mutants retain substantial signaling. The receptor is a
plasma-membrane glycoprotein whose C-terminal cytoplasmic tail can be
phosphorylated.
existing_annotations:
- term:
id: GO:0004930
label: G protein-coupled receptor activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
summary: cAR3 is a bona fide serpentine (7TM) G protein-coupled receptor of
the Dictyostelium cAR family that signals through heterotrimeric G
proteins. The phylogenetic inference is correct and consistent with direct
experimental evidence.
action: ACCEPT
reason: cAR3 belongs to the cAMP receptor GPCR family and couples to
heterotrimeric G proteins, as shown directly by the loss of cAMP responses
in car1-/car3- cells and their dependence on Galpha2. The more specific MF
is cAMP receptor activity (GO:0001646), but the general GPCR activity term
is also correct.
supported_by:
- reference_id: PMID:7949426
supporting_text: both interact with the same heterotrimeric G-protein to
mediate these and other responses
- term:
id: GO:0005886
label: plasma membrane
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: cAR3 is a multi-pass plasma-membrane receptor that senses
extracellular cAMP at the cell surface. Plasma-membrane localization is
correct and is the site where the receptor is active.
action: ACCEPT
reason: As a cell-surface cAMP receptor with seven transmembrane helices,
cAR3 is an integral plasma-membrane protein, consistent with its role in
detecting the extracellular chemoattractant.
supported_by:
- reference_id: PMID:2722797
supporting_text: four forms of the cell surface receptor
- term:
id: GO:0007189
label: adenylate cyclase-activating G protein-coupled receptor signaling pathway
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: cAR3 activation leads to stimulation of adenylyl cyclase (cAMP
relay) via heterotrimeric G proteins, so participation in an adenylate
cyclase-activating GPCR signaling pathway is correct. A cAMP-ligand
specific child term (GO:0140582) is also annotated and is more precise.
action: ACCEPT
reason: Both cAR1 and cAR3 mediate cAMP relay (adenylyl cyclase activation),
which is lost in car1-/car3- cells. The pathway annotation is well
supported, though the cAMP-specific term GO:0140582 captures the ligand.
supported_by:
- reference_id: PMID:9578623
supporting_text: activation of adenylyl cyclase
- term:
id: GO:0004888
label: transmembrane signaling receptor activity
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: enables
review:
summary: This InterPro2GO annotation is a correct but general parent of the
more informative cAMP receptor activity and GPCR activity terms already
annotated to cAR3.
action: KEEP_AS_NON_CORE
reason: The term is technically correct (cAR3 is a transmembrane signaling
receptor) but is subsumed by the more specific cAMP receptor activity
(GO:0001646) and GPCR activity (GO:0004930) annotations, so it is not the
core function.
supported_by:
- reference_id: PMID:2722797
supporting_text: four forms of the cell surface receptor
- term:
id: GO:0004930
label: G protein-coupled receptor activity
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: enables
review:
summary: InterPro2GO assignment of GPCR activity from the cAMP receptor
domain (IPR000848). Correct and concordant with the IBA and experimental
evidence.
action: ACCEPT
reason: cAR3 is a member of the Dictyostelium cAMP GPCR family; the
domain-based assignment of GPCR activity is accurate.
supported_by:
- reference_id: PMID:7949426
supporting_text: both interact with the same heterotrimeric G-protein to
mediate these and other responses
- term:
id: GO:0007165
label: signal transduction
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: A very general biological-process term. cAR3 is a signaling
receptor, so this is correct but uninformative relative to the specific
GPCR/cAMP signaling pathway terms already present.
action: KEEP_AS_NON_CORE
reason: Correct at a high level but far too general to represent the core
biology; the specific pathway terms (GO:0140582, GO:0007189) are the
informative annotations.
supported_by:
- reference_id: PMID:9578623
supporting_text: activate common responses at different agonist
- term:
id: GO:0007166
label: cell surface receptor signaling pathway
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: involved_in
review:
summary: Correct general parent term; cAR3 is a cell-surface receptor that
transduces an extracellular signal. Subsumed by the more specific GPCR
signaling pathway annotations.
action: KEEP_AS_NON_CORE
reason: Accurate but general; the specific adenylate cyclase-activating GPCR
cAMP receptor signaling pathway is the informative term.
supported_by:
- reference_id: PMID:2722797
supporting_text: four forms of the cell surface receptor
- term:
id: GO:0007186
label: G protein-coupled receptor signaling pathway
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: involved_in
review:
summary: cAR3 signals as a GPCR through heterotrimeric G proteins, so this
pathway term is correct. It is a general parent of the cAMP-specific and
adenylate cyclase-activating child terms already annotated.
action: KEEP_AS_NON_CORE
reason: Correct but general; the more specific cAMP receptor signaling
pathway terms better capture the core function.
supported_by:
- reference_id: PMID:7949426
supporting_text: both interact with the same heterotrimeric G-protein to
mediate these and other responses
- term:
id: GO:0016020
label: membrane
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: located_in
review:
summary: General membrane localization inferred from the multi-pass
membrane domain. Correct but subsumed by the more specific plasma membrane
annotation.
action: KEEP_AS_NON_CORE
reason: cAR3 is an integral membrane protein, but plasma membrane
(GO:0005886) is the specific, informative location.
supported_by:
- reference_id: PMID:2722797
supporting_text: four forms of the cell surface receptor
- term:
id: GO:0030552
label: cAMP binding
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: enables
review:
summary: Domain-based (InterPro) inference of cAMP binding, concordant with
direct radioligand binding measurements for cAR3. This is a core molecular
activity of the receptor.
action: ACCEPT
reason: cAR3 directly binds cAMP, as shown by [3H]cAMP binding studies that
measured its affinity states; the InterPro assignment agrees with the
experimental data.
supported_by:
- reference_id: PMID:1537842
supporting_text: 20 and 500 nM for cAR3
- term:
id: GO:0035589
label: G protein-coupled purinergic nucleotide receptor signaling pathway
evidence_type: IEA
original_reference_id: GO_REF:0000108
qualifier: involved_in
review:
summary: This term was assigned by automated inter-ontology logical
inference from cAMP receptor activity. Although cAMP is chemically a purine
nucleotide, purinergic nucleotide receptor signaling denotes the
P1/P2-type receptor systems responding to extracellular ATP/ADP/adenosine.
Dictyostelium cAMP chemoattractant signaling is not purinergic signaling in
that sense.
action: REMOVE
reason: The annotation is a mechanical over-propagation from the
inter-ontology mapping of cAMP receptor activity to a purinergic pathway.
cAR3 is a cAMP chemoattractant receptor, not a purinergic (ATP/adenosine)
receptor, so this pathway term mischaracterizes its biology.
supported_by:
- reference_id: PMID:7949426
supporting_text: both interact with the same heterotrimeric G-protein to
mediate these and other responses
- term:
id: GO:1904776
label: regulation of protein localization to cell cortex
evidence_type: IGI
original_reference_id: PMID:40934557
qualifier: acts_upstream_of_or_within
review:
summary: Cortical translocation of the RasG biosensor GFP-RA1:DydA during
chemotaxis required cAR1/cAR3 and G-protein signaling, placing cAR3
upstream of protein localization to the cell cortex. This is a valid but
downstream regulatory role rather than a core molecular function.
action: KEEP_AS_NON_CORE
reason: The IGI experiment shows cAR1/cAR3 are required for cortical and
leading-edge recruitment of a downstream Ras effector reporter. cAR3 acts
upstream of this localization through chemoattractant signaling; it is a
genuine but non-core, context-specific role.
supported_by:
- reference_id: PMID:40934557
supporting_text: This localization required GPCR Car1/3 and G-protein
signaling
- term:
id: GO:0005096
label: GTPase activator activity
evidence_type: IDA
original_reference_id: PMID:21103944
qualifier: enables
review:
summary: This paper shows that rapid Rap1 activation upon cAMP stimulation is
absent in cells lacking cAR1/cAR3 or Galpha2, placing the receptor upstream
of Rap1 GTPase activation. However, GTPase activator activity (GO:0005096,
GAP activity) is a molecular function the receptor does not itself possess,
because cAR3 is an upstream GPCR and Rap1 activation (GTP loading) is
mediated by downstream exchange factors, not by a GAP.
action: MARK_AS_OVER_ANNOTATED
reason: The receptor is required for chemoattractant-induced Rap1 activation
but does not have intrinsic GTPase activator (GAP) activity; the effect is
indirect, transduced through G proteins and downstream regulators. The
molecular-function assignment over-attributes an effector activity to the
upstream receptor. Its role is better captured as involvement in the GPCR
signaling pathway.
supported_by:
- reference_id: PMID:21103944
supporting_text: The rapid Rap1 activation upon cAMP chemoattractant
stimulation was absent in cells lacking chemoattractant cAMP receptors
cAR1/cAR3 or a subunit of the heterotrimeric G-protein complex Gα2
- term:
id: GO:0006935
label: chemotaxis
evidence_type: IGI
original_reference_id: PMID:9578623
qualifier: involved_in
review:
summary: cAR3, redundantly with cAR1, mediates chemotaxis toward cAMP;
constitutively expressed cAR3 confers chemotactic responses and rescues the
car1-/car3- defect. This is a core biological process for the receptor.
action: ACCEPT
reason: Directly assessed capacity of cAR3 to mediate chemotaxis, with
genetic interaction to cAR1 (car1-/car3- double mutant). Chemotaxis toward
cAMP is a central output of cAR3 signaling.
supported_by:
- reference_id: PMID:9578623
supporting_text: assessed the capacity of each to mediate chemotaxis
- term:
id: GO:0010856
label: adenylate cyclase activator activity
evidence_type: IMP
original_reference_id: PMID:9578623
qualifier: enables
review:
summary: cAR3 mediates activation of adenylyl cyclase (cAMP relay), lost in
car1-/car3- cells. However, as a GPCR it activates adenylyl cyclase
indirectly through heterotrimeric G proteins rather than binding and
activating the cyclase directly, so adenylate cyclase activator activity as
a molecular function of the receptor over-attributes an effector activity.
action: MARK_AS_OVER_ANNOTATED
reason: The receptor's requirement for adenylyl cyclase activation is real,
but the activation is G-protein-mediated and indirect. The role is better
captured by the pathway term adenylate cyclase-activating GPCR cAMP
receptor signaling pathway (GO:0140582 and GO:0007189) than by a direct
cyclase-activator molecular function assigned to the receptor.
supported_by:
- reference_id: PMID:9578623
supporting_text: activation of adenylyl cyclase
- term:
id: GO:0031152
label: aggregation involved in sorocarp development
evidence_type: IGI
original_reference_id: PMID:9578623
qualifier: involved_in
review:
summary: cAR3, together with cAR1, drives the aggregation of individual
amoebae into a multicellular organism; constitutively expressed receptors
mediate aggregation-stage responses and rescue the car1-/car3-
developmental defect. This is a core developmental role.
action: ACCEPT
reason: The receptors mediate identical responses during the aggregation
stage and rescue the developmental defect of car1-/car3- cells, directly
linking cAR3 to aggregation in the developmental (sorocarp) program.
supported_by:
- reference_id: PMID:9578623
supporting_text: rescue the developmental defect of car1-/car3- cells
- reference_id: PMID:9578623
supporting_text: mediate identical responses during the aggregation stage
of development
- term:
id: GO:0140582
label: adenylate cyclase-activating G protein-coupled cAMP receptor signaling
pathway
evidence_type: IGI
original_reference_id: PMID:7949426
qualifier: involved_in
review:
summary: cAR1 and cAR3 activate common signaling pathways, including cAMP
relay (adenylyl cyclase activation), by coupling to the same heterotrimeric
G protein. This cAMP-ligand-specific, adenylate cyclase-activating pathway
term is the most precise process annotation for cAR3.
action: ACCEPT
reason: Genetic evidence (car1- and car1-/car3- phenotypes) shows cAR3
mediates cAMP relay through a shared G protein, precisely matching this
pathway term.
supported_by:
- reference_id: PMID:7949426
supporting_text: We conclude that the functions of the cAR1 and cAR3
receptors are partially redundant and that both interact with the same
heterotrimeric G-protein to mediate these and other responses
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: PMID:15473840
qualifier: located_in
review:
summary: Plasma-membrane localization asserted in an authoritative review of
chemoattractant signaling, consistent with cAR3 being a cell-surface 7TM
receptor.
action: ACCEPT
reason: cAR3 is a cell-surface cAMP receptor located in the plasma membrane,
the site of chemoattractant detection.
supported_by:
- reference_id: PMID:2722797
supporting_text: four forms of the cell surface receptor
- term:
id: GO:0030552
label: cAMP binding
evidence_type: IDA
original_reference_id: PMID:2722797
qualifier: enables
review:
summary: Direct ligand-specificity analysis of the Dictyostelium cell-surface
cAMP receptors (including cAR3) demonstrating cAMP binding. cAMP binding is
a core molecular activity of the receptor.
action: ACCEPT
reason: cAR3 is one of the four cell-surface cAMP receptors whose cyclic
nucleotide binding specificity was directly characterized; cAMP binding is
intrinsic to its receptor function.
supported_by:
- reference_id: PMID:2722797
supporting_text: four forms of the cell surface receptor
- term:
id: GO:0030552
label: cAMP binding
evidence_type: IDA
original_reference_id: PMID:1537842
qualifier: enables
review:
summary: Direct [3H]cAMP binding assays established cAR3 affinity states
(approximately 20 and 500 nM), confirming intermediate-affinity cAMP
binding. Core molecular activity.
action: ACCEPT
reason: Radioligand binding measurements directly demonstrate cAMP binding by
cAR3 with defined affinity states, a central feature of the receptor.
supported_by:
- reference_id: PMID:1537842
supporting_text: 20 and 500 nM for cAR3
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16781008
qualifier: enables
review:
summary: A yeast two-hybrid screen identified the COP9 signalosome subunit
CSN5 as a potential interacting partner of a Dictyostelium cell-surface
receptor. This bare protein binding term is uninformative about molecular
function and the interaction is described as potential.
action: KEEP_AS_NON_CORE
reason: Per curation guidance, bare protein binding is not retained as a core
function. The reported CSN5 interaction is a specific but preliminary
(yeast two-hybrid, potential) finding whose functional significance for
cAR3 is unestablished; it is kept as non-core rather than treated as a core
molecular function.
supported_by:
- reference_id: PMID:16781008
supporting_text: we have identified the CSN5 subunit as a potential
interacting partner of a cell surface receptor of Dictyostelium
- term:
id: GO:0001646
label: cAMP receptor activity
evidence_type: IDA
original_reference_id: PMID:9578623
qualifier: enables
review:
summary: Direct evidence that cAR3 functions as a cAMP receptor, since
constitutive expression confers cAMP-sensing responses. This is the
defining core molecular function of the gene product.
action: ACCEPT
reason: cAR3 directly binds cAMP and transduces the signal as a receptor, as
demonstrated by reconstitution of cAMP responses upon its expression. This
is the core molecular function.
supported_by:
- reference_id: PMID:9578623
supporting_text: assessed the capacity of each to mediate chemotaxis
- term:
id: GO:0001646
label: cAMP receptor activity
evidence_type: IGI
original_reference_id: PMID:9578623
qualifier: enables
review:
summary: Genetic-interaction evidence (with cAR1) supporting cAR3 cAMP
receptor activity; the two receptors are partially redundant in cAMP
sensing. Core molecular function.
action: ACCEPT
reason: The car1-/car3- double mutant loses cAMP responsiveness while single
mutants retain it, genetically confirming cAR3 acts as a cAMP receptor
redundantly with cAR1.
supported_by:
- reference_id: PMID:9578623
supporting_text: rescue the developmental defect of car1-/car3- cells
- term:
id: GO:0030552
label: cAMP binding
evidence_type: IMP
original_reference_id: PMID:9578623
qualifier: enables
review:
summary: Mutational/expression analysis supporting cAMP binding by cAR3 as
part of its receptor function. Core molecular activity, concordant with the
direct binding studies.
action: ACCEPT
reason: cAMP binding is intrinsic to cAR3 receptor activity and is supported
across binding assays and functional expression studies.
supported_by:
- reference_id: PMID:1537842
supporting_text: 20 and 500 nM for cAR3
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with GO
terms
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000108
title: Automatic assignment of GO terms using logical inference, based on on inter-ontology
links
findings: []
- id: GO_REF:0000117
title: Electronic Gene Ontology annotations created by ARBA machine learning models
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:1537842
title: The cyclic nucleotide specificity of three cAMP receptors in Dictyostelium.
findings:
- statement: cAR3 binds cAMP with two affinity states (~20 and 500 nM in
phosphate buffer), distinct from cAR1 and cAR2.
supporting_text: there were two affinity states of about 30 and 300 nM for
cAR1 and 20 and 500 nM for cAR3 but no detectable affinity for cAR2
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Directly measures cAR3 cAMP-binding affinity by [3H]cAMP
binding; supports the cAMP binding annotations and intermediate-affinity
characterization.
- id: PMID:15473840
title: Chemoattractant signaling in dictyostelium discoideum.
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Authoritative review of Dictyostelium chemoattractant (cAMP
receptor) signaling; source of the TAS plasma-membrane annotation.
- id: PMID:16781008
title: The COP9 signalosome regulates cell proliferation of Dictyostelium discoideum.
findings:
- statement: A COP9 signalosome subunit (CSN5) was identified as a potential
interacting partner of a Dictyostelium cell-surface receptor by yeast
two-hybrid.
supporting_text: we have identified the CSN5 subunit as a potential
interacting partner of a cell surface receptor of Dictyostelium
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: Basis for the IPI protein-binding annotation; the interaction
is preliminary (potential, yeast two-hybrid) and its functional role for
cAR3 is unestablished.
- id: PMID:21103944
title: Chemoattractant-mediated Rap1 activation requires GPCR/G proteins.
findings:
- statement: Chemoattractant-induced Rap1 activation requires the cAMP
receptors cAR1/cAR3 and the G-protein subunit Galpha2.
supporting_text: The rapid Rap1 activation upon cAMP chemoattractant
stimulation was absent in cells lacking chemoattractant cAMP receptors
cAR1/cAR3 or a subunit of the heterotrimeric G-protein complex Gα2
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Places cAR1/cAR3 upstream of Rap1 activation; supports an
upstream signaling role but not intrinsic GTPase activator (GAP) activity
of the receptor.
- id: PMID:2722797
title: The cyclic nucleotide specificity of eight cAMP-binding proteins in Dictyostelium
discoideum is correlated into three groups.
findings:
- statement: The four forms of the Dictyostelium cell-surface cAMP receptor
(including cAR3) form one pharmacological group of cAMP-binding proteins.
supporting_text: four forms of the cell surface receptor
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Characterizes cell-surface cAMP receptor binding specificity;
supports cAMP binding and cell-surface localization.
- id: PMID:40934557
title: The Ras association domain of DydA as a specific reporter of activated RasG
in Dictyostelium.
findings:
- statement: Cortical/leading-edge recruitment of the RasG biosensor
GFP-RA1:DydA during chemotaxis requires cAR1/cAR3 and G-protein signaling.
supporting_text: This localization required GPCR Car1/3 and G-protein
signaling
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Basis for the regulation of protein localization to cell cortex
IGI annotation; demonstrates cAR1/cAR3 act upstream of cortical RasG
effector recruitment.
- id: PMID:7949426
title: Two cAMP receptors activate common signaling pathways in Dictyostelium.
findings:
- statement: cAR1 and cAR3 are partially redundant and couple to the same
heterotrimeric G protein to mediate cAMP relay and other responses.
supporting_text: We conclude that the functions of the cAR1 and cAR3
receptors are partially redundant and that both interact with the same
heterotrimeric G-protein to mediate these and other responses
- statement: car1-/car3- double-mutant cells are totally insensitive to cAMP.
supporting_text: these lines are totally insensitive to cAMP
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Establishes cAR3 as a G-protein-coupled cAMP receptor
functionally redundant with cAR1 in adenylyl cyclase / cAMP-relay
signaling.
- id: PMID:9578623
title: 'Switching of chemoattractant receptors programs development and morphogenesis
in Dictyostelium: receptor subtypes activate common responses at different agonist
concentrations.'
findings:
- statement: The Dictyostelium cAMP chemoattractant receptor family comprises
four sequentially expressed receptors (cAR1-cAR4).
supporting_text: The cAMP chemoattractant receptor family of Dictyostelium
discoideum is composed of four receptors (cAR1-cAR4), which are expressed
sequentially throughout the developmental transition from a unicellular to
a multicellular organism
- statement: cAR3 mediates chemotaxis, adenylyl cyclase activation and actin
polymerization and can rescue the car1-/car3- developmental defect.
supporting_text: assessed the capacity of each to mediate chemotaxis,
activation of adenylyl cyclase and actin polymerization, and rescue the
developmental defect of car1-/car3- cells
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Primary functional characterization of cAR3 by
constitutive-expression and double-mutant analysis; supports cAMP receptor
activity, chemotaxis, aggregation and adenylyl cyclase activation.
core_functions:
- description: cAR3 is a plasma-membrane seven-transmembrane G protein-coupled
receptor that binds extracellular cAMP and transduces the chemoattractant
signal through heterotrimeric G proteins, functioning redundantly with cAR1
to activate adenylyl cyclase (cAMP relay) and downstream responses during
aggregation and multicellular development.
molecular_function:
id: GO:0001646
label: cAMP receptor activity
locations:
- id: GO:0005886
label: plasma membrane
directly_involved_in:
- id: GO:0140582
label: adenylate cyclase-activating G protein-coupled cAMP receptor signaling
pathway
- id: GO:0006935
label: chemotaxis
- id: GO:0031152
label: aggregation involved in sorocarp development
supported_by:
- reference_id: PMID:9578623
supporting_text: assessed the capacity of each to mediate chemotaxis,
activation of adenylyl cyclase and actin polymerization, and rescue the
developmental defect of car1-/car3- cells
- reference_id: PMID:7949426
supporting_text: both interact with the same heterotrimeric G-protein to
mediate these and other responses
- reference_id: PMID:1537842
supporting_text: 20 and 500 nM for cAR3