gpaB encodes Gα2 (G alpha-2), the heterotrimeric G-protein alpha subunit of Dictyostelium discoideum that couples the cyclic AMP chemoattractant receptor cAR1 to intracellular signaling during the aggregation stage of development. Like other Gα subunits it binds guanine nucleotides and cycles between an inactive GDP-bound heterotrimeric state (associated with Gβγ) and an active GTP-bound state, functioning as a molecular switch with intrinsic GTPase activity. Gα2 is N-myristoylated on Gly-2 and S-palmitoylated on Cys-4, lipid modifications required for its plasma membrane localization; it also maintains a cytosolic pool that is shuttled to the membrane upon receptor activation. Upon cAMP stimulation, activated Gα2 engages downstream effectors including the Rap1-specific guanine nucleotide exchange factor GflB, thereby linking the GPCR to Ras/Rap signaling at the leading edge, as well as the RasGAP C2GAP1, and it is required for chemoattractant-stimulated phospholipase C activity. Gα2 is essential for cAMP relay, chemotaxis, cell aggregation and the transition to multicellular development, and cells lacking Gα2 fail to enter the developmental phase. Its amino-terminal MAPK docking (D-) motif is required for cAMP-stimulated nucleocytoplasmic shuttling of the GtaC transcription factor during aggregation.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0003925
G protein activity
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Phylogenetic (IBA) inference that Gα2 has G protein activity. This is the canonical molecular function of a heterotrimeric Gα subunit and is independently supported by direct experimental evidence in Dictyostelium.
Reason: Gα2 is a bona fide heterotrimeric G-protein alpha subunit that acts as a molecular switch (GTPase-driven GDP/GTP cycling). The IBA inference is correct and represents a core function of the gene.
Supporting Evidence:
PMID:8280098
mutant fgd A, lacking the G-protein alpha-subunit G alpha 2, showed no stimulation by either cAMP...indicating that G alpha 2 is the stimulatory G-protein
|
|
GO:0005737
cytoplasm
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: IBA inference that Gα2 is active in the cytoplasm. Gα2 does maintain a cytosolic pool (sequestered by Gip1) in addition to its membrane pool, so cytoplasmic activity is reasonable, though the primary site of action is the plasma membrane.
Reason: A cytosolic pool of the G protein exists and is shuttled to the membrane upon receptor activation, consistent with cytoplasmic localization/activity.
Supporting Evidence:
PMID:27044073
Gip1 was found to bind and sequester G proteins in cytosolic pools
|
|
GO:0007188
adenylate cyclase-modulating G protein-coupled receptor signaling pathway
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: IBA inference placing Gα2 in cAMP-receptor (adenylate cyclase-modulating) GPCR signaling. This matches the established role of Gα2 as the transducer coupling the cAR1 cAMP receptor during aggregation.
Reason: Gα2 is the alpha subunit coupling the cAMP chemoattractant GPCR to downstream effectors during aggregation, a core process. Also supported by a direct-evidence annotation to the same term (PMID:15563608).
Supporting Evidence:
PMID:34418534
required for chemotaxis to cAMP during the onset of multicellular development
|
|
GO:0005834
heterotrimeric G-protein complex
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: IBA inference of heterotrimeric G-protein complex membership. Directly confirmed in Dictyostelium by FRET between Gα2 and Gβγ subunits.
Reason: Gα2 assembles with Gβ and Gγ into a heterotrimer that dissociates on receptor activation; this is a core cellular-component assignment.
Supporting Evidence:
PMID:11264536
The G-protein heterotrimer rapidly dissociated and reassociated upon addition and removal of chemoattractant
|
|
GO:0001664
G protein-coupled receptor binding
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: InterPro2GO (IEA) inference that Gα2 binds a GPCR. Gα subunits are activated by, and physically couple to, agonist-occupied receptors; this is also supported by a direct-evidence annotation (PMID:11264536).
Reason: Receptor-catalyzed nucleotide exchange requires Gα2 engagement with the occupied cAMP receptor, a core aspect of its signaling function.
Supporting Evidence:
PMID:11264536
occupied receptors, whether or not they are phosphorylated, catalyze the G-protein cycle
|
|
GO:0003924
GTPase activity
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: IEA inference of GTPase activity. The intrinsic GTPase of the Gα subunit is the timer that returns the protein to its inactive GDP-bound state and is intrinsic to G protein switch function.
Reason: Gα2 contains the canonical G-alpha GTP-binding/hydrolysis motifs (G1-G5) and functions as a GTPase-driven molecular switch. This is a core molecular function, closely related to the more specific term GO:0003925 (G protein activity).
Supporting Evidence:
PMID:15715993
The switch mechanism is a function of the inherent GTPase activity of the alpha-subunit
|
|
GO:0005515
protein binding
|
IPI
PMID:42121920 Heterotrimeric G Protein-RasGAP Coupling Drives Adaptation D... |
KEEP AS NON CORE |
Summary: IPI protein-binding annotation from the C2GAP1 interaction study. Gα2 directly associates with the RasGAP C2GAP1, preferentially in its activated state, to attenuate Ras signaling during gradient sensing. The bare "protein binding" term is uninformative; the interaction itself is real but not a core molecular function descriptor.
Reason: The physical interaction with C2GAP1 is experimentally supported, but GO:0005515 is too generic to represent a core function. Retained as non-core evidence of an effector interaction.
Supporting Evidence:
PMID:42121920
C2GAP1 directly associates with Gα2 in both GDP- and GTP-bound states, with preferential binding to activated Gα2
|
|
GO:0005525
GTP binding
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: IEA inference of GTP binding, consistent with the guanine-nucleotide binding site in the G-alpha fold. Also supported by an IC annotation (PMID:8280098) and by numerous conserved GTP-binding residues in UniProt.
Reason: GTP binding is intrinsic to Gα2 function as a nucleotide-dependent molecular switch; a core molecular function.
Supporting Evidence:
PMID:8280098
mutant fgd A, lacking the G-protein alpha-subunit G alpha 2, showed no stimulation by either cAMP
|
|
GO:0005737
cytoplasm
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: ARBA machine-learning (IEA) localization to cytoplasm. Broad and partially redundant with the more specific plasma membrane and cytosol annotations; Gα2 does have a cytosolic pool in addition to its membrane pool.
Reason: Correct localization (a cytosolic pool of Gα2 exists), consistent with the IBA cytoplasm annotation, though the functionally important sites are the plasma membrane and the cytosolic reserve pool.
Supporting Evidence:
PMID:27044073
Gip1 was found to bind and sequester G proteins in cytosolic pools
|
|
GO:0005834
heterotrimeric G-protein complex
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: InterPro2GO (IEA) heterotrimeric complex membership, redundant with and corroborated by direct-evidence annotations (PMID:11264536, PMID:12217653).
Reason: Gα2 is a subunit of the heterotrimeric G protein; a core cellular component assignment.
Supporting Evidence:
PMID:11264536
The G-protein heterotrimer rapidly dissociated and reassociated upon addition and removal of chemoattractant
|
|
GO:0007010
cytoskeleton organization
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: ARBA (IEA) inference of a broad cytoskeleton-organization role. Gα2 signaling does drive actin cytoskeletal reorganization during chemoattractant-directed migration, but this is an indirect, downstream consequence and the term is very general.
Reason: The link to the cytoskeleton is real but indirect (via Ras/Rap and actin dynamics downstream of Gα2) and the generic ARBA term does not represent a core molecular function.
Supporting Evidence:
PMID:27237792
resulting in defective chemotaxis
|
|
GO:0007165
signal transduction
|
IEA
GO_REF:0000002 |
KEEP AS NON CORE |
Summary: IEA inference of the generic parent term "signal transduction". Correct but subsumed by the more specific GPCR-signaling annotations.
Reason: Accurate but too high-level to be informative; the specific role is in cAMP GPCR signaling captured by GO:0007186/GO:0007188.
Supporting Evidence:
PMID:15715993
act as molecular switches to relay information from transmembrane receptors to intracellular effectors
|
|
GO:0007186
G protein-coupled receptor signaling pathway
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: IEA inference placing Gα2 in GPCR signaling. This is the defining process for a heterotrimeric Gα subunit coupling the cAMP receptor cAR1.
Reason: GPCR signaling is a core biological process for Gα2; well supported by the experimental literature on cAMP receptor coupling.
Supporting Evidence:
PMID:34418534
required for chemotaxis to cAMP during the onset of multicellular development
|
|
GO:0019001
guanyl nucleotide binding
|
IEA
GO_REF:0000002 |
KEEP AS NON CORE |
Summary: IEA inference of guanyl nucleotide binding, the parent of GTP binding. Correct but redundant with the more specific GO:0005525 (GTP binding).
Reason: Accurate but non-specific; the informative term is GTP binding.
Supporting Evidence:
PMID:8280098
mutant fgd A, lacking the G-protein alpha-subunit G alpha 2, showed no stimulation by either cAMP
|
|
GO:0031683
G-protein beta/gamma-subunit complex binding
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: IEA inference that Gα2 binds the Gβγ dimer. This is intrinsic to heterotrimer assembly and is directly demonstrated by Gα2/Gβγ FRET and by the beta-subunit binding annotation (PMID:15563608).
Reason: Association with Gβγ is a defining property of the Gα subunit; core molecular function related to complex assembly.
Supporting Evidence:
PMID:15563608
triggers dissociation of Galpha and Gbetagamma subunits
|
|
GO:1904776
regulation of protein localization to cell cortex
|
IMP
PMID:40934557 The Ras association domain of DydA as a specific reporter of... |
KEEP AS NON CORE |
Summary: IMP annotation from the DydA RasG-reporter study, where cortical/leading-edge localization of the activated-RasG biosensor required GPCR (Car1/3) and G-protein signaling. This places Gα2 upstream of the cortical recruitment of a downstream Ras effector.
Reason: The effect on cortical protein localization is an indirect, downstream consequence of Gα2-initiated chemoattractant signaling rather than a core molecular function.
Supporting Evidence:
PMID:40934557
This localization required GPCR Car1/3 and G-protein signaling
|
|
GO:0007264
small GTPase-mediated signal transduction
|
IMP
PMID:8280098 Phospholipase C in Dictyostelium discoideum. Identification ... |
UNDECIDED |
Summary: IMP annotation to small GTPase-mediated signal transduction citing the phospholipase C study. Gα2 is a heterotrimeric (not small) GTPase, and the cited paper concerns cAMP/GTP-analog regulation of phospholipase C rather than small GTPase signaling per se. The cached content does not establish this specific term, and I cannot verify the curator's full-text basis.
Reason: The cited reference (abstract available) addresses G alpha 2 as the stimulatory G protein for phospholipase C, not small GTPase-mediated signal transduction. Although Gα2 does act upstream of Ras/Rap small GTPases in other studies, the term-to-reference support here cannot be confirmed, so per policy this is left UNDECIDED rather than removed.
|
|
GO:0005091
guanyl-nucleotide exchange factor adaptor activity
|
IDA
PMID:27237792 A Gα-Stimulated RapGEF Is a Receptor-Proximal Regulator of D... |
ACCEPT |
Summary: Direct-evidence annotation: activated Gα2 binds and stimulates the Rap1-specific GEF GflB, directly coupling the cAMP GPCR to Rap1. Gα2 thus acts as a Gα-stimulated GEF adaptor for monomeric G-protein signaling.
Reason: This captures a well-supported, receptor-proximal core molecular function of Gα2 as an effector-activating adaptor at the leading edge.
Supporting Evidence:
PMID:27237792
we identify GflB, a Gα2 binding partner that directly couples the Dictyostelium cyclic AMP GPCR to Rap1
PMID:27237792
functions as a Gα-stimulated, Rap1-specific guanine nucleotide exchange factor
|
|
GO:0030695
GTPase regulator activity
|
IDA
PMID:21103944 Chemoattractant-mediated Rap1 activation requires GPCR/G pro... |
KEEP AS NON CORE |
Summary: IDA annotation reflecting that chemoattractant-stimulated activation of the small GTPase Rap1 requires Gα2. Gα2 regulates Rap1 activation state (via GflB), consistent with GTPase regulator activity.
Reason: Correct but generic; the more precise mechanistic function is the GflB-stimulating GEF-adaptor activity (GO:0005091). Retained as non-core.
Supporting Evidence:
PMID:21103944
was absent in cells lacking chemoattractant cAMP receptors cAR1/cAR3 or a subunit of the heterotrimeric G-protein complex Gα2
|
|
GO:0009617
response to bacterium
|
IDA
PMID:35544746 Soil Amoebae Affect Iron and Chromium Reduction through Pref... |
UNDECIDED |
Summary: IDA annotation citing an environmental-microbiology study of Dictyostelium predation on metal-reducing bacteria. The cached abstract does not mention Gα2/gpaB, and I cannot verify a specific role for Gα2 in this response from the available text.
Reason: Per policy, an experimental annotation whose supporting publication I cannot verify (abstract-only, no mention of the gene) is left UNDECIDED rather than removed.
|
|
GO:0005886
plasma membrane
|
IDA
PMID:27044073 Heterotrimeric G-protein shuttling via Gip1 extends the dyna... |
ACCEPT |
Summary: Direct-evidence plasma membrane localization/activity. Receptor activation recruits the G protein to the plasma membrane from the cytosol (Gip1 shuttling), the site where Gα2 signaling occurs.
Reason: The plasma membrane is the principal site of Gα2 action; well supported by the shuttling data and by palmitoylation-dependent membrane targeting.
Supporting Evidence:
PMID:27044073
Receptor activation induced G-protein translocation to the plasma membrane from the cytosol in a Gip1-dependent manner
|
|
GO:0006355
regulation of DNA-templated transcription
|
IMP
PMID:34418534 MAPK docking motif in the Dictyostelium Gα2 subunit is requi... |
KEEP AS NON CORE |
Summary: IMP annotation from the MAPK docking-motif study. The Gα2 D-motif is required for cAMP-stimulated nucleocytoplasmic shuttling of the GtaC transcription factor, a process linked to gene regulation during aggregation. Gα2 thus influences transcription indirectly via control of GtaC.
Reason: The transcriptional effect is indirect (mediated through GtaC localization) rather than a direct/core molecular function of Gα2.
Supporting Evidence:
PMID:34418534
shuttling of GtaC is thought to be an important process for gene regulation during the aggregation phase of development
PMID:34418534
Expression of the Gα2 subunit but not the Gα2D− subunit fully restored the ability of cAMP to stimulate the translocation of the GtaC transcription factor
|
|
GO:0046825
regulation of protein export from nucleus
|
IMP
PMID:34418534 MAPK docking motif in the Dictyostelium Gα2 subunit is requi... |
KEEP AS NON CORE |
Summary: IMP annotation reflecting the requirement of the Gα2 D-motif for cAMP-stimulated movement of the GtaC transcription factor from the nucleus to the cytoplasm.
Reason: Gα2 regulates GtaC nuclear export indirectly through its signaling and docking-motif function; a downstream, non-core role.
Supporting Evidence:
PMID:34418534
movement of GtaC from the nucleus to the cytoplasm
|
|
GO:0005829
cytosol
|
IDA
PMID:27044073 Heterotrimeric G-protein shuttling via Gip1 extends the dyna... |
ACCEPT |
Summary: Direct-evidence cytosolic localization: a pool of the heterotrimeric G protein is sequestered in the cytosol by Gip1 and shuttled to the membrane upon receptor activation.
Reason: A defined cytosolic reserve pool of Gα2 exists and is functionally important for extending the dynamic range of chemotaxis.
Supporting Evidence:
PMID:27044073
Gip1 was found to bind and sequester G proteins in cytosolic pools
|
|
GO:0005886
plasma membrane
|
IDA
PMID:11264536 Receptor-mediated activation of heterotrimeric G-proteins in... |
ACCEPT |
Summary: Direct-evidence plasma membrane localization/activity consistent with the FRET studies of receptor-mediated G-protein activation at the cell surface and with palmitoylation-dependent membrane targeting.
Reason: The plasma membrane is the principal site of Gα2 signaling; corroborated across multiple studies.
Supporting Evidence:
PMID:29352733
plasma membrane localization
|
|
GO:0031681
G-protein beta-subunit binding
|
IDA
PMID:15563608 Quantitative imaging of single live cells reveals spatiotemp... |
ACCEPT |
Summary: Direct-evidence binding to the G-protein beta subunit, demonstrated by Gα/Gβγ FRET showing receptor-triggered dissociation and reassociation of the subunits.
Reason: Association with the Gβ(γ) subunit is a defining, core property of Gα2 within the heterotrimer.
Supporting Evidence:
PMID:15563608
triggers dissociation of Galpha and Gbetagamma subunits
|
|
GO:0005829
cytosol
|
IDA
PMID:11264536 Receptor-mediated activation of heterotrimeric G-proteins in... |
ACCEPT |
Summary: Direct-evidence cytosolic localization, consistent with the cytosolic pool of heterotrimeric G protein described in Dictyostelium.
Reason: Gα2 has a documented cytosolic pool in addition to its membrane pool.
Supporting Evidence:
PMID:27044073
Gip1 was found to bind and sequester G proteins in cytosolic pools
|
|
GO:0005525
GTP binding
|
IC
PMID:8280098 Phospholipase C in Dictyostelium discoideum. Identification ... |
ACCEPT |
Summary: Curator-inferred (IC) GTP binding, consistent with the GTP-analog-dependent stimulation of phospholipase C through Gα2 and the conserved guanine-nucleotide-binding fold.
Reason: GTP binding is an intrinsic, core molecular function of the Gα2 subunit.
Supporting Evidence:
PMID:8280098
mutant fgd A, lacking the G-protein alpha-subunit G alpha 2, showed no stimulation by either cAMP...indicating that G alpha 2 is the stimulatory G-protein
|
|
GO:0003925
G protein activity
|
IMP
PMID:8280098 Phospholipase C in Dictyostelium discoideum. Identification ... |
ACCEPT |
Summary: IMP annotation: loss of Gα2 (mutant fgd A) abolishes cAMP- and GTP-analog-stimulated phospholipase C activity, identifying Gα2 as the functional stimulatory G protein. Direct genetic support for G protein activity.
Reason: This is core molecular-function evidence: the Gα2-null phenotype demonstrates that Gα2 provides the stimulatory G protein activity coupling the cAMP receptor to phospholipase C.
Supporting Evidence:
PMID:8280098
mutant fgd A, lacking the G-protein alpha-subunit G alpha 2, showed no stimulation by either cAMP...indicating that G alpha 2 is the stimulatory G-protein
|
|
GO:0001664
G protein-coupled receptor binding
|
IDA
PMID:11264536 Receptor-mediated activation of heterotrimeric G-proteins in... |
ACCEPT |
Summary: Direct-evidence GPCR binding: in living cells, occupied cAMP receptors catalyze the Gα2 G-protein cycle, demonstrating functional coupling of Gα2 to the receptor.
Reason: Physical/functional coupling to the occupied cAMP receptor is a core aspect of Gα2 activation.
Supporting Evidence:
PMID:11264536
occupied receptors, whether or not they are phosphorylated, catalyze the G-protein cycle
|
|
GO:0005515
protein binding
|
IPI
PMID:15563608 Quantitative imaging of single live cells reveals spatiotemp... |
KEEP AS NON CORE |
Summary: Generic IPI protein-binding annotation from the FRET study; the meaningful interaction (with the Gβγ subunit) is better captured by GO:0031681 (G-protein beta-subunit binding) annotated from the same paper.
Reason: GO:0005515 is uninformative; the specific interaction is already recorded as beta-subunit binding. Retained as non-core.
Supporting Evidence:
PMID:15563608
triggers dissociation of Galpha and Gbetagamma subunits
|
|
GO:0005515
protein binding
|
IPI
PMID:23576747 Dictyostelium Ric8 is a nonreceptor guanine exchange factor ... |
KEEP AS NON CORE |
Summary: IPI protein-binding annotation from the Ric8 study. Gα proteins were used as bait to identify Ric8 as a nonreceptor GEF for Gα, evidencing a physical Gα2-Ric8 interaction. The bare term is uninformative.
Reason: The Ric8 interaction is experimentally supported but GO:0005515 is too generic to be a core function descriptor; retained as non-core.
Supporting Evidence:
PMID:23576747
nonreceptor guanine nucleotide exchange factor for Gα-protein
|
|
GO:0005515
protein binding
|
IPI
PMID:24349132 A RabGAP regulates life-cycle duration via trimeric G-protei... |
KEEP AS NON CORE |
Summary: IPI protein-binding annotation reflecting the interaction between the RabGAP Dd Rbg-3 and Gα subunits (including Gα2) in an activity-dependent manner. Bare "protein binding" is uninformative.
Reason: The Dd Rbg-3 interaction is supported but the generic term is not a core function; retained as non-core.
Supporting Evidence:
PMID:24349132
Dd Rbg-3 interacts with 2 Gα subunits in an activity-dependent manner in vitro
|
|
GO:0005515
protein binding
|
IPI
PMID:24930026 The Dictyostelium discoideum RACK1 orthologue has roles in g... |
KEEP AS NON CORE |
Summary: IPI protein-binding annotation from the DdRACK1 (gpbB) study, which shows DdRACK1 interacts with G-protein alpha, beta and gamma subunits by yeast two-hybrid, pulldown and immunoprecipitation. Bare term is uninformative.
Reason: The DdRACK1 interaction is supported but GO:0005515 is too generic for a core function; retained as non-core.
Supporting Evidence:
PMID:24930026
DdRACK1 interacts with G protein subunits alpha, beta and gamma as shown by yeast two-hybrid, pulldown, and immunoprecipitation assays
|
|
GO:0005515
protein binding
|
IPI
PMID:27044073 Heterotrimeric G-protein shuttling via Gip1 extends the dyna... |
KEEP AS NON CORE |
Summary: IPI protein-binding annotation reflecting the Gip1-G protein interaction, by which Gip1 binds and sequesters the heterotrimeric G protein in the cytosol. Bare term is uninformative.
Reason: The Gip1 interaction is supported but the generic term does not represent a core function; retained as non-core.
Supporting Evidence:
PMID:27044073
Gip1 was found to bind and sequester G proteins in cytosolic pools
|
|
GO:0005515
protein binding
|
IPI
PMID:27237792 A Gα-Stimulated RapGEF Is a Receptor-Proximal Regulator of D... |
KEEP AS NON CORE |
Summary: IPI protein-binding annotation for the Gα2-GflB interaction. This interaction is functionally captured by the GEF-adaptor activity annotation (GO:0005091) from the same study; the bare term is uninformative on its own.
Reason: The GflB interaction is core to Gα2 signaling but is better represented by GO:0005091; GO:0005515 itself is retained as non-core.
Supporting Evidence:
PMID:27237792
we identify GflB, a Gα2 binding partner that directly couples the Dictyostelium cyclic AMP GPCR to Rap1
|
|
GO:0005834
heterotrimeric G-protein complex
|
IDA
PMID:11264536 Receptor-mediated activation of heterotrimeric G-proteins in... |
ACCEPT |
Summary: Direct-evidence heterotrimeric complex membership: FRET between Gα2 and Gβγ demonstrates the assembled heterotrimer dissociating and reassociating with receptor activation.
Reason: Core cellular-component assignment, directly demonstrated in living cells.
Supporting Evidence:
PMID:11264536
The G-protein heterotrimer rapidly dissociated and reassociated upon addition and removal of chemoattractant
|
|
GO:0005834
heterotrimeric G-protein complex
|
IDA
PMID:12217653 Monitoring receptor-mediated activation of heterotrimeric G-... |
ACCEPT |
Summary: Direct-evidence heterotrimeric complex membership from the FRET methodology paper, in which Galpha2 and Gbetagamma were tagged to monitor the state of the G-protein heterotrimer.
Reason: Corroborates the core heterotrimeric-complex assignment for Gα2.
Supporting Evidence:
PMID:12217653
The Galpha(2)and Gbetagamma proteins were tagged with cyan and yellow fluorescent proteins and used to observe the state of the G-protein heterotrimer
|
|
GO:0005886
plasma membrane
|
IDA
PMID:29352733 Localization of palmitoylated and activated G protein α-subu... |
ACCEPT |
Summary: Direct-evidence plasma membrane localization. Gα2 is palmitoylated on Cys-4, and loss of this palmitoylation site redistributes Gα2 within the cell, establishing palmitoylation-dependent plasma membrane targeting.
Reason: The plasma membrane is the principal functional site of Gα2, dependent on its lipid modifications; a core localization.
Supporting Evidence:
PMID:29352733
Loss of this palmitoylation site results in redistribution of Gα2 within the cell
PMID:29352733
plasma membrane localization
|
|
GO:0007189
adenylate cyclase-activating G protein-coupled receptor signaling pathway
|
IMP
PMID:15715993 Loss-of-function mutations identified in the Helical domain ... |
KEEP AS NON CORE |
Summary: IMP annotation from the loss-of-function mutant screen. Gα2 is essential for the cAMP-driven aggregation program; loss of Gα2 blocks entry into development. The specific "adenylate cyclase-activating" wording is a curator interpretation of the cAMP-relay role.
Reason: Gα2 is required for the aggregation-stage cAMP signaling program, but adenylate cyclase activation in Dictyostelium is classically driven by Gβγ; the core Gα2 processes are better captured by chemotaxis, aggregation, and adenylate cyclase-modulating GPCR signaling. Retained as non-core.
Supporting Evidence:
PMID:15715993
G alpha2 is essential for the developmental life cycle of Dictyostelium
|
|
GO:0006909
phagocytosis
|
IMP
PMID:9647646 G protein beta subunit-null mutants are impaired in phagocyt... |
REMOVE |
Summary: IMP annotation citing the Gβ-null study. That paper explicitly reports that single Gα-subunit nulls, specifically Gα2 (and Gα4), do NOT show reduced phagocytosis; the phagocytosis defect is a property of the shared Gβ subunit, not Gα2. The annotation is therefore contradicted by its own cited reference.
Reason: The cited reference directly states that Gα2-null mutants are not impaired in phagocytosis, so attributing phagocytosis to Gα2 is not supported and is contradicted by the evidence. Phagocytosis in this context depends on Gβ, not the aggregation-stage Gα2.
Supporting Evidence:
PMID:9647646
nor did we find reduced phagocytosis rates in Gα2 and Gα4 null mutants
|
|
GO:0030041
actin filament polymerization
|
IMP
PMID:9647646 G protein beta subunit-null mutants are impaired in phagocyt... |
KEEP AS NON CORE |
Summary: IMP annotation citing the Gβ-null study, whose actin-polymerization phenotypes were characterized in Gβ-null cells. Chemoattractant (cAMP)-induced actin responses do require Gα2 upstream, so Gα2 can be considered upstream of actin polymerization during chemotaxis, but this is an indirect, downstream role.
Reason: Gα2 signaling drives actin remodeling during chemoattractant-directed migration, but actin filament polymerization is a downstream cytoskeletal output rather than a core molecular function of Gα2.
Supporting Evidence:
PMID:9647646
signaling through heterotrimeric G proteins is required for regulating the actin cytoskeleton during phagocytic uptake, as previously shown for chemotaxis
|
|
GO:0006935
chemotaxis
|
IMP
PMID:15715993 Loss-of-function mutations identified in the Helical domain ... |
ACCEPT |
Summary: IMP annotation: Gα2 is required for chemotaxis to cAMP at the onset of multicellular development, and loss-of-function Gα2 mutations block the developmental/aggregation program.
Reason: Chemotaxis toward cAMP is a core biological process mediated by Gα2 and is strongly supported by the genetics.
Supporting Evidence:
PMID:34418534
required for chemotaxis to cAMP during the onset of multicellular development
PMID:15715993
the loss of G alpha2 function results in a
|
|
GO:0031152
aggregation involved in sorocarp development
|
IMP
PMID:15715993 Loss-of-function mutations identified in the Helical domain ... |
ACCEPT |
Summary: IMP annotation: Gα2 is essential for aggregation and the developmental life cycle; loss of Gα2 causes failure of cells to enter the developmental phase. This is the defining Gα2-null phenotype.
Reason: Aggregation during sorocarp (fruiting body) development is a core biological process for Gα2, essential and well established.
Supporting Evidence:
PMID:15715993
G alpha2 is essential for the developmental life cycle of Dictyostelium
PMID:34418534
The Dictyostelium Gα2 G protein subunit is required for chemotaxis to cAMP during the onset of multicellular development
|
|
GO:0007188
adenylate cyclase-modulating G protein-coupled receptor signaling pathway
|
IDA
PMID:15563608 Quantitative imaging of single live cells reveals spatiotemp... |
ACCEPT |
Summary: Direct-evidence involvement in cAMP GPCR (adenylate cyclase-modulating) signaling, from the quantitative single-cell imaging of chemoattractant receptor activation and G-protein dynamics.
Reason: Gα2 transduces cAMP GPCR signaling during gradient sensing, a core process.
Supporting Evidence:
PMID:15563608
triggers dissociation of Galpha and Gbetagamma subunits
|
id: P16051
gene_symbol: gpaB
product_type: PROTEIN
status: COMPLETE
taxon:
id: NCBITaxon:44689
label: Dictyostelium discoideum
description: >-
gpaB encodes Gα2 (G alpha-2), the heterotrimeric G-protein alpha subunit of
Dictyostelium discoideum that couples the cyclic AMP chemoattractant receptor
cAR1 to intracellular signaling during the aggregation stage of development.
Like other Gα subunits it binds guanine nucleotides and cycles between an
inactive GDP-bound heterotrimeric state (associated with Gβγ) and an active
GTP-bound state, functioning as a molecular switch with intrinsic GTPase
activity. Gα2 is N-myristoylated on Gly-2 and S-palmitoylated on Cys-4,
lipid modifications required for its plasma membrane localization; it also
maintains a cytosolic pool that is shuttled to the membrane upon receptor
activation. Upon cAMP stimulation, activated Gα2 engages downstream effectors
including the Rap1-specific guanine nucleotide exchange factor GflB, thereby
linking the GPCR to Ras/Rap signaling at the leading edge, as well as the
RasGAP C2GAP1, and it is required for chemoattractant-stimulated phospholipase
C activity. Gα2 is essential for cAMP relay, chemotaxis, cell aggregation and
the transition to multicellular development, and cells lacking Gα2 fail to
enter the developmental phase. Its amino-terminal MAPK docking (D-) motif is
required for cAMP-stimulated nucleocytoplasmic shuttling of the GtaC
transcription factor during aggregation.
existing_annotations:
- term:
id: GO:0003925
label: G protein activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
summary: >-
Phylogenetic (IBA) inference that Gα2 has G protein activity. This is the
canonical molecular function of a heterotrimeric Gα subunit and is
independently supported by direct experimental evidence in Dictyostelium.
action: ACCEPT
reason: >-
Gα2 is a bona fide heterotrimeric G-protein alpha subunit that acts as a
molecular switch (GTPase-driven GDP/GTP cycling). The IBA inference is
correct and represents a core function of the gene.
supported_by:
- reference_id: PMID:8280098
supporting_text: mutant fgd A, lacking the G-protein alpha-subunit G alpha 2, showed no stimulation by either cAMP...indicating that G alpha 2 is the stimulatory G-protein
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: >-
IBA inference that Gα2 is active in the cytoplasm. Gα2 does maintain a
cytosolic pool (sequestered by Gip1) in addition to its membrane pool,
so cytoplasmic activity is reasonable, though the primary site of action
is the plasma membrane.
action: ACCEPT
reason: >-
A cytosolic pool of the G protein exists and is shuttled to the membrane
upon receptor activation, consistent with cytoplasmic localization/activity.
supported_by:
- reference_id: PMID:27044073
supporting_text: Gip1 was found to bind and sequester G proteins in cytosolic pools
- term:
id: GO:0007188
label: adenylate cyclase-modulating G protein-coupled receptor signaling pathway
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: >-
IBA inference placing Gα2 in cAMP-receptor (adenylate cyclase-modulating)
GPCR signaling. This matches the established role of Gα2 as the transducer
coupling the cAR1 cAMP receptor during aggregation.
action: ACCEPT
reason: >-
Gα2 is the alpha subunit coupling the cAMP chemoattractant GPCR to
downstream effectors during aggregation, a core process. Also supported by
a direct-evidence annotation to the same term (PMID:15563608).
supported_by:
- reference_id: PMID:34418534
supporting_text: required for chemotaxis to cAMP during the onset of multicellular development
- term:
id: GO:0005834
label: heterotrimeric G-protein complex
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: part_of
review:
summary: >-
IBA inference of heterotrimeric G-protein complex membership. Directly
confirmed in Dictyostelium by FRET between Gα2 and Gβγ subunits.
action: ACCEPT
reason: >-
Gα2 assembles with Gβ and Gγ into a heterotrimer that dissociates on
receptor activation; this is a core cellular-component assignment.
supported_by:
- reference_id: PMID:11264536
supporting_text: The G-protein heterotrimer rapidly dissociated and reassociated upon addition and removal of chemoattractant
- term:
id: GO:0001664
label: G protein-coupled receptor binding
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: enables
review:
summary: >-
InterPro2GO (IEA) inference that Gα2 binds a GPCR. Gα subunits are
activated by, and physically couple to, agonist-occupied receptors; this
is also supported by a direct-evidence annotation (PMID:11264536).
action: ACCEPT
reason: >-
Receptor-catalyzed nucleotide exchange requires Gα2 engagement with the
occupied cAMP receptor, a core aspect of its signaling function.
supported_by:
- reference_id: PMID:11264536
supporting_text: occupied receptors, whether or not they are phosphorylated, catalyze the G-protein cycle
- term:
id: GO:0003924
label: GTPase activity
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: enables
review:
summary: >-
IEA inference of GTPase activity. The intrinsic GTPase of the Gα subunit
is the timer that returns the protein to its inactive GDP-bound state and
is intrinsic to G protein switch function.
action: ACCEPT
reason: >-
Gα2 contains the canonical G-alpha GTP-binding/hydrolysis motifs (G1-G5)
and functions as a GTPase-driven molecular switch. This is a core
molecular function, closely related to the more specific term
GO:0003925 (G protein activity).
supported_by:
- reference_id: PMID:15715993
supporting_text: The switch mechanism is a function of the inherent GTPase activity of the alpha-subunit
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:42121920
qualifier: enables
review:
summary: >-
IPI protein-binding annotation from the C2GAP1 interaction study. Gα2
directly associates with the RasGAP C2GAP1, preferentially in its activated
state, to attenuate Ras signaling during gradient sensing. The bare
"protein binding" term is uninformative; the interaction itself is real
but not a core molecular function descriptor.
action: KEEP_AS_NON_CORE
reason: >-
The physical interaction with C2GAP1 is experimentally supported, but
GO:0005515 is too generic to represent a core function. Retained as
non-core evidence of an effector interaction.
supported_by:
- reference_id: PMID:42121920
supporting_text: C2GAP1 directly associates with Gα2 in both GDP- and GTP-bound states, with preferential binding to activated Gα2
- term:
id: GO:0005525
label: GTP binding
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: enables
review:
summary: >-
IEA inference of GTP binding, consistent with the guanine-nucleotide
binding site in the G-alpha fold. Also supported by an IC annotation
(PMID:8280098) and by numerous conserved GTP-binding residues in UniProt.
action: ACCEPT
reason: >-
GTP binding is intrinsic to Gα2 function as a nucleotide-dependent
molecular switch; a core molecular function.
supported_by:
- reference_id: PMID:8280098
supporting_text: mutant fgd A, lacking the G-protein alpha-subunit G alpha 2, showed no stimulation by either cAMP
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: located_in
review:
summary: >-
ARBA machine-learning (IEA) localization to cytoplasm. Broad and partially
redundant with the more specific plasma membrane and cytosol annotations;
Gα2 does have a cytosolic pool in addition to its membrane pool.
action: ACCEPT
reason: >-
Correct localization (a cytosolic pool of Gα2 exists), consistent with the
IBA cytoplasm annotation, though the functionally important sites are the
plasma membrane and the cytosolic reserve pool.
supported_by:
- reference_id: PMID:27044073
supporting_text: Gip1 was found to bind and sequester G proteins in cytosolic pools
- term:
id: GO:0005834
label: heterotrimeric G-protein complex
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: part_of
review:
summary: >-
InterPro2GO (IEA) heterotrimeric complex membership, redundant with and
corroborated by direct-evidence annotations (PMID:11264536, PMID:12217653).
action: ACCEPT
reason: >-
Gα2 is a subunit of the heterotrimeric G protein; a core cellular
component assignment.
supported_by:
- reference_id: PMID:11264536
supporting_text: The G-protein heterotrimer rapidly dissociated and reassociated upon addition and removal of chemoattractant
- term:
id: GO:0007010
label: cytoskeleton organization
evidence_type: IEA
original_reference_id: GO_REF:0000117
qualifier: involved_in
review:
summary: >-
ARBA (IEA) inference of a broad cytoskeleton-organization role. Gα2
signaling does drive actin cytoskeletal reorganization during
chemoattractant-directed migration, but this is an indirect, downstream
consequence and the term is very general.
action: KEEP_AS_NON_CORE
reason: >-
The link to the cytoskeleton is real but indirect (via Ras/Rap and actin
dynamics downstream of Gα2) and the generic ARBA term does not represent a
core molecular function.
supported_by:
- reference_id: PMID:27237792
supporting_text: resulting in defective chemotaxis
- term:
id: GO:0007165
label: signal transduction
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: involved_in
review:
summary: >-
IEA inference of the generic parent term "signal transduction". Correct
but subsumed by the more specific GPCR-signaling annotations.
action: KEEP_AS_NON_CORE
reason: >-
Accurate but too high-level to be informative; the specific role is in
cAMP GPCR signaling captured by GO:0007186/GO:0007188.
supported_by:
- reference_id: PMID:15715993
supporting_text: act as molecular switches to relay information from transmembrane receptors to intracellular effectors
- term:
id: GO:0007186
label: G protein-coupled receptor signaling pathway
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: involved_in
review:
summary: >-
IEA inference placing Gα2 in GPCR signaling. This is the defining process
for a heterotrimeric Gα subunit coupling the cAMP receptor cAR1.
action: ACCEPT
reason: >-
GPCR signaling is a core biological process for Gα2; well supported by the
experimental literature on cAMP receptor coupling.
supported_by:
- reference_id: PMID:34418534
supporting_text: required for chemotaxis to cAMP during the onset of multicellular development
- term:
id: GO:0019001
label: guanyl nucleotide binding
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: enables
review:
summary: >-
IEA inference of guanyl nucleotide binding, the parent of GTP binding.
Correct but redundant with the more specific GO:0005525 (GTP binding).
action: KEEP_AS_NON_CORE
reason: >-
Accurate but non-specific; the informative term is GTP binding.
supported_by:
- reference_id: PMID:8280098
supporting_text: mutant fgd A, lacking the G-protein alpha-subunit G alpha 2, showed no stimulation by either cAMP
- term:
id: GO:0031683
label: G-protein beta/gamma-subunit complex binding
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: enables
review:
summary: >-
IEA inference that Gα2 binds the Gβγ dimer. This is intrinsic to
heterotrimer assembly and is directly demonstrated by Gα2/Gβγ FRET and by
the beta-subunit binding annotation (PMID:15563608).
action: ACCEPT
reason: >-
Association with Gβγ is a defining property of the Gα subunit; core
molecular function related to complex assembly.
supported_by:
- reference_id: PMID:15563608
supporting_text: triggers dissociation of Galpha and Gbetagamma subunits
- term:
id: GO:1904776
label: regulation of protein localization to cell cortex
evidence_type: IMP
original_reference_id: PMID:40934557
qualifier: acts_upstream_of_or_within
review:
summary: >-
IMP annotation from the DydA RasG-reporter study, where cortical/leading-edge
localization of the activated-RasG biosensor required GPCR (Car1/3) and
G-protein signaling. This places Gα2 upstream of the cortical recruitment
of a downstream Ras effector.
action: KEEP_AS_NON_CORE
reason: >-
The effect on cortical protein localization is an indirect, downstream
consequence of Gα2-initiated chemoattractant signaling rather than a core
molecular function.
supported_by:
- reference_id: PMID:40934557
supporting_text: This localization required GPCR Car1/3 and G-protein signaling
- term:
id: GO:0007264
label: small GTPase-mediated signal transduction
evidence_type: IMP
original_reference_id: PMID:8280098
qualifier: involved_in
review:
summary: >-
IMP annotation to small GTPase-mediated signal transduction citing the
phospholipase C study. Gα2 is a heterotrimeric (not small) GTPase, and the
cited paper concerns cAMP/GTP-analog regulation of phospholipase C rather
than small GTPase signaling per se. The cached content does not establish
this specific term, and I cannot verify the curator's full-text basis.
action: UNDECIDED
reason: >-
The cited reference (abstract available) addresses G alpha 2 as the
stimulatory G protein for phospholipase C, not small GTPase-mediated signal
transduction. Although Gα2 does act upstream of Ras/Rap small GTPases in
other studies, the term-to-reference support here cannot be confirmed, so
per policy this is left UNDECIDED rather than removed.
- term:
id: GO:0005091
label: guanyl-nucleotide exchange factor adaptor activity
evidence_type: IDA
original_reference_id: PMID:27237792
qualifier: enables
review:
summary: >-
Direct-evidence annotation: activated Gα2 binds and stimulates the
Rap1-specific GEF GflB, directly coupling the cAMP GPCR to Rap1. Gα2 thus
acts as a Gα-stimulated GEF adaptor for monomeric G-protein signaling.
action: ACCEPT
reason: >-
This captures a well-supported, receptor-proximal core molecular function
of Gα2 as an effector-activating adaptor at the leading edge.
supported_by:
- reference_id: PMID:27237792
supporting_text: we identify GflB, a Gα2 binding partner that directly couples the Dictyostelium cyclic AMP GPCR to Rap1
- reference_id: PMID:27237792
supporting_text: functions as a Gα-stimulated, Rap1-specific guanine nucleotide exchange factor
- term:
id: GO:0030695
label: GTPase regulator activity
evidence_type: IDA
original_reference_id: PMID:21103944
qualifier: enables
review:
summary: >-
IDA annotation reflecting that chemoattractant-stimulated activation of the
small GTPase Rap1 requires Gα2. Gα2 regulates Rap1 activation state
(via GflB), consistent with GTPase regulator activity.
action: KEEP_AS_NON_CORE
reason: >-
Correct but generic; the more precise mechanistic function is the
GflB-stimulating GEF-adaptor activity (GO:0005091). Retained as non-core.
supported_by:
- reference_id: PMID:21103944
supporting_text: was absent in cells lacking chemoattractant cAMP receptors cAR1/cAR3 or a subunit of the heterotrimeric G-protein complex Gα2
- term:
id: GO:0009617
label: response to bacterium
evidence_type: IDA
original_reference_id: PMID:35544746
qualifier: acts_upstream_of_or_within
review:
summary: >-
IDA annotation citing an environmental-microbiology study of Dictyostelium
predation on metal-reducing bacteria. The cached abstract does not mention
Gα2/gpaB, and I cannot verify a specific role for Gα2 in this response
from the available text.
action: UNDECIDED
reason: >-
Per policy, an experimental annotation whose supporting publication I
cannot verify (abstract-only, no mention of the gene) is left UNDECIDED
rather than removed.
- term:
id: GO:0005886
label: plasma membrane
evidence_type: IDA
original_reference_id: PMID:27044073
qualifier: is_active_in
review:
summary: >-
Direct-evidence plasma membrane localization/activity. Receptor activation
recruits the G protein to the plasma membrane from the cytosol (Gip1
shuttling), the site where Gα2 signaling occurs.
action: ACCEPT
reason: >-
The plasma membrane is the principal site of Gα2 action; well supported by
the shuttling data and by palmitoylation-dependent membrane targeting.
supported_by:
- reference_id: PMID:27044073
supporting_text: Receptor activation induced G-protein translocation to the plasma membrane from the cytosol in a Gip1-dependent manner
- term:
id: GO:0006355
label: regulation of DNA-templated transcription
evidence_type: IMP
original_reference_id: PMID:34418534
qualifier: involved_in
review:
summary: >-
IMP annotation from the MAPK docking-motif study. The Gα2 D-motif is
required for cAMP-stimulated nucleocytoplasmic shuttling of the GtaC
transcription factor, a process linked to gene regulation during
aggregation. Gα2 thus influences transcription indirectly via control of
GtaC.
action: KEEP_AS_NON_CORE
reason: >-
The transcriptional effect is indirect (mediated through GtaC
localization) rather than a direct/core molecular function of Gα2.
supported_by:
- reference_id: PMID:34418534
supporting_text: shuttling of GtaC is thought to be an important process for gene regulation during the aggregation phase of development
- reference_id: PMID:34418534
supporting_text: Expression of the Gα2 subunit but not the Gα2D− subunit fully restored the ability of cAMP to stimulate the translocation of the GtaC transcription factor
- term:
id: GO:0046825
label: regulation of protein export from nucleus
evidence_type: IMP
original_reference_id: PMID:34418534
qualifier: involved_in
review:
summary: >-
IMP annotation reflecting the requirement of the Gα2 D-motif for
cAMP-stimulated movement of the GtaC transcription factor from the nucleus
to the cytoplasm.
action: KEEP_AS_NON_CORE
reason: >-
Gα2 regulates GtaC nuclear export indirectly through its signaling and
docking-motif function; a downstream, non-core role.
supported_by:
- reference_id: PMID:34418534
supporting_text: movement of GtaC from the nucleus to the cytoplasm
- term:
id: GO:0005829
label: cytosol
evidence_type: IDA
original_reference_id: PMID:27044073
qualifier: located_in
review:
summary: >-
Direct-evidence cytosolic localization: a pool of the heterotrimeric G
protein is sequestered in the cytosol by Gip1 and shuttled to the membrane
upon receptor activation.
action: ACCEPT
reason: >-
A defined cytosolic reserve pool of Gα2 exists and is functionally
important for extending the dynamic range of chemotaxis.
supported_by:
- reference_id: PMID:27044073
supporting_text: Gip1 was found to bind and sequester G proteins in cytosolic pools
- term:
id: GO:0005886
label: plasma membrane
evidence_type: IDA
original_reference_id: PMID:11264536
qualifier: is_active_in
review:
summary: >-
Direct-evidence plasma membrane localization/activity consistent with the
FRET studies of receptor-mediated G-protein activation at the cell surface
and with palmitoylation-dependent membrane targeting.
action: ACCEPT
reason: >-
The plasma membrane is the principal site of Gα2 signaling; corroborated
across multiple studies.
supported_by:
- reference_id: PMID:29352733
supporting_text: plasma membrane localization
- term:
id: GO:0031681
label: G-protein beta-subunit binding
evidence_type: IDA
original_reference_id: PMID:15563608
qualifier: enables
review:
summary: >-
Direct-evidence binding to the G-protein beta subunit, demonstrated by
Gα/Gβγ FRET showing receptor-triggered dissociation and reassociation of
the subunits.
action: ACCEPT
reason: >-
Association with the Gβ(γ) subunit is a defining, core property of Gα2
within the heterotrimer.
supported_by:
- reference_id: PMID:15563608
supporting_text: triggers dissociation of Galpha and Gbetagamma subunits
- term:
id: GO:0005829
label: cytosol
evidence_type: IDA
original_reference_id: PMID:11264536
qualifier: located_in
review:
summary: >-
Direct-evidence cytosolic localization, consistent with the cytosolic pool
of heterotrimeric G protein described in Dictyostelium.
action: ACCEPT
reason: >-
Gα2 has a documented cytosolic pool in addition to its membrane pool.
supported_by:
- reference_id: PMID:27044073
supporting_text: Gip1 was found to bind and sequester G proteins in cytosolic pools
- term:
id: GO:0005525
label: GTP binding
evidence_type: IC
original_reference_id: PMID:8280098
qualifier: enables
review:
summary: >-
Curator-inferred (IC) GTP binding, consistent with the GTP-analog-dependent
stimulation of phospholipase C through Gα2 and the conserved
guanine-nucleotide-binding fold.
action: ACCEPT
reason: >-
GTP binding is an intrinsic, core molecular function of the Gα2 subunit.
supported_by:
- reference_id: PMID:8280098
supporting_text: mutant fgd A, lacking the G-protein alpha-subunit G alpha 2, showed no stimulation by either cAMP...indicating that G alpha 2 is the stimulatory G-protein
- term:
id: GO:0003925
label: G protein activity
evidence_type: IMP
original_reference_id: PMID:8280098
qualifier: enables
review:
summary: >-
IMP annotation: loss of Gα2 (mutant fgd A) abolishes cAMP- and
GTP-analog-stimulated phospholipase C activity, identifying Gα2 as the
functional stimulatory G protein. Direct genetic support for G protein
activity.
action: ACCEPT
reason: >-
This is core molecular-function evidence: the Gα2-null phenotype
demonstrates that Gα2 provides the stimulatory G protein activity coupling
the cAMP receptor to phospholipase C.
supported_by:
- reference_id: PMID:8280098
supporting_text: mutant fgd A, lacking the G-protein alpha-subunit G alpha 2, showed no stimulation by either cAMP...indicating that G alpha 2 is the stimulatory G-protein
- term:
id: GO:0001664
label: G protein-coupled receptor binding
evidence_type: IDA
original_reference_id: PMID:11264536
qualifier: enables
review:
summary: >-
Direct-evidence GPCR binding: in living cells, occupied cAMP receptors
catalyze the Gα2 G-protein cycle, demonstrating functional coupling of Gα2
to the receptor.
action: ACCEPT
reason: >-
Physical/functional coupling to the occupied cAMP receptor is a core
aspect of Gα2 activation.
supported_by:
- reference_id: PMID:11264536
supporting_text: occupied receptors, whether or not they are phosphorylated, catalyze the G-protein cycle
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:15563608
qualifier: enables
review:
summary: >-
Generic IPI protein-binding annotation from the FRET study; the meaningful
interaction (with the Gβγ subunit) is better captured by GO:0031681
(G-protein beta-subunit binding) annotated from the same paper.
action: KEEP_AS_NON_CORE
reason: >-
GO:0005515 is uninformative; the specific interaction is already recorded
as beta-subunit binding. Retained as non-core.
supported_by:
- reference_id: PMID:15563608
supporting_text: triggers dissociation of Galpha and Gbetagamma subunits
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:23576747
qualifier: enables
review:
summary: >-
IPI protein-binding annotation from the Ric8 study. Gα proteins were used
as bait to identify Ric8 as a nonreceptor GEF for Gα, evidencing a
physical Gα2-Ric8 interaction. The bare term is uninformative.
action: KEEP_AS_NON_CORE
reason: >-
The Ric8 interaction is experimentally supported but GO:0005515 is too
generic to be a core function descriptor; retained as non-core.
supported_by:
- reference_id: PMID:23576747
supporting_text: nonreceptor guanine nucleotide exchange factor for Gα-protein
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:24349132
qualifier: enables
review:
summary: >-
IPI protein-binding annotation reflecting the interaction between the
RabGAP Dd Rbg-3 and Gα subunits (including Gα2) in an activity-dependent
manner. Bare "protein binding" is uninformative.
action: KEEP_AS_NON_CORE
reason: >-
The Dd Rbg-3 interaction is supported but the generic term is not a core
function; retained as non-core.
supported_by:
- reference_id: PMID:24349132
supporting_text: Dd Rbg-3 interacts with 2 Gα subunits in an activity-dependent manner in vitro
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:24930026
qualifier: enables
review:
summary: >-
IPI protein-binding annotation from the DdRACK1 (gpbB) study, which shows
DdRACK1 interacts with G-protein alpha, beta and gamma subunits by yeast
two-hybrid, pulldown and immunoprecipitation. Bare term is uninformative.
action: KEEP_AS_NON_CORE
reason: >-
The DdRACK1 interaction is supported but GO:0005515 is too generic for a
core function; retained as non-core.
supported_by:
- reference_id: PMID:24930026
supporting_text: DdRACK1 interacts with G protein subunits alpha, beta and gamma as shown by yeast two-hybrid, pulldown, and immunoprecipitation assays
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:27044073
qualifier: enables
review:
summary: >-
IPI protein-binding annotation reflecting the Gip1-G protein interaction,
by which Gip1 binds and sequesters the heterotrimeric G protein in the
cytosol. Bare term is uninformative.
action: KEEP_AS_NON_CORE
reason: >-
The Gip1 interaction is supported but the generic term does not represent
a core function; retained as non-core.
supported_by:
- reference_id: PMID:27044073
supporting_text: Gip1 was found to bind and sequester G proteins in cytosolic pools
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:27237792
qualifier: enables
review:
summary: >-
IPI protein-binding annotation for the Gα2-GflB interaction. This
interaction is functionally captured by the GEF-adaptor activity
annotation (GO:0005091) from the same study; the bare term is
uninformative on its own.
action: KEEP_AS_NON_CORE
reason: >-
The GflB interaction is core to Gα2 signaling but is better represented by
GO:0005091; GO:0005515 itself is retained as non-core.
supported_by:
- reference_id: PMID:27237792
supporting_text: we identify GflB, a Gα2 binding partner that directly couples the Dictyostelium cyclic AMP GPCR to Rap1
- term:
id: GO:0005834
label: heterotrimeric G-protein complex
evidence_type: IDA
original_reference_id: PMID:11264536
qualifier: part_of
review:
summary: >-
Direct-evidence heterotrimeric complex membership: FRET between Gα2 and
Gβγ demonstrates the assembled heterotrimer dissociating and reassociating
with receptor activation.
action: ACCEPT
reason: >-
Core cellular-component assignment, directly demonstrated in living cells.
supported_by:
- reference_id: PMID:11264536
supporting_text: The G-protein heterotrimer rapidly dissociated and reassociated upon addition and removal of chemoattractant
- term:
id: GO:0005834
label: heterotrimeric G-protein complex
evidence_type: IDA
original_reference_id: PMID:12217653
qualifier: part_of
review:
summary: >-
Direct-evidence heterotrimeric complex membership from the FRET
methodology paper, in which Galpha2 and Gbetagamma were tagged to monitor
the state of the G-protein heterotrimer.
action: ACCEPT
reason: >-
Corroborates the core heterotrimeric-complex assignment for Gα2.
supported_by:
- reference_id: PMID:12217653
supporting_text: The Galpha(2)and Gbetagamma proteins were tagged with cyan and yellow fluorescent proteins and used to observe the state of the G-protein heterotrimer
- term:
id: GO:0005886
label: plasma membrane
evidence_type: IDA
original_reference_id: PMID:29352733
qualifier: is_active_in
review:
summary: >-
Direct-evidence plasma membrane localization. Gα2 is palmitoylated on
Cys-4, and loss of this palmitoylation site redistributes Gα2 within the
cell, establishing palmitoylation-dependent plasma membrane targeting.
action: ACCEPT
reason: >-
The plasma membrane is the principal functional site of Gα2, dependent on
its lipid modifications; a core localization.
supported_by:
- reference_id: PMID:29352733
supporting_text: Loss of this palmitoylation site results in redistribution of Gα2 within the cell
- reference_id: PMID:29352733
supporting_text: plasma membrane localization
- term:
id: GO:0007189
label: adenylate cyclase-activating G protein-coupled receptor signaling pathway
evidence_type: IMP
original_reference_id: PMID:15715993
qualifier: involved_in
review:
summary: >-
IMP annotation from the loss-of-function mutant screen. Gα2 is essential
for the cAMP-driven aggregation program; loss of Gα2 blocks entry into
development. The specific "adenylate cyclase-activating" wording is a
curator interpretation of the cAMP-relay role.
action: KEEP_AS_NON_CORE
reason: >-
Gα2 is required for the aggregation-stage cAMP signaling program, but
adenylate cyclase activation in Dictyostelium is classically driven by
Gβγ; the core Gα2 processes are better captured by chemotaxis, aggregation,
and adenylate cyclase-modulating GPCR signaling. Retained as non-core.
supported_by:
- reference_id: PMID:15715993
supporting_text: G alpha2 is essential for the developmental life cycle of Dictyostelium
- term:
id: GO:0006909
label: phagocytosis
evidence_type: IMP
original_reference_id: PMID:9647646
qualifier: acts_upstream_of_or_within
review:
summary: >-
IMP annotation citing the Gβ-null study. That paper explicitly reports
that single Gα-subunit nulls, specifically Gα2 (and Gα4), do NOT show
reduced phagocytosis; the phagocytosis defect is a property of the shared
Gβ subunit, not Gα2. The annotation is therefore contradicted by its own
cited reference.
action: REMOVE
reason: >-
The cited reference directly states that Gα2-null mutants are not impaired
in phagocytosis, so attributing phagocytosis to Gα2 is not supported and is
contradicted by the evidence. Phagocytosis in this context depends on Gβ,
not the aggregation-stage Gα2.
supported_by:
- reference_id: PMID:9647646
supporting_text: nor did we find reduced phagocytosis rates in Gα2 and Gα4 null mutants
- term:
id: GO:0030041
label: actin filament polymerization
evidence_type: IMP
original_reference_id: PMID:9647646
qualifier: acts_upstream_of_or_within
review:
summary: >-
IMP annotation citing the Gβ-null study, whose actin-polymerization
phenotypes were characterized in Gβ-null cells. Chemoattractant
(cAMP)-induced actin responses do require Gα2 upstream, so Gα2 can be
considered upstream of actin polymerization during chemotaxis, but this is
an indirect, downstream role.
action: KEEP_AS_NON_CORE
reason: >-
Gα2 signaling drives actin remodeling during chemoattractant-directed
migration, but actin filament polymerization is a downstream cytoskeletal
output rather than a core molecular function of Gα2.
supported_by:
- reference_id: PMID:9647646
supporting_text: signaling through heterotrimeric G proteins is required for regulating the actin cytoskeleton during phagocytic uptake, as previously shown for chemotaxis
- term:
id: GO:0006935
label: chemotaxis
evidence_type: IMP
original_reference_id: PMID:15715993
qualifier: acts_upstream_of_or_within
review:
summary: >-
IMP annotation: Gα2 is required for chemotaxis to cAMP at the onset of
multicellular development, and loss-of-function Gα2 mutations block the
developmental/aggregation program.
action: ACCEPT
reason: >-
Chemotaxis toward cAMP is a core biological process mediated by Gα2 and is
strongly supported by the genetics.
supported_by:
- reference_id: PMID:34418534
supporting_text: required for chemotaxis to cAMP during the onset of multicellular development
- reference_id: PMID:15715993
supporting_text: the loss of G alpha2 function results in a
- term:
id: GO:0031152
label: aggregation involved in sorocarp development
evidence_type: IMP
original_reference_id: PMID:15715993
qualifier: acts_upstream_of_or_within
review:
summary: >-
IMP annotation: Gα2 is essential for aggregation and the developmental life
cycle; loss of Gα2 causes failure of cells to enter the developmental
phase. This is the defining Gα2-null phenotype.
action: ACCEPT
reason: >-
Aggregation during sorocarp (fruiting body) development is a core
biological process for Gα2, essential and well established.
supported_by:
- reference_id: PMID:15715993
supporting_text: G alpha2 is essential for the developmental life cycle of Dictyostelium
- reference_id: PMID:34418534
supporting_text: The Dictyostelium Gα2 G protein subunit is required for chemotaxis to cAMP during the onset of multicellular development
- term:
id: GO:0007188
label: adenylate cyclase-modulating G protein-coupled receptor signaling pathway
evidence_type: IDA
original_reference_id: PMID:15563608
qualifier: involved_in
review:
summary: >-
Direct-evidence involvement in cAMP GPCR (adenylate cyclase-modulating)
signaling, from the quantitative single-cell imaging of chemoattractant
receptor activation and G-protein dynamics.
action: ACCEPT
reason: >-
Gα2 transduces cAMP GPCR signaling during gradient sensing, a core process.
supported_by:
- reference_id: PMID:15563608
supporting_text: triggers dissociation of Galpha and Gbetagamma subunits
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with GO
terms
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000117
title: Electronic Gene Ontology annotations created by ARBA machine learning models
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:11264536
title: Receptor-mediated activation of heterotrimeric G-proteins in living cells.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
FRET between Gα2 and Gβγ in living Dictyostelium cells directly demonstrates
receptor-triggered heterotrimer dissociation; supports G-protein activity,
heterotrimeric complex membership and receptor coupling.
- id: PMID:12217653
title: Monitoring receptor-mediated activation of heterotrimeric G-proteins by fluorescence
resonance energy transfer.
findings: []
- id: PMID:15563608
title: Quantitative imaging of single live cells reveals spatiotemporal dynamics
of multistep signaling events of chemoattractant gradient sensing in Dictyostelium.
findings: []
- id: PMID:15715993
title: Loss-of-function mutations identified in the Helical domain of the G protein
alpha-subunit, G alpha2, of Dictyostelium discoideum.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
Loss-of-function screen establishing that Gα2 is essential for the
developmental life cycle; supports the aggregation and chemotaxis core
processes.
- id: PMID:21103944
title: Chemoattractant-mediated Rap1 activation requires GPCR/G proteins.
findings: []
- id: PMID:23576747
title: Dictyostelium Ric8 is a nonreceptor guanine exchange factor for heterotrimeric
G proteins and is important for development and chemotaxis.
findings: []
- id: PMID:24349132
title: A RabGAP regulates life-cycle duration via trimeric G-protein cascades in
Dictyostelium discoideum.
findings: []
- id: PMID:24930026
title: The Dictyostelium discoideum RACK1 orthologue has roles in growth and development.
findings: []
- id: PMID:27044073
title: Heterotrimeric G-protein shuttling via Gip1 extends the dynamic range of
eukaryotic chemotaxis.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
Establishes the cytosolic reserve pool of the heterotrimeric G protein and
Gip1-dependent shuttling to the plasma membrane; supports plasma membrane
and cytosol localization annotations.
- id: PMID:27237792
title: A Gα-Stimulated RapGEF Is a Receptor-Proximal Regulator of Dictyostelium
Chemotaxis.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
Identifies GflB as a Gα2 binding partner and Gα-stimulated Rap1 GEF that
couples the cAMP GPCR to Rap1; primary support for the GEF-adaptor core
function.
- id: PMID:29352733
title: Localization of palmitoylated and activated G protein α-subunit in Dictyostelium
discoideum.
findings: []
- id: PMID:34418534
title: MAPK docking motif in the Dictyostelium Gα2 subunit is required for aggregation
and transcription factor translocation.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
Full text available; the Gα2 amino-terminal D-motif is required for
cAMP-stimulated GtaC transcription-factor nucleocytoplasmic shuttling and
for aggregation; supports the transcription/nuclear-export non-core roles.
- id: PMID:35544746
title: Soil Amoebae Affect Iron and Chromium Reduction through Preferential Predation
between Two Metal-Reducing Bacteria.
findings: []
reference_review:
relevance: LOW
correctness: UNVERIFIED
review_notes: >-
Environmental-microbiology predation study; cached abstract does not
mention Gα2/gpaB, so its support for a Gα2 response-to-bacterium annotation
could not be verified.
- id: PMID:40934557
title: The Ras association domain of DydA as a specific reporter of activated RasG
in Dictyostelium.
findings: []
- id: PMID:42121920
title: Heterotrimeric G Protein-RasGAP Coupling Drives Adaptation During Chemotaxis.
findings: []
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: >-
Shows the RasGAP C2GAP1 directly associates with Gα2 (preferentially the
activated state) as a G-protein effector; supports the C2GAP1 interaction.
- id: PMID:8280098
title: Phospholipase C in Dictyostelium discoideum. Identification of stimulatory
and inhibitory surface receptors and G-proteins.
findings: []
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: >-
Gα2-null (fgd A) abolishes cAMP/GTP-analog-stimulated phospholipase C,
identifying Gα2 as the stimulatory G protein; supports G protein activity
and GTP binding.
- id: PMID:9647646
title: G protein beta subunit-null mutants are impaired in phagocytosis and chemotaxis
due to inappropriate regulation of the actin cytoskeleton.
findings: []
reference_review:
relevance: MEDIUM
correctness: MISCITED
review_notes: >-
This is a Gβ-null study; it explicitly reports that Gα2-null mutants are
NOT impaired in phagocytosis, so it does not support a Gα2 phagocytosis
annotation (the phagocytosis phenotype is Gβ-specific).
core_functions:
- description: >-
Gα2 is the heterotrimeric G-protein alpha subunit that transduces cAMP
chemoattractant signals from the cAR1 GPCR during aggregation. As the
guanine-nucleotide-binding subunit it cycles between an inactive GDP-bound
heterotrimeric state (with Gβγ) and an active GTP-bound state via its
intrinsic GTPase activity, acting as the molecular switch for aggregation-stage
cAMP signaling.
molecular_function:
id: GO:0003925
label: G protein activity
directly_involved_in:
- id: GO:0007188
label: adenylate cyclase-modulating G protein-coupled receptor signaling pathway
- id: GO:0031152
label: aggregation involved in sorocarp development
locations:
- id: GO:0005886
label: plasma membrane
- id: GO:0005829
label: cytosol
in_complex:
id: GO:0005834
label: heterotrimeric G-protein complex
supported_by:
- reference_id: PMID:8280098
supporting_text: mutant fgd A, lacking the G-protein alpha-subunit G alpha 2, showed no stimulation by either cAMP...indicating that G alpha 2 is the stimulatory G-protein
- reference_id: PMID:11264536
supporting_text: The G-protein heterotrimer rapidly dissociated and reassociated upon addition and removal of chemoattractant
- reference_id: PMID:15715993
supporting_text: G alpha2 is essential for the developmental life cycle of Dictyostelium
- description: >-
Activated Gα2 directly couples the cAMP receptor to monomeric G-protein
signaling by binding and stimulating the Rap1-specific guanine nucleotide
exchange factor GflB, functioning as a Gα-stimulated GEF adaptor that balances
Ras and Rap signaling at the leading edge during chemotaxis.
molecular_function:
id: GO:0005091
label: guanyl-nucleotide exchange factor adaptor activity
directly_involved_in:
- id: GO:0006935
label: chemotaxis
locations:
- id: GO:0005886
label: plasma membrane
supported_by:
- reference_id: PMID:27237792
supporting_text: we identify GflB, a Gα2 binding partner that directly couples the Dictyostelium cyclic AMP GPCR to Rap1
- reference_id: PMID:27237792
supporting_text: functions as a Gα-stimulated, Rap1-specific guanine nucleotide exchange factor