sgcA (sGC) is one of the two guanylyl cyclases of Dictyostelium discoideum and provides the great majority of chemoattractant-stimulated cGMP synthesis during cAMP chemotaxis. It is an unusually large (2843 aa, ~315 kDa) cytosolic enzyme whose central pair of class III adenylyl/guanylyl-cyclase catalytic domains is flanked by two large (~1000 aa) N- and C-terminal regions. Despite the "soluble guanylyl cyclase" name it is homologous to mammalian soluble adenylyl cyclase (a class III cyclase) rather than to the metazoan NO-sensitive, heme-containing soluble guanylyl cyclase; its Mg2+/GTP-dependent activity is stimulated by GTPgammaS and inhibited by Ca2+, and there is no evidence for NO or heme regulation. In resting cells the protein is largely cytosolic, and during chemotaxis it translocates to the leading edge, where its N-terminal region binds actin filaments in extending pseudopodia and the enzyme becomes catalytically active upon membrane association. The rapidly diffusing cGMP it produces promotes assembly of myosin II filaments in the cortex and rear of the cell, suppressing lateral pseudopodia and thereby maintaining polarity and directional movement. The sGC protein also has a cGMP-independent activity in which anteriorly localized protein refines and stabilizes pseudopod formation at the leading edge. Loss of the gene reduces chemotactic sensitivity toward cAMP and impairs aggregation, and the protein additionally influences electrotaxis directionality and the timing of intracellular calcium responses.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0000287
magnesium ion binding
|
IEA
GO_REF:0000104 |
KEEP AS NON CORE |
Summary: sgcA is a class III nucleotide cyclase, and these enzymes use a divalent metal (Mg2+ or Mn2+) for two-metal-ion catalysis. Physiological activity is Mg2+/GTP dependent, so magnesium binding by the catalytic domain is biologically real. This is a cofactor requirement supporting the guanylate cyclase activity rather than a standalone core function.
Reason: Magnesium binding is a genuine catalytic cofactor requirement of the cyclase domain (physiological substrate is Mg2+/GTP) but is ancillary to the core guanylate cyclase molecular function.
Supporting Evidence:
PMID:11500361
prevailing Mg 2+ concentration
PMID:11500361
stimulated by GTPγS and inhibited by Ca 2+ ions
|
|
GO:0006182
cGMP biosynthetic process
|
IEA
GO_REF:0000108 |
ACCEPT |
Summary: sgcA is the predominant source of chemoattractant-stimulated cGMP in Dictyostelium; gene disruption reduces guanylyl cyclase activity more than 10-fold. The cGMP biosynthetic process annotation is a direct and accurate consequence of the enzyme's guanylate cyclase activity.
Reason: cGMP biosynthesis is the core biological output of this guanylate cyclase and is directly supported by experimental gene-disruption data.
Supporting Evidence:
PMID:11500361
>10-fold reduction in guanylyl cyclase activity
|
|
GO:0009190
cyclic nucleotide biosynthetic process
|
IEA
GO_REF:0000002 |
KEEP AS NON CORE |
Summary: This is a correct but more general parent of cGMP biosynthetic process. The specific product of sgcA is cGMP, so the more precise cGMP biosynthetic process term better captures the function.
Reason: Accurate but redundant with the more specific cGMP biosynthetic process annotation; retained as a non-core general term.
Supporting Evidence:
PMID:11500361
>10-fold reduction in guanylyl cyclase activity
|
|
GO:0035556
intracellular signal transduction
|
IEA
GO_REF:0000002 |
KEEP AS NON CORE |
Summary: cGMP produced by sgcA acts as an intracellular second messenger during chemotaxis, so participation in intracellular signal transduction is correct. It is a broad term that does not capture the specific chemotactic role.
Reason: Correct high-level process term; retained as non-core because more specific chemotaxis and cGMP-biosynthesis terms better describe the role.
Supporting Evidence:
PMID:16790492
cGMP plays an important role during chemotaxis
|
|
GO:0019722
calcium-mediated signaling
|
IGI
PMID:40295210 Intracellular Calcium Responses to External Calcium Stimuli ... |
KEEP AS NON CORE |
Summary: Genetic analysis shows that gca/sgc-null cells have an altered (slightly delayed) intracellular calcium response to external calcium, and the authors conclude that cGMP participates in calcium homeostasis. This is a modulatory, downstream role rather than a core function of the enzyme.
Reason: sgcA/cGMP modulates the timing of calcium responses but this is an accessory role, not the core guanylate-cyclase function.
Supporting Evidence:
PMID:40295210
gca/sgc-null cells showed a slightly delayed response
PMID:40295210
G proteins, cGMP, and IplA are involved in calcium homeostasis
|
|
GO:0031252
cell leading edge
|
IDA
PMID:19346484 Switching direction in electric-signal-induced cell migratio... |
ACCEPT |
Summary: In migrating cells the sGC protein localizes to the leading-edge pseudopod in an actin-dependent manner, consistent with direct-imaging data in this and other studies. This is a well-supported localization.
Reason: Direct experimental evidence places sGC at the leading-edge pseudopod during directed migration.
Supporting Evidence:
PMID:19346484
components of the GCase- and PI3K-dependent signaling pathways localized at the leading edge of migrating cells during electrotaxis in an actin-dependent manner
|
|
GO:0051602
response to electrical stimulus
|
IGI
PMID:19346484 Switching direction in electric-signal-induced cell migratio... |
KEEP AS NON CORE |
Summary: Genetic modulation of the guanylyl cyclases and the cGMP target GbpC reverses the preferred direction of migration in an electric field (electrotaxis), showing that sgcA acts within the response to an electrical stimulus. This is an accessory role rather than the enzyme's core function.
Reason: sgcA contributes to directional switching during electrotaxis, a specialized downstream behavior, not the core molecular function.
Supporting Evidence:
PMID:19346484
the preferential direction of migration during electrotaxis in Dictyostelium cells can be reversed by genetically modulating both guanylyl cyclases
|
|
GO:0031252
cell leading edge
|
IDA
PMID:29118357 Pumilio-dependent localization of mRNAs at the cell front co... |
ACCEPT |
Summary: The four chemotaxis-pathway proteins, including sGC, and their mRNAs are preferentially enriched at the cell front during migration. This supports leading-edge localization of sgcA.
Reason: Direct-imaging evidence places sGC among the chemotaxis proteins enriched at the leading edge/cell front.
Supporting Evidence:
PMID:29118357
proteins of these four chemotaxis pathways and actin are preferentially enriched at the cell front
|
|
GO:0005829
cytosol
|
IDA
PMID:15601898 Activation of soluble guanylyl cyclase at the leading edge d... |
ACCEPT |
Summary: In resting cells the major fraction of sGC-GFP is cytosolic, with a small cortical fraction. Cytosolic localization is directly observed and is the resting distribution of the enzyme.
Reason: Direct fluorescence imaging shows sGC is predominantly cytosolic in resting cells.
Supporting Evidence:
PMID:15601898
major fraction of the sGC-GFP fusion protein localizes to the cytosol
|
|
GO:1904269
cell leading edge cell cortex
|
IDA
PMID:15601898 Activation of soluble guanylyl cyclase at the leading edge d... |
ACCEPT |
Summary: In a cAMP gradient sGC-GFP relocates to the anterior (leading-edge) cell cortex, where the membrane-associated enzyme is catalytically active. This anterior cortical localization is directly observed.
Reason: Direct imaging shows chemoattractant-induced enrichment of sGC at the anterior cell cortex.
Supporting Evidence:
PMID:15601898
sGC-GFP localizes to the anterior cell cortex
|
|
GO:0004383
guanylate cyclase activity
|
IMP
PMID:11500361 The Dictyostelium homologue of mammalian soluble adenylyl cy... |
ACCEPT |
Summary: Gene disruption of sgcA abolishes most guanylyl cyclase activity (>10-fold reduction) without affecting adenylyl cyclase activity, demonstrating that this protein is a guanylate cyclase. This is the core molecular function.
Reason: Mutant-phenotype evidence directly establishes guanylate cyclase activity as the core molecular function of sgcA.
Supporting Evidence:
PMID:11500361
>10-fold reduction in guanylyl cyclase activity
|
|
GO:0050920
regulation of chemotaxis
|
IGI
PMID:22081140 Dictyostelium chemotaxis: essential Ras activation and acces... |
KEEP AS NON CORE |
Summary: sGC is one of several accessory signalling enzymes that are not required for basal Ras-driven chemotaxis but provide a memory of direction and improved orientation, amplifying sensitivity in shallow gradients. This is a regulatory contribution to chemotaxis.
Reason: Accurate but general regulation-of-chemotaxis role; the specific chemotaxis-to-cAMP annotation better captures the biology.
Supporting Evidence:
PMID:22081140
they provide a memory of direction and improved orientation of the cell
|
|
GO:0043327
chemotaxis to cAMP
|
IGI
PMID:18299345 Four key signaling pathways mediating chemotaxis in Dictyost... |
ACCEPT |
Summary: Genetic screens identify sGC as a key mediator of cAMP chemotaxis. The protein localizes to the leading edge and interacts with actin filaments, while its cGMP product induces myosin filaments in the rear. This directly captures the physiological process sgcA acts within.
Reason: sgcA is a central mediator of chemotaxis to cAMP, providing both leading-edge protein and rear cGMP signals.
Supporting Evidence:
PMID:18299345
this activity is mediated by a soluble guanylyl cyclase
PMID:18299345
cyclic guanosine monophosphate product induces myosin filaments in the rear of the cell
|
|
GO:0006935
chemotaxis
|
IGI
PMID:18073238 The role of cGMP and the rear of the cell in Dictyostelium c... |
KEEP AS NON CORE |
Summary: sGC/cGMP contributes to chemotaxis by maintaining a quiescent rear and efficient pseudopod retraction, which increases directional movement and stable cell streaming. This is a correct but general parent of the more specific chemotaxis-to-cAMP annotation.
Reason: Correct but broad; the specific chemotaxis-to-cAMP term is the more informative core process annotation.
Supporting Evidence:
PMID:18073238
quiescent rear of the cell increases the efficiency of directional movement
|
|
GO:0120320
lateral pseudopodium retraction
|
IGI
PMID:18073238 The role of cGMP and the rear of the cell in Dictyostelium c... |
KEEP AS NON CORE |
Summary: cGMP produced by sGC promotes cortical myosin in the rear, enabling efficient retraction of lateral/rear pseudopodia during the rising flank of the cAMP wave. sgcA acts within this process.
Reason: A specific downstream consequence of cGMP/myosin signalling; accurate but not the core molecular function.
Supporting Evidence:
PMID:18073238
efficiently retract pseudopodia in the rear of the cell during the rising flank of the cAMP wave
|
|
GO:0004383
guanylate cyclase activity
|
IDA
PMID:16790492 Guanylyl cyclase protein and cGMP product independently cont... |
ACCEPT |
Summary: The sGC protein is the predominant guanylyl cyclase producing cGMP during chemotaxis; a point mutation in the catalytic site (sGCDeltacat) abolishes activity, confirming direct guanylate cyclase function. Core molecular function.
Reason: Direct experimental evidence, including a catalytically dead point mutant, establishes guanylate cyclase activity as the core function.
Supporting Evidence:
PMID:16790492
cGMP plays an important role during chemotaxis and is produced predominantly by a soluble guanylyl cyclase
|
|
GO:0006935
chemotaxis
|
IMP
PMID:16790492 Guanylyl cyclase protein and cGMP product independently cont... |
KEEP AS NON CORE |
Summary: gc-null cells have a reduced chemotaxis index (0.43 vs 0.64 for cells expressing wild-type sGC), demonstrating that sgcA is required for full chemotactic efficiency. Correct but general process term.
Reason: Mutant-phenotype support for a general chemotaxis role; the specific chemotaxis-to-cAMP term better captures the core process.
Supporting Evidence:
PMID:16790492
chemotaxis index of gc -null cells of 0.43
|
|
GO:0015629
actin cytoskeleton
|
IDA
PMID:16790492 Guanylyl cyclase protein and cGMP product independently cont... |
ACCEPT |
Summary: The sGC protein associates with actin filaments in pseudopodia via its N-terminal region; this actin association targets the enzyme to the leading edge and underlies its cGMP-independent role in refining pseudopod formation. A directly observed and functionally important localization.
Reason: Direct evidence that sGC colocalizes with/associates with the actin cytoskeleton in pseudopodia, a key aspect of its leading-edge behavior.
Supporting Evidence:
PMID:16790492
sGC protein associates with actin filaments in pseudopodia
|
|
GO:0031033
myosin filament organization
|
IGI
PMID:16790492 Guanylyl cyclase protein and cGMP product independently cont... |
KEEP AS NON CORE |
Summary: cGMP from sGC drives incorporation of myosin into the cell cortex; cGMP-null cells incorporate almost no myosin in the posterior cortex during chemotaxis. sgcA acts upstream of cortical myosin filament organization.
Reason: Genuine downstream effect of cGMP signalling on cortical myosin, but an accessory process rather than the core molecular function.
Supporting Evidence:
PMID:16790492
incorporate almost no myosin in the posterior cell cortex during chemotaxis
|
|
GO:0031252
cell leading edge
|
IDA
PMID:16790492 Guanylyl cyclase protein and cGMP product independently cont... |
ACCEPT |
Summary: The sGC protein is enriched in extending pseudopodia at the leading edge during chemotaxis. This is directly observed and is a core aspect of the enzyme's spatial behavior.
Reason: Direct imaging shows sGC enrichment at the leading edge during chemotaxis.
Supporting Evidence:
PMID:16790492
The sGC protein is enriched in extending pseudopodia at the leading edge of the cell during chemotaxis
|
|
GO:0031037
myosin II filament disassembly
|
TAS
PMID:14710184 Chemotaxis: signalling modules join hands at front and tail. |
KEEP AS NON CORE |
Summary: This review describes the cGMP cascade as regulating myosin filament formation in the posterior of the cell to inhibit lateral pseudopodia. Because the cascade primarily promotes cortical myosin II assembly, the disassembly direction is debatable; the annotation nonetheless correctly places sgcA within myosin II filament turnover, a downstream process.
Reason: TAS from a secondary review; sgcA/cGMP acts within cortical myosin II filament dynamics (the cascade chiefly promotes filament formation), an accessory role rather than the core function.
Supporting Evidence:
PMID:14710184
regulates myosin filament formation in the posterior of the cell
|
|
GO:0120320
lateral pseudopodium retraction
|
TAS
PMID:14710184 Chemotaxis: signalling modules join hands at front and tail. |
KEEP AS NON CORE |
Summary: The cGMP-signalling cascade regulates posterior myosin filament formation and thereby inhibits the formation of lateral pseudopodia that would misdirect the cell. sgcA acts within this process.
Reason: Accurate downstream role in suppressing lateral pseudopodia via cGMP; accessory to the core guanylate cyclase function.
Supporting Evidence:
PMID:14710184
inhibiting the formation of lateral pseudopodia
|
id: Q551V8
gene_symbol: sgcA
product_type: PROTEIN
status: COMPLETE
taxon:
id: NCBITaxon:44689
label: Dictyostelium discoideum
description: sgcA (sGC) is one of the two guanylyl cyclases of Dictyostelium
discoideum and provides the great majority of chemoattractant-stimulated cGMP
synthesis during cAMP chemotaxis. It is an unusually large (2843 aa, ~315 kDa)
cytosolic enzyme whose central pair of class III adenylyl/guanylyl-cyclase
catalytic domains is flanked by two large (~1000 aa) N- and C-terminal regions.
Despite the "soluble guanylyl cyclase" name it is homologous to mammalian
soluble adenylyl cyclase (a class III cyclase) rather than to the metazoan
NO-sensitive, heme-containing soluble guanylyl cyclase; its Mg2+/GTP-dependent
activity is stimulated by GTPgammaS and inhibited by Ca2+, and there is no
evidence for NO or heme regulation. In resting cells the protein is largely
cytosolic, and during chemotaxis it translocates to the leading edge, where its
N-terminal region binds actin filaments in extending pseudopodia and the enzyme
becomes catalytically active upon membrane association. The rapidly diffusing
cGMP it produces promotes assembly of myosin II filaments in the cortex and rear
of the cell, suppressing lateral pseudopodia and thereby maintaining polarity
and directional movement. The sGC protein also has a cGMP-independent activity in
which anteriorly localized protein refines and stabilizes pseudopod formation at
the leading edge. Loss of the gene reduces chemotactic sensitivity toward cAMP and
impairs aggregation, and the protein additionally influences electrotaxis
directionality and the timing of intracellular calcium responses.
existing_annotations:
- term:
id: GO:0000287
label: magnesium ion binding
evidence_type: IEA
original_reference_id: GO_REF:0000104
qualifier: enables
review:
summary: sgcA is a class III nucleotide cyclase, and these enzymes use a
divalent metal (Mg2+ or Mn2+) for two-metal-ion catalysis. Physiological
activity is Mg2+/GTP dependent, so magnesium binding by the catalytic
domain is biologically real. This is a cofactor requirement supporting the
guanylate cyclase activity rather than a standalone core function.
action: KEEP_AS_NON_CORE
reason: Magnesium binding is a genuine catalytic cofactor requirement of the
cyclase domain (physiological substrate is Mg2+/GTP) but is ancillary to
the core guanylate cyclase molecular function.
supported_by:
- reference_id: PMID:11500361
supporting_text: prevailing Mg 2+ concentration
- reference_id: PMID:11500361
supporting_text: stimulated by GTPγS and inhibited by Ca 2+ ions
- term:
id: GO:0006182
label: cGMP biosynthetic process
evidence_type: IEA
original_reference_id: GO_REF:0000108
qualifier: involved_in
review:
summary: sgcA is the predominant source of chemoattractant-stimulated cGMP in
Dictyostelium; gene disruption reduces guanylyl cyclase activity more than
10-fold. The cGMP biosynthetic process annotation is a direct and accurate
consequence of the enzyme's guanylate cyclase activity.
action: ACCEPT
reason: cGMP biosynthesis is the core biological output of this guanylate
cyclase and is directly supported by experimental gene-disruption data.
supported_by:
- reference_id: PMID:11500361
supporting_text: '>10-fold reduction in guanylyl cyclase activity'
- term:
id: GO:0009190
label: cyclic nucleotide biosynthetic process
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: involved_in
review:
summary: This is a correct but more general parent of cGMP biosynthetic
process. The specific product of sgcA is cGMP, so the more precise cGMP
biosynthetic process term better captures the function.
action: KEEP_AS_NON_CORE
reason: Accurate but redundant with the more specific cGMP biosynthetic
process annotation; retained as a non-core general term.
supported_by:
- reference_id: PMID:11500361
supporting_text: '>10-fold reduction in guanylyl cyclase activity'
- term:
id: GO:0035556
label: intracellular signal transduction
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: involved_in
review:
summary: cGMP produced by sgcA acts as an intracellular second messenger
during chemotaxis, so participation in intracellular signal transduction is
correct. It is a broad term that does not capture the specific chemotactic
role.
action: KEEP_AS_NON_CORE
reason: Correct high-level process term; retained as non-core because more
specific chemotaxis and cGMP-biosynthesis terms better describe the role.
supported_by:
- reference_id: PMID:16790492
supporting_text: cGMP plays an important role during chemotaxis
- term:
id: GO:0019722
label: calcium-mediated signaling
evidence_type: IGI
original_reference_id: PMID:40295210
qualifier: acts_upstream_of_or_within
review:
summary: Genetic analysis shows that gca/sgc-null cells have an altered
(slightly delayed) intracellular calcium response to external calcium, and
the authors conclude that cGMP participates in calcium homeostasis. This is
a modulatory, downstream role rather than a core function of the enzyme.
action: KEEP_AS_NON_CORE
reason: sgcA/cGMP modulates the timing of calcium responses but this is an
accessory role, not the core guanylate-cyclase function.
supported_by:
- reference_id: PMID:40295210
supporting_text: gca/sgc-null cells showed a slightly delayed response
- reference_id: PMID:40295210
supporting_text: G proteins, cGMP, and IplA are involved in calcium homeostasis
- term:
id: GO:0031252
label: cell leading edge
evidence_type: IDA
original_reference_id: PMID:19346484
qualifier: located_in
review:
summary: In migrating cells the sGC protein localizes to the leading-edge
pseudopod in an actin-dependent manner, consistent with direct-imaging data
in this and other studies. This is a well-supported localization.
action: ACCEPT
reason: Direct experimental evidence places sGC at the leading-edge pseudopod
during directed migration.
supported_by:
- reference_id: PMID:19346484
supporting_text: components of the GCase- and PI3K-dependent signaling
pathways localized at the leading edge of migrating cells during
electrotaxis in an actin-dependent manner
- term:
id: GO:0051602
label: response to electrical stimulus
evidence_type: IGI
original_reference_id: PMID:19346484
qualifier: acts_upstream_of_or_within
review:
summary: Genetic modulation of the guanylyl cyclases and the cGMP target
GbpC reverses the preferred direction of migration in an electric field
(electrotaxis), showing that sgcA acts within the response to an electrical
stimulus. This is an accessory role rather than the enzyme's core function.
action: KEEP_AS_NON_CORE
reason: sgcA contributes to directional switching during electrotaxis, a
specialized downstream behavior, not the core molecular function.
supported_by:
- reference_id: PMID:19346484
supporting_text: the preferential direction of migration during
electrotaxis in Dictyostelium cells can be reversed by genetically
modulating both guanylyl cyclases
- term:
id: GO:0031252
label: cell leading edge
evidence_type: IDA
original_reference_id: PMID:29118357
qualifier: located_in
review:
summary: The four chemotaxis-pathway proteins, including sGC, and their mRNAs
are preferentially enriched at the cell front during migration. This
supports leading-edge localization of sgcA.
action: ACCEPT
reason: Direct-imaging evidence places sGC among the chemotaxis proteins
enriched at the leading edge/cell front.
supported_by:
- reference_id: PMID:29118357
supporting_text: proteins of these four chemotaxis pathways and actin are
preferentially enriched at the cell front
- term:
id: GO:0005829
label: cytosol
evidence_type: IDA
original_reference_id: PMID:15601898
qualifier: located_in
review:
summary: In resting cells the major fraction of sGC-GFP is cytosolic, with a
small cortical fraction. Cytosolic localization is directly observed and is
the resting distribution of the enzyme.
action: ACCEPT
reason: Direct fluorescence imaging shows sGC is predominantly cytosolic in
resting cells.
supported_by:
- reference_id: PMID:15601898
supporting_text: major fraction of the sGC-GFP fusion protein localizes to
the cytosol
- term:
id: GO:1904269
label: cell leading edge cell cortex
evidence_type: IDA
original_reference_id: PMID:15601898
qualifier: located_in
review:
summary: In a cAMP gradient sGC-GFP relocates to the anterior (leading-edge)
cell cortex, where the membrane-associated enzyme is catalytically active.
This anterior cortical localization is directly observed.
action: ACCEPT
reason: Direct imaging shows chemoattractant-induced enrichment of sGC at the
anterior cell cortex.
supported_by:
- reference_id: PMID:15601898
supporting_text: sGC-GFP localizes to the anterior cell cortex
- term:
id: GO:0004383
label: guanylate cyclase activity
evidence_type: IMP
original_reference_id: PMID:11500361
qualifier: enables
review:
summary: Gene disruption of sgcA abolishes most guanylyl cyclase activity
(>10-fold reduction) without affecting adenylyl cyclase activity,
demonstrating that this protein is a guanylate cyclase. This is the core
molecular function.
action: ACCEPT
reason: Mutant-phenotype evidence directly establishes guanylate cyclase
activity as the core molecular function of sgcA.
supported_by:
- reference_id: PMID:11500361
supporting_text: '>10-fold reduction in guanylyl cyclase activity'
- term:
id: GO:0050920
label: regulation of chemotaxis
evidence_type: IGI
original_reference_id: PMID:22081140
qualifier: acts_upstream_of_or_within
review:
summary: sGC is one of several accessory signalling enzymes that are not
required for basal Ras-driven chemotaxis but provide a memory of direction
and improved orientation, amplifying sensitivity in shallow gradients. This
is a regulatory contribution to chemotaxis.
action: KEEP_AS_NON_CORE
reason: Accurate but general regulation-of-chemotaxis role; the specific
chemotaxis-to-cAMP annotation better captures the biology.
supported_by:
- reference_id: PMID:22081140
supporting_text: they provide a memory of direction and improved
orientation of the cell
- term:
id: GO:0043327
label: chemotaxis to cAMP
evidence_type: IGI
original_reference_id: PMID:18299345
qualifier: acts_upstream_of_or_within
review:
summary: Genetic screens identify sGC as a key mediator of cAMP chemotaxis.
The protein localizes to the leading edge and interacts with actin
filaments, while its cGMP product induces myosin filaments in the rear.
This directly captures the physiological process sgcA acts within.
action: ACCEPT
reason: sgcA is a central mediator of chemotaxis to cAMP, providing both
leading-edge protein and rear cGMP signals.
supported_by:
- reference_id: PMID:18299345
supporting_text: this activity is mediated by a soluble guanylyl cyclase
- reference_id: PMID:18299345
supporting_text: cyclic guanosine monophosphate product induces myosin
filaments in the rear of the cell
- term:
id: GO:0006935
label: chemotaxis
evidence_type: IGI
original_reference_id: PMID:18073238
qualifier: acts_upstream_of_or_within
review:
summary: sGC/cGMP contributes to chemotaxis by maintaining a quiescent rear
and efficient pseudopod retraction, which increases directional movement
and stable cell streaming. This is a correct but general parent of the more
specific chemotaxis-to-cAMP annotation.
action: KEEP_AS_NON_CORE
reason: Correct but broad; the specific chemotaxis-to-cAMP term is the more
informative core process annotation.
supported_by:
- reference_id: PMID:18073238
supporting_text: quiescent rear of the cell increases the efficiency of
directional movement
- term:
id: GO:0120320
label: lateral pseudopodium retraction
evidence_type: IGI
original_reference_id: PMID:18073238
qualifier: acts_upstream_of_or_within
review:
summary: cGMP produced by sGC promotes cortical myosin in the rear, enabling
efficient retraction of lateral/rear pseudopodia during the rising flank of
the cAMP wave. sgcA acts within this process.
action: KEEP_AS_NON_CORE
reason: A specific downstream consequence of cGMP/myosin signalling; accurate
but not the core molecular function.
supported_by:
- reference_id: PMID:18073238
supporting_text: efficiently retract pseudopodia in the rear of the cell
during the rising flank of the cAMP wave
- term:
id: GO:0004383
label: guanylate cyclase activity
evidence_type: IDA
original_reference_id: PMID:16790492
qualifier: enables
review:
summary: The sGC protein is the predominant guanylyl cyclase producing cGMP
during chemotaxis; a point mutation in the catalytic site (sGCDeltacat)
abolishes activity, confirming direct guanylate cyclase function. Core
molecular function.
action: ACCEPT
reason: Direct experimental evidence, including a catalytically dead point
mutant, establishes guanylate cyclase activity as the core function.
supported_by:
- reference_id: PMID:16790492
supporting_text: cGMP plays an important role during chemotaxis and is
produced predominantly by a soluble guanylyl cyclase
- term:
id: GO:0006935
label: chemotaxis
evidence_type: IMP
original_reference_id: PMID:16790492
qualifier: acts_upstream_of_or_within
review:
summary: gc-null cells have a reduced chemotaxis index (0.43 vs 0.64 for
cells expressing wild-type sGC), demonstrating that sgcA is required for
full chemotactic efficiency. Correct but general process term.
action: KEEP_AS_NON_CORE
reason: Mutant-phenotype support for a general chemotaxis role; the specific
chemotaxis-to-cAMP term better captures the core process.
supported_by:
- reference_id: PMID:16790492
supporting_text: chemotaxis index of gc -null cells of 0.43
- term:
id: GO:0015629
label: actin cytoskeleton
evidence_type: IDA
original_reference_id: PMID:16790492
qualifier: colocalizes_with
review:
summary: The sGC protein associates with actin filaments in pseudopodia via
its N-terminal region; this actin association targets the enzyme to the
leading edge and underlies its cGMP-independent role in refining pseudopod
formation. A directly observed and functionally important localization.
action: ACCEPT
reason: Direct evidence that sGC colocalizes with/associates with the actin
cytoskeleton in pseudopodia, a key aspect of its leading-edge behavior.
supported_by:
- reference_id: PMID:16790492
supporting_text: sGC protein associates with actin filaments in pseudopodia
- term:
id: GO:0031033
label: myosin filament organization
evidence_type: IGI
original_reference_id: PMID:16790492
qualifier: acts_upstream_of_or_within
review:
summary: cGMP from sGC drives incorporation of myosin into the cell cortex;
cGMP-null cells incorporate almost no myosin in the posterior cortex during
chemotaxis. sgcA acts upstream of cortical myosin filament organization.
action: KEEP_AS_NON_CORE
reason: Genuine downstream effect of cGMP signalling on cortical myosin, but
an accessory process rather than the core molecular function.
supported_by:
- reference_id: PMID:16790492
supporting_text: incorporate almost no myosin in the posterior cell cortex
during chemotaxis
- term:
id: GO:0031252
label: cell leading edge
evidence_type: IDA
original_reference_id: PMID:16790492
qualifier: located_in
review:
summary: The sGC protein is enriched in extending pseudopodia at the leading
edge during chemotaxis. This is directly observed and is a core aspect of
the enzyme's spatial behavior.
action: ACCEPT
reason: Direct imaging shows sGC enrichment at the leading edge during
chemotaxis.
supported_by:
- reference_id: PMID:16790492
supporting_text: The sGC protein is enriched in extending pseudopodia at
the leading edge of the cell during chemotaxis
- term:
id: GO:0031037
label: myosin II filament disassembly
evidence_type: TAS
original_reference_id: PMID:14710184
qualifier: acts_upstream_of_or_within
review:
summary: This review describes the cGMP cascade as regulating myosin filament
formation in the posterior of the cell to inhibit lateral pseudopodia.
Because the cascade primarily promotes cortical myosin II assembly, the
disassembly direction is debatable; the annotation nonetheless correctly
places sgcA within myosin II filament turnover, a downstream process.
action: KEEP_AS_NON_CORE
reason: TAS from a secondary review; sgcA/cGMP acts within cortical myosin II
filament dynamics (the cascade chiefly promotes filament formation), an
accessory role rather than the core function.
supported_by:
- reference_id: PMID:14710184
supporting_text: regulates myosin filament formation in the posterior of
the cell
- term:
id: GO:0120320
label: lateral pseudopodium retraction
evidence_type: TAS
original_reference_id: PMID:14710184
qualifier: acts_upstream_of_or_within
review:
summary: The cGMP-signalling cascade regulates posterior myosin filament
formation and thereby inhibits the formation of lateral pseudopodia that
would misdirect the cell. sgcA acts within this process.
action: KEEP_AS_NON_CORE
reason: Accurate downstream role in suppressing lateral pseudopodia via cGMP;
accessory to the core guanylate cyclase function.
supported_by:
- reference_id: PMID:14710184
supporting_text: inhibiting the formation of lateral pseudopodia
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with GO
terms
findings: []
- id: GO_REF:0000104
title: Electronic Gene Ontology annotations created by transferring manual GO annotations
between related proteins based on shared sequence features
findings: []
- id: GO_REF:0000108
title: Automatic assignment of GO terms using logical inference, based on on inter-ontology
links
findings: []
- id: PMID:11500361
title: The Dictyostelium homologue of mammalian soluble adenylyl cyclase encodes
a guanylyl cyclase.
findings:
- statement: sgcA (sGC) is a class III cyclase homologous to mammalian soluble
adenylyl cyclase, and its disruption reduces guanylyl cyclase activity more
than 10-fold without affecting adenylyl cyclase activity.
supporting_text: '>10-fold reduction in guanylyl cyclase activity'
- statement: Physiological Mg2+-dependent sGC activity is stimulated by GTPgammaS
and inhibited by Ca2+, indicating regulation distinct from the NO/heme
metazoan soluble guanylyl cyclase.
supporting_text: stimulated by GTPγS and inhibited by Ca 2+ ions
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Primary paper identifying and disrupting sgcA; establishes it as
the predominant guanylyl cyclase and a class III (sAC-homologous) enzyme, not
a NO-sensitive heme cyclase.
- id: PMID:14710184
title: 'Chemotaxis: signalling modules join hands at front and tail.'
findings:
- statement: The cGMP-signalling cascade regulates myosin filament formation in
the posterior of the cell, inhibiting lateral pseudopodia that could
misdirect the cell.
supporting_text: regulates myosin filament formation in the posterior of the cell
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Review that frames the front/back modular model; supports the
cGMP-myosin-pseudopod suppression role but is a secondary source.
- id: PMID:15601898
title: Activation of soluble guanylyl cyclase at the leading edge during Dictyostelium
chemotaxis.
findings:
- statement: In resting cells sGC-GFP is mainly cytosolic, and in a cAMP gradient
it relocates to the anterior cell cortex where the membrane-associated enzyme
becomes active.
supporting_text: major fraction of the sGC-GFP fusion protein localizes to the cytosol
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Establishes cytosolic resting distribution and chemoattractant-induced
anterior cortical activation; cached record is abstract-only (full_text_available
false) but the abstract states these localizations directly.
- id: PMID:16790492
title: Guanylyl cyclase protein and cGMP product independently control front and
back of chemotaxing Dictyostelium cells.
findings:
- statement: The sGC protein is enriched at the leading edge and associates with
actin filaments in pseudopodia, while its cGMP product drives cortical myosin
in the rear; the two functions are separable.
supporting_text: The sGC protein is enriched in extending pseudopodia at the
leading edge of the cell during chemotaxis
- statement: sGC associates with actin filaments in pseudopodia.
supporting_text: sGC protein associates with actin filaments in pseudopodia
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Uncouples catalytic activity (sGCDeltacat) from leading-edge
localization (sGCDeltaN); the strongest evidence for the dual, cGMP-dependent
and cGMP-independent, roles of sgcA.
- id: PMID:18073238
title: The role of cGMP and the rear of the cell in Dictyostelium chemotaxis and
cell streaming.
findings:
- statement: A quiescent, cGMP-dependent rear with efficient pseudopod retraction
increases directional movement and stable cell streaming.
supporting_text: quiescent rear of the cell increases the efficiency of directional
movement
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Abstract-only cache; supports the rear/cGMP role in chemotaxis and
pseudopod retraction.
- id: PMID:18299345
title: Four key signaling pathways mediating chemotaxis in Dictyostelium discoideum.
findings:
- statement: A soluble guanylyl cyclase mediates chemotaxis by localizing to the
leading edge (protein) and inducing rear myosin filaments (cGMP product).
supporting_text: cyclic guanosine monophosphate product induces myosin filaments
in the rear of the cell
reference_review:
relevance: HIGH
correctness: VERIFIED
review_notes: Genetic identification of sGC as one of four key chemotaxis
pathways; supports chemotaxis-to-cAMP core process.
- id: PMID:19346484
title: Switching direction in electric-signal-induced cell migration by cyclic guanosine
monophosphate and phosphatidylinositol signaling.
findings:
- statement: sGC and its cGMP product control directional switching in
electrotaxis, with sGC localizing to the leading-edge pseudopod in an
actin-dependent manner.
supporting_text: components of the GCase- and PI3K-dependent signaling pathways
localized at the leading edge of migrating cells during electrotaxis in an
actin-dependent manner
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Supports both leading-edge localization and an accessory role in
electrotaxis directional switching.
- id: PMID:22081140
title: 'Dictyostelium chemotaxis: essential Ras activation and accessory signalling
pathways for amplification.'
findings:
- statement: sGC is an accessory signalling enzyme that is dispensable for basal
Ras-driven chemotaxis but provides a memory of direction and improved
orientation, amplifying sensitivity in shallow gradients.
supporting_text: they provide a memory of direction and improved orientation of
the cell
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Places sGC among accessory amplification pathways rather than the
essential Ras module; supports regulation-of-chemotaxis annotation.
- id: PMID:29118357
title: Pumilio-dependent localization of mRNAs at the cell front coordinates multiple
pathways required for chemotaxis.
findings:
- statement: The four chemotaxis-pathway proteins (including sGC) and their mRNAs
are preferentially enriched at the cell front during dynamic migration.
supporting_text: proteins of these four chemotaxis pathways and actin are
preferentially enriched at the cell front
reference_review:
relevance: MEDIUM
correctness: VERIFIED
review_notes: Supports leading-edge/cell-front enrichment of sGC among the
coordinated chemotaxis pathways.
- id: PMID:40295210
title: Intracellular Calcium Responses to External Calcium Stimuli in Dictyostelium.
findings:
- statement: gca/sgc-null cells show an altered (slightly delayed) intracellular
calcium response to external calcium, and cGMP is implicated in calcium
homeostasis.
supporting_text: gca/sgc-null cells showed a slightly delayed response
reference_review:
relevance: LOW
correctness: VERIFIED
review_notes: Supports a modulatory role of cGMP/sgcA in the timing of calcium
responses; peripheral to the core function.
core_functions:
- description: sgcA is the principal soluble (class III, sAC-homologous) guanylyl
cyclase of Dictyostelium, synthesizing the chemoattractant-induced cGMP burst
from Mg2+/GTP. The enzyme is largely cytosolic at rest and becomes active upon
membrane/leading-edge association; the diffusible cGMP promotes cortical myosin
II assembly that suppresses lateral pseudopodia and maintains polarity during
cAMP chemotaxis.
molecular_function:
id: GO:0004383
label: guanylate cyclase activity
directly_involved_in:
- id: GO:0043327
label: chemotaxis to cAMP
locations:
- id: GO:0005829
label: cytosol
- id: GO:0031252
label: cell leading edge
- id: GO:1904269
label: cell leading edge cell cortex
supported_by:
- reference_id: PMID:11500361
supporting_text: '>10-fold reduction in guanylyl cyclase activity'
- reference_id: PMID:16790492
supporting_text: cGMP plays an important role during chemotaxis and is produced
predominantly by a soluble guanylyl cyclase
- reference_id: PMID:15601898
supporting_text: sGC-GFP localizes to the anterior cell cortex
- description: Independently of its catalytic product, the sGC protein acts as an
actin-associated, leading-edge scaffold; its N-terminal region binds actin
filaments in extending pseudopodia, localizing the protein to the cell front
where it refines and stabilizes pseudopod formation.
molecular_function:
id: GO:0004383
label: guanylate cyclase activity
locations:
- id: GO:0015629
label: actin cytoskeleton
- id: GO:0031252
label: cell leading edge
supported_by:
- reference_id: PMID:16790492
supporting_text: sGC protein associates with actin filaments in pseudopodia
- reference_id: PMID:16790492
supporting_text: The sGC protein is enriched in extending pseudopodia at the
leading edge of the cell during chemotaxis