cpx

UniProt ID: Q95PA1
Organism: Doryteuthis pealeii
Review Status: IN PROGRESS
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Gene Description

Complexin (synaphin) is a cytosolic protein that acts as a dual regulator of synaptic vesicle exocytosis at the squid giant synapse: it both clamps SNARE complexes to prevent spontaneous fusion and facilitates rapid Ca2+-triggered synchronous release. It binds preferentially to syntaxin within the assembled SNARE core complex (containing syntaxin-1, synaptobrevin, and SNAP-25), and promotes SNARE complex oligomerization into higher-order structures that form a scaffold for efficient, regulated vesicle fusion. The crystal structure of squid complexin bound to the SNARE complex (2.95 A resolution; PMID:12004067) reveals an alpha-helical segment (residues 25-98) that binds in antiparallel fashion to the SNARE four-helix bundle, contacting syntaxin and synaptobrevin around the ionic zero layer. The N-terminal tip (~residues 1-26) is critical for activating fast Ca2+-triggered fusion but dispensable for clamping. The central and accessory helices mediate the inhibitory clamp function, stabilizing a partially zippered SNARE state. The C-terminal tail is amphipathic, enabling membrane association via curvature sensing (non-CAAX variant, unlike retinal complexin-3/4 isoforms). Complexin cooperates with synaptotagmin-1 to synergistically clamp SNARE assembly, and Ca2+-bound synaptotagmin releases the clamp to trigger synchronous neurotransmitter release. In mammals, complexin knockout causes 3-4 fold increase in spontaneous miniature release and abolishes fast synchronous release. Human CPLX1 loss-of-function mutations cause infantile epileptic encephalopathies (SNAREopathies).

Existing Annotations Review

GO Term Evidence Action Reason
GO:0000149 SNARE binding
IEA
GO_REF:0000118
ACCEPT
Summary: TreeGrafter-predicted SNARE binding is strongly supported by direct experimental evidence from the squid giant synapse. Tokumaru et al. (2001) demonstrated that complexin/synaphin preferentially binds to syntaxin within the SNARE complex [PMID:11239399]. Bracher et al. (2002) resolved the crystal structure of squid complexin bound to the SNARE core complex at 2.95 angstrom resolution, showing detailed molecular contacts [PMID:12004067]. SNARE binding is the core molecular function of complexin. The term is appropriate, though syntaxin binding (GO:0019905) would also be valid as a more specific child term given the preferential syntaxin interaction.
Reason: SNARE binding is the defining molecular function of complexin, demonstrated directly in this species by both biochemical and structural studies. The term is at the right level of specificity since complexin binds the assembled SNARE complex as a whole, not just syntaxin alone.
Supporting Evidence:
PMID:11239399
Synaphin/complexin is a cytosolic protein that preferentially binds to syntaxin within the SNARE complex.
PMID:12004067
A helical segment of complexin binds in anti-parallel fashion to the four-helix bundle of the core SNARE complex and interacts at its C terminus with syntaxin and synaptobrevin around the ionic zero layer of the SNARE complex.
GO:0005829 cytosol
IEA
GO_REF:0000044
ACCEPT
Summary: Cytosol localization is supported by UniProt subcellular location annotation and by direct experimental evidence. Tokumaru et al. (2001) identified complexin as a cytosolic protein in squid optic lobe [PMID:11239399]. The UniProt record confirms cytoplasm/cytosol localization with experimental evidence (ECO:0000269|PubMed:11239399).
Reason: Cytosol localization is experimentally confirmed in this species. Complexin is primarily a soluble cytosolic protein that associates with the SNARE complex at the membrane.
Supporting Evidence:
PMID:11239399
Synaphin/complexin is a cytosolic protein that preferentially binds to syntaxin within the SNARE complex.
GO:0006836 neurotransmitter transport
IEA
GO_REF:0000002
MODIFY
Summary: InterPro2GO mapping from the Synaphin domain (IPR008849) to neurotransmitter transport. This is an overly broad and somewhat imprecise annotation. Complexin does not function as a neurotransmitter transporter; rather, it regulates the exocytotic release of neurotransmitter-containing synaptic vesicles. The more accurate biological process terms are synaptic vesicle exocytosis (GO:0016079) and positive regulation of synaptic vesicle exocytosis (GO:2000302), both of which are already annotated or proposed.
Reason: Neurotransmitter transport implies a direct role in moving neurotransmitter molecules, which is misleading. Complexin regulates exocytosis of neurotransmitter-containing synaptic vesicles at a late prefusion step. The correct process is regulation of neurotransmitter secretion or synaptic vesicle exocytosis, not transport per se.
Supporting Evidence:
PMID:11239399
Injection of this peptide into squid giant presynaptic terminals inhibited neurotransmitter release at a late prefusion step of synaptic vesicle exocytosis.
GO:0016020 membrane
IEA
GO_REF:0000044
ACCEPT
Summary: Membrane association is supported by UniProt annotation indicating lipid-anchor (farnesylation) at Cys149. The UniProt record lists membrane localization via lipid-anchor. While complexin is primarily cytosolic, the C-terminal farnesyl modification enables membrane association. This is a very broad CC term but is not incorrect.
Reason: Complexin is farnesylated at Cys149 (S-farnesyl cysteine), providing a lipid anchor for membrane association. The membrane annotation is consistent with this post-translational modification. Although a more specific membrane compartment (e.g. presynaptic membrane) would be preferable, the broad membrane term is acceptable given only the farnesylation evidence without specific membrane subcompartment localization data.
GO:0016079 synaptic vesicle exocytosis
IEA
GO_REF:0000118
MODIFY
Summary: TreeGrafter-predicted involvement in synaptic vesicle exocytosis is strongly supported by experimental evidence from the squid giant synapse. Tokumaru et al. (2001) showed that injection of an inhibitory complexin peptide into squid giant presynaptic terminals blocked neurotransmitter release at a late prefusion step of synaptic vesicle exocytosis [PMID:11239399]. Bracher et al. (2002) proposed that complexin is part of a multiprotein fusion machinery that regulates vesicle fusion at a late pre-fusion stage [PMID:12004067]. However, complexin is a regulator of this process rather than a direct participant; a more precise annotation would be positive regulation of synaptic vesicle exocytosis (GO:2000302).
Reason: While complexin is clearly involved in the synaptic vesicle exocytosis pathway, it functions as a positive regulator rather than a core component of the fusion machinery itself. The term GO:2000302 (positive regulation of synaptic vesicle exocytosis) more accurately captures the regulatory role demonstrated by the antibody and peptide inhibition experiments.
Supporting Evidence:
PMID:11239399
Injection of this peptide into squid giant presynaptic terminals inhibited neurotransmitter release at a late prefusion step of synaptic vesicle exocytosis.
PMID:12004067
We propose that this structure is part of a multiprotein fusion machinery that regulates vesicle fusion at a late pre-fusion stage.
GO:0031201 SNARE complex
IEA
GO_REF:0000118
MARK AS OVER ANNOTATED
Summary: TreeGrafter-predicted localization to the SNARE complex. Complexin binds the assembled SNARE complex but is not a core subunit of it. The SNARE complex consists of syntaxin-1, synaptobrevin, and SNAP-25; complexin is an accessory regulatory protein that binds to the outside of the assembled four-helix bundle. Bracher et al. (2002) solved the crystal structure showing complexin bound to the SNARE complex surface [PMID:12004067]. Being a binding partner rather than a subunit, the part_of relationship implied by this CC annotation is questionable.
Reason: Complexin is not a core subunit of the SNARE complex; it binds to the exterior surface of the assembled SNARE four-helix bundle as an accessory regulatory protein. The part_of qualifier used in the GOA annotation implies complexin is a structural component of the SNARE complex, which is inaccurate. The SNARE binding MF annotation (GO:0000149) already captures this interaction appropriately.
Supporting Evidence:
PMID:12004067
A helical segment of complexin binds in anti-parallel fashion to the four-helix bundle of the core SNARE complex and interacts at its C terminus with syntaxin and synaptobrevin around the ionic zero layer of the SNARE complex.
PMID:11239399
Synaphin/complexin is a cytosolic protein that preferentially binds to syntaxin within the SNARE complex.
GO:0043195 terminal bouton
IEA
GO_REF:0000118
ACCEPT
Summary: TreeGrafter-predicted localization to terminal bouton. Tokumaru et al. (2001) performed experiments by injecting reagents into squid giant presynaptic terminals, confirming that complexin functions at synaptic terminals [PMID:11239399]. While the squid giant synapse is anatomically distinct from a typical bouton, the general concept of presynaptic terminal localization is supported. This annotation is reasonable for a phylogenetically inferred term.
Reason: Terminal bouton localization is consistent with the known function of complexin at presynaptic terminals. The squid giant synapse experiments directly demonstrate complexin activity at the presynaptic terminal. While the squid giant synapse is not a classical bouton, the TreeGrafter inference from mammalian complexin orthologs is phylogenetically sound.
Supporting Evidence:
PMID:11239399
Injection of this peptide into squid giant presynaptic terminals inhibited neurotransmitter release at a late prefusion step of synaptic vesicle exocytosis.
GO:0046928 regulation of neurotransmitter secretion
IEA
GO_REF:0000118
ACCEPT
Summary: TreeGrafter-predicted involvement in regulation of neurotransmitter secretion. This is well supported by experimental evidence. Tokumaru et al. (2001) demonstrated that complexin is essential for neurotransmitter release at the squid giant synapse, and that blocking complexin-syntaxin interaction inhibits neurotransmitter release [PMID:11239399]. This term is acceptable but slightly less specific than positive regulation of synaptic vesicle exocytosis (GO:2000302), which better captures the mechanism.
Reason: Regulation of neurotransmitter secretion is an accurate annotation for complexin. While GO:2000302 (positive regulation of synaptic vesicle exocytosis) is more mechanistically precise, this broader regulatory term is also correct and captures the physiological outcome. Keeping both provides complementary granularity.
Supporting Evidence:
PMID:11239399
Injection of this peptide into squid giant presynaptic terminals inhibited neurotransmitter release at a late prefusion step of synaptic vesicle exocytosis.
GO:2000302 positive regulation of synaptic vesicle exocytosis
IDA
PMID:11239399
SNARE complex oligomerization by synaphin/complexin is essen...
NEW
Summary: Proposed new annotation based on direct experimental evidence from the squid giant synapse. Tokumaru et al. (2001) demonstrated that complexin positively regulates synaptic vesicle exocytosis: blocking complexin function with antibodies or inhibitory peptides inhibited neurotransmitter release at a late prefusion step [PMID:11239399]. UniProt also annotates this protein as positively regulating a late step in synaptic vesicle exocytosis. This is the most precise biological process term for complexin function.
Reason: This term precisely captures the experimentally demonstrated positive regulatory role of complexin in synaptic vesicle exocytosis, which is the core biological function of this protein. It is more specific than both GO:0016079 (synaptic vesicle exocytosis) and GO:0046928 (regulation of neurotransmitter secretion).
Supporting Evidence:
PMID:11239399
SNARE complex oligomerization by synaphin/complexin is essential for synaptic vesicle exocytosis.
PMID:11239399
Injection of this peptide into squid giant presynaptic terminals inhibited neurotransmitter release at a late prefusion step of synaptic vesicle exocytosis.
GO:0019905 syntaxin binding
IPI
PMID:11239399
SNARE complex oligomerization by synaphin/complexin is essen...
NEW
Summary: Proposed new annotation for syntaxin binding, which is noted in the UniProt DR lines (from InterPro) but absent from the GOA TSV. Both key publications demonstrate direct complexin-syntaxin interaction. Tokumaru et al. (2001) showed that complexin preferentially binds to syntaxin within the SNARE complex and that a peptide from the syntaxin-binding domain competitively inhibits this interaction [PMID:11239399]. Bracher et al. (2002) resolved the structural basis showing complexin contacts syntaxin around the ionic zero layer [PMID:12004067].
Reason: Syntaxin binding is a more specific child term of SNARE binding that is directly demonstrated in this species. It captures the preferential interaction of complexin with syntaxin within the SNARE complex. This complements the broader SNARE binding annotation.
Supporting Evidence:
PMID:11239399
Synaphin/complexin is a cytosolic protein that preferentially binds to syntaxin within the SNARE complex. We find that synaphin promotes SNAREs to form precomplexes that oligomerize into higher order structures. A peptide from the central, syntaxin binding domain of synaphin competitively inhibits these two proteins from interacting.
PMID:12004067
A helical segment of complexin binds in anti-parallel fashion to the four-helix bundle of the core SNARE complex and interacts at its C terminus with syntaxin and synaptobrevin around the ionic zero layer of the SNARE complex.

Core Functions

Complexin binds the assembled SNARE core complex containing syntaxin-1, synaptobrevin, and SNAP-25. The central helical region (residues 25-98 in the squid crystal structure) binds antiparallel to the SNARE four-helix bundle, promoting SNARE complex oligomerization into higher-order structures that scaffold vesicle fusion. Complexin has a dual function: (1) the central and accessory helices clamp the SNARE complex in a partially zippered pre-fusion state, preventing spontaneous vesicle fusion (demonstrated by 3-4 fold increase in miniature release frequency upon complexin knockdown in mammals); and (2) the N-terminal tip (~residues 1-26) is critical for activating fast Ca2+-triggered synchronous release, cooperating with the Ca2+ sensor synaptotagmin-1. Complexin and synaptotagmin-1 synergistically maintain docked vesicles in a release-ready state; Ca2+-bound synaptotagmin then releases the clamp to trigger fusion. The C-terminal amphipathic tail targets complexin to curved synaptic vesicle membranes, increasing local concentration at release sites. This protein is essential for the temporal precision of neurotransmitter release.

Supporting Evidence:
  • PMID:11239399
    Synaphin/complexin is a cytosolic protein that preferentially binds to syntaxin within the SNARE complex. We find that synaphin promotes SNAREs to form precomplexes that oligomerize into higher order structures.
  • PMID:12004067
    A helical segment of complexin binds in anti-parallel fashion to the four-helix bundle of the core SNARE complex and interacts at its C terminus with syntaxin and synaptobrevin around the ionic zero layer of the SNARE complex.

References

Gene Ontology annotation through association of InterPro records with GO terms
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
TreeGrafter-generated GO annotations
SNARE complex oligomerization by synaphin/complexin is essential for synaptic vesicle exocytosis
  • Synaphin/complexin is a cytosolic protein that preferentially binds to syntaxin within the SNARE complex and promotes SNARE complex oligomerization into higher order structures.
  • Injection of an inhibitory peptide from the syntaxin-binding domain of complexin into squid giant presynaptic terminals inhibited neurotransmitter release at a late prefusion step of synaptic vesicle exocytosis.
  • Oligomerization of SNARE complexes into a higher order structure creates a SNARE scaffold for efficient, regulated fusion of synaptic vesicles.
X-ray structure of a neuronal complexin-SNARE complex from squid
  • Crystal structure at 2.95 angstrom resolution shows a helical segment of squid complexin (residues 25-98) binds in antiparallel fashion to the SNARE four-helix bundle, contacting syntaxin and synaptobrevin at the ionic zero layer.
  • The structure is part of a multiprotein fusion machinery that regulates vesicle fusion at a late pre-fusion stage. Ca2+ may initiate membrane fusion by acting directly or indirectly on complexin.
  • Complexin's binding position on the SNARE bundle strategically prevents the final zippering of the SNAREs at the membrane-proximal end, blocking fusion until Ca2+ signaling occurs.
Molecular determinants of complexin clamping and activation function.
  • The accessory-central helical domains of complexin are essential for its inhibitory (clamping) function, and also contribute to rapid Ca2+-synchronized vesicle release.
  • Complexin and synaptotagmin-1 synergistically clamp SNARE assembly, maintaining a pool of docked vesicles ready for fast release upon Ca2+ influx.
  • The C-terminal membrane-binding domain of complexin aids clamping by tethering complexin to membranes, increasing local concentration at release sites.
Complexin controls the force transfer from SNARE complexes to membranes in fusion.
  • Complexin knockdown in mouse neurons causes a 3-4 fold increase in miniature neurotransmitter release frequency (enhanced spontaneous vesicle fusion).
  • Complexin knockdown reduces evoked EPSC amplitude by ~3-4 fold and specifically abolishes fast synchronous release triggered by action potentials.
  • Deletion of the N-terminal 26 amino acids abolishes complexin's ability to synchronize rapid release without affecting its SNARE-binding or baseline clamp.
Genetic disorders of neurotransmitter release machinery.
  • Four disease-associated CPLX1 mutations have been reported: two nonsense (E108*, C105*), one frameshift (D23Rfs*69), and one missense (L128M), causing infantile epileptic encephalopathies classified as SNAREopathies.
  • Priming of a vesicle is completed when SNAREs assemble and complexin binds to the SNARE complex, preventing it from disassembling or fully fusing the membranes.
  • Ca2+ binding to synaptotagmin-1 releases the clamp and allows SNARE complexes to rapidly complete zippering and drive membrane fusion.

📚 Additional Documentation

Deep Research Openai

(cpx-deep-research-openai.md)

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gene_info: Name=cpx;
organism_full: Doryteuthis pealeii (Longfin inshore squid) (Loligo pealeii).
protein_family: Belongs to the complexin/synaphin family. .
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Question

Gene Research for Functional Annotation

⚠️ CRITICAL: Gene/Protein Identification Context

BEFORE YOU BEGIN RESEARCH: You MUST verify you are researching the CORRECT gene/protein. Gene symbols can be ambiguous, especially for less well-characterized genes from non-model organisms.

Target Gene/Protein Identity (from UniProt):

  • UniProt Accession: Q95PA1
  • Protein Description: RecName: Full=Complexin; AltName: Full=Synaphin; Flags: Precursor;
  • Gene Information: Name=cpx;
  • Organism (full): Doryteuthis pealeii (Longfin inshore squid) (Loligo pealeii).
  • Protein Family: Belongs to the complexin/synaphin family. .
  • Key Domains: Synaphin. (IPR008849); Synaphin (PF05835)

MANDATORY VERIFICATION STEPS:

  1. Check if the gene symbol "cpx" matches the protein description above
  2. Verify the organism is correct: Doryteuthis pealeii (Longfin inshore squid) (Loligo pealeii).
  3. Check if protein family/domains align with what you find in literature
  4. If you find literature for a DIFFERENT gene with the same or similar symbol, STOP

If Gene Symbol is Ambiguous or You Cannot Find Relevant Literature:

DO NOT PROCEED WITH RESEARCH ON A DIFFERENT GENE. Instead:
- State clearly: "The gene symbol 'cpx' is ambiguous or literature is limited for this specific protein"
- Explain what you found (e.g., "Found extensive literature on a different gene with the same symbol in a different organism")
- Describe the protein based ONLY on the UniProt information provided above
- Suggest that the protein function can be inferred from domain/family information

Research Target:

Please provide a comprehensive research report on the gene cpx (gene ID: cpx, UniProt: Q95PA1) in DORPE.

The research report should be a detailed narrative explaining the function, biological processes, and localization of the gene product. Citations should be given for all claims.

You should prioritize authoritative reviews and primary scientific literature when conducting research. You can supplement
this with annotations you find in gene/protein databases, but these can be outdated or inaccurate.

We are specifically interested in the primary function of the gene - for enzymes, what reaction is catalyzed, and what is the substrate specificity? For transporters, what is the substrate? For structural proteins or adapters, what is the broader structural role? For signaling molecules, what is the role in the pathway.

We are interested in where in or outside the cell the gene product carries out its function.

We are also interested in the signaling or biochemical pathways in which the gene functions. We are less interested in broad pleiotropic effects, except where these elucidate the precise role.

Include evidence where possible. We are interested in both experimental evidence as well as inference from structure, evolution, or bioinformatic analysis. Precise studies should be prioritized over high-throughput, where available.

Output

Complexin (cpx) in Doryteuthis Pealeii: Structure, Function, and Current Insights

Gene Identity and Overview

The cpx gene in Doryteuthis pealeii (longfin squid; formerly Loligo pealeii) encodes complexin, also known as synaphin. Complexin is an evolutionarily conserved cytosolic protein that binds to SNARE complexes and regulates synaptic vesicle fusion (pmc.ncbi.nlm.nih.gov). This small protein (~130 amino acids in most species) belongs to the complexin/synaphin family (InterPro IPR008849), characterized by a largely alpha-helical structure (the synaphin domain) responsible for SNARE binding. Notably, “cpx” can be an ambiguous symbol in other organisms, but in the squid it specifically refers to this synaptic Complexin protein (distinct from unrelated CPX proteins in bacteria or other contexts). The squid complexin shares the defining features of the family, confirming that we are examining the correct gene product (UniProt Q95PA1) and not a different gene.

Protein Structure and Domain Architecture

Squid complexin is composed predominantly of an extended alpha-helix that constitutes its core functional domain. In the crystal structure of the squid complexin–SNARE complex, a segment of complexin forms an anti-parallel helix bound to the four-helix bundle of the SNARE core (pubmed.ncbi.nlm.nih.gov). This helix of complexin inserts into the groove of the SNARE complex, contacting the SNARE proteins (syntaxin and synaptobrevin) near the central “ionic zero layer” of the SNARE complex (pubmed.ncbi.nlm.nih.gov). Key regions of complexin are defined as follows:

  • Central Helical Region: The middle of complexin (~residues 30–85) is the conserved synaphin domain that directly binds the assembled SNARE complex (pubmed.ncbi.nlm.nih.gov). This binding region is necessary for complexin’s function as it allows complexin to attach to the SNARE bundle and modulate its activity.
  • N-terminal Region (Accessory Helix): The extreme N-terminus (up to ~residue 26) is relatively flexible/unstructured but is crucial for function. This region includes an “accessory” α-helix that lies adjacent to the SNARE-binding helix. Functional analyses show the N-terminal segment is essential for activating fast fusion of vesicles, even though it is not required to block spontaneous release (pmc.ncbi.nlm.nih.gov). In other words, deleting the first ~30–40 residues abolishes complexin’s ability to promote synchronous Ca²⁺-triggered neurotransmitter release, while a truncated protein retaining the central helix can still bind SNAREs and clamp fusion (pmc.ncbi.nlm.nih.gov). This suggests distinct parts of complexin carry out its dual roles (see below).
  • C-terminal Region: The C-terminus of complexin (after the central helix) is a flexible tail that plays a role in membrane targeting. Complexin lacks any transmembrane domain; instead, in many species its tail is amphipathic and can associate with lipid membranes. Recent studies show that complexin’s C-terminal domain helps target it to synaptic vesicle or plasma membranes – for example, mammalian complexin-1 localizes to highly curved membranes (like small synaptic vesicles) via its C-terminus (www.sciencedirect.com) (pmc.ncbi.nlm.nih.gov). This membrane interaction serves to increase the local concentration of complexin at release sites, enhancing its ability to clamp vesicle fusion (pmc.ncbi.nlm.nih.gov). Some complexin family members even possess a CAAX motif for lipid anchoring: notably, in mammals the retina-specific isoforms (complexin-3 and -4) have a C-terminal prenylation sequence (CAAX box) that anchors them to membranes (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). The common neuronal isoforms (complexin-1 and -2) lack a CAAX box and instead use an amphipathic lipid-binding tail. Evolutionary analyses in 2023 suggest that ancestral complexin proteins were membrane-anchored via a CAAX motif, and later variants (like most brain isoforms) evolved a non-CAAX, curvature-sensing tail for membrane association (www.sciencedirect.com). In the squid D. pealeii, complexin is likely a non-CAAX variant (akin to vertebrate complexin-1/2), containing a conserved amphipathic C-terminus for membrane binding (the UniProt entry flags it as a “precursor,” possibly reflecting a propeptide or processing of a C-terminal element, although it functions as a cytosolic protein).

In summary, the squid complexin protein consists of a central SNARE-binding helix (synaphin domain) flanked by a modulatory N-terminal segment and a membrane-associating C-terminal tail. This simple architecture underlies its ability to regulate neurotransmitter release.

Function in Neurotransmitter Release

Complexin’s primary role is as a regulatory adaptor in the process of synaptic vesicle exocytosis (neurotransmitter release). It acts at the presynaptic nerve terminal, where synaptic vesicles filled with neurotransmitter are docked and primed for release. The core fusion machinery for release is the SNARE complex: a tight four-helix bundle formed by proteins on the vesicle and plasma membranes (synaptobrevin/VAMP on the vesicle, and syntaxin-1 plus SNAP-25 on the plasma membrane) (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). The SNARE complex zippers together, pulling the vesicle membrane into contact with the cell membrane to drive fusion (pmc.ncbi.nlm.nih.gov). However, in neurons this fusion is not constitutive — it is temporally controlled so that neurotransmitter release occurs in response to an electrical signal (an action potential) and the resultant Ca²⁺ influx. Complexin is a key regulator that ensures vesicle fusion occurs at the proper time and not before.

After a vesicle is docked and a partial SNARE complex has assembled (a state often called “primed”), complexin binds to the SNARE bundle and stabilizes it in a poised state (www.frontiersin.org). In fact, priming of a vesicle is completed when the SNAREs assemble and complexin binds to the SNARE complex, preventing it from disassembling or fully fusing the membranes (www.frontiersin.org). By binding the SNARE complex, complexin essentially acts as a clamp: it allows SNAREs to form but blocks them from proceeding to membrane fusion in the absence of a trigger. This clamping function prevents premature (spontaneous) neurotransmitter release. Indeed, complexin is widely considered the “brake” on synaptic vesicle fusion, counteracting the inherent tendency of SNARE complexes to drive fusion. Experimental evidence strongly supports this clamping role – for example, when complexin is removed, neurons exhibit a dramatic increase in spontaneous fusion events. In mouse neurons, knockdown of complexin-1/2 causes a 3–4 fold increase in miniature neurotransmitter release frequency (enhanced spontaneous vesicle fusion) (pmc.ncbi.nlm.nih.gov). Similarly, knockout of complexin in Drosophila or C. elegans leads to abnormally high spontaneous neurotransmitter release at synapses (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). This indicates that, normally, complexin tightly restrains vesicles from fusing on their own. At the same time, complexin deficiency impairs the evoked, synchronous release of neurotransmitter: complexin knockdown in mammals reduces evoked excitatory postsynaptic current amplitude by ~3-4 fold and specifically abolishes fast synchronous release triggered by action potentials (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). In other words, without complexin, vesicles fuse at the wrong time (randomly at rest) and fail to fuse efficiently when Ca²⁺ is elevated, underscoring that complexin is critical both for preventing unwanted fusion and for enabling rapid, Ca-triggered fusion.

How does complexin achieve this dual effect? It operates in concert with the Ca²⁺ sensor synaptotagmin-1 as part of the finely tuned release machinery. In the resting state (low Ca²⁺), complexin and synaptotagmin-1 work together to keep the SNARE complex in a ready-but-held state. Complexin binding partially arrests the SNARE complex in a partially zippered, pre-fusion configuration (www.frontiersin.org). (Structural and biophysical studies indicate that complexin may “freeze” the SNARE complex with its C-terminal portion zippered and N-terminal portion unzippered, a state ready to complete fusion (pubmed.ncbi.nlm.nih.gov).) This clamped state is sometimes described as “SNAREpins”: several SNARE complexes are engaged but prevented from fully zipping and fusing (pmc.ncbi.nlm.nih.gov). Complexin’s presence is thought to introduce a kinetic barrier to fusion – effectively a brake – that prevents these primed SNAREpins from spontaneously proceeding to merge the membranes. Importantly, complexin does not act alone: synaptotagmin-1 (Syt1), which is localized on synaptic vesicles, also contributes to the clamp. Recent single-vesicle experiments showed that complexin and synaptotagmin-1 synergistically clamp SNARE assembly, maintaining a pool of docked vesicles that are ready for fast release upon Ca²⁺ influx (pmc.ncbi.nlm.nih.gov).

When an action potential invades the nerve terminal, voltage-gated Ca²⁺ channels open and Ca²⁺ floods in. Ca²⁺ binding to synaptotagmin-1 triggers a switch: synaptotagmin-1 interacts with the SNARE–complexin complex and membranes, thereby releasing the clamp and allowing SNARE complexes to rapidly zipper the final 50% and drive membrane fusion (www.frontiersin.org). In essence, complexin holds the vesicle in check until it receives the “go” signal from Ca²⁺-bound synaptotagmin. Upon Ca²⁺ influx, synaptotagmin-1 is thought to displace or conformationally alter complexin’s hold on the SNARE complex, unleashing full SNARE zippering and synchronous neurotransmitter release (www.frontiersin.org). This model explains why complexin is required for fast, synchronized release: it creates an arrested intermediate state that can be synchronously released by a common trigger (Ca²⁺). If complexin is absent (or cannot bind SNAREs), vesicles either fuse too early (raising baseline noise of release) or are not held in a primed state and thus fail to respond efficiently to the Ca²⁺ signal, resulting in weaker evoked release (pmc.ncbi.nlm.nih.gov).

Multiple lines of evidence confirm complexin’s dual functions. For example, targeted mutations show that different parts of the complexin molecule mediate clamping vs. activating roles. The central and accessory α-helices (residues ~26–83) are absolutely required for the inhibitory “clamp” function – these helical domains together bind the SNARE complex and prevent fusion (pmc.ncbi.nlm.nih.gov). Specific disruption of the accessory helix’s interaction with SNAREs reduces the clamping efficacy (pmc.ncbi.nlm.nih.gov). Meanwhile, the very N-terminal tip of complexin (residues 1–20, which is unstructured) is dispensable for clamping spontaneous release but is critical for promoting fast Ca²⁺-triggered fusion (pmc.ncbi.nlm.nih.gov). Deletion of the N-terminal 26 amino acids abolishes complexin’s ability to synchronize rapid release without affecting its SNARE-binding or baseline clamp ability (pmc.ncbi.nlm.nih.gov). This indicates that complexin contains a dedicated “activator” element at its extreme N-terminus that somehow helps stimulate fusion once Ca²⁺ arrives, possibly by cooperating with synaptotagmin or the SNAREs to accelerate final fusion steps (pmc.ncbi.nlm.nih.gov). In summary, complexin acts as a fusion clamp at rest and a fusion facilitator during stimulation. It occupies the SNARE complex to stabilize and block it, but also primes the complex in a conformation that is ultra-responsive to the Ca²⁺ signal.

On a biochemical level, complexin binding has been shown to compete with synaptotagmin for the SNARE complex – suggesting that when Ca²⁺-synaptotagmin arrives, it replaces complexin on the SNARE, lifting the clamp. Structural studies (X-ray crystallography and NMR) of complexin–SNARE complexes (including the squid complexin bound to squid SNARE complex) show complexin’s helix lying alongside the SNARE bundle (pubmed.ncbi.nlm.nih.gov). Interestingly, complexin’s binding is anti-parallel to the SNARE helices (complexin’s N- to C-terminus runs opposite to the direction of SNARE core assembly) (pubmed.ncbi.nlm.nih.gov). The complexin helix interfaces primarily with the SNARE complex at the center and C-terminal portion of the SNARE bundle, near the ionic layer (pubmed.ncbi.nlm.nih.gov). This strategic binding position is thought to prevent the final “zippering” of the SNAREs at the membrane-proximal end, thus blocking fusion until Ca²⁺ signaling occurs (pubmed.ncbi.nlm.nih.gov). Upon Ca²⁺ influx, synaptotagmin may bind to the SNARE–phospholipid interface and induce conformational changes that dislodge complexin or otherwise relieve the block, allowing the SNAREs to complete the fusion process (pubmed.ncbi.nlm.nih.gov) (www.frontiersin.org).

Cellular Localization and Pathways

Within the cell, complexin operates at the presynaptic terminal of neurons. It is a cytosolic protein that transiently associates with synaptic vesicle and plasma membranes via its interactions with SNARE complexes and its membrane-binding C-terminus. Complexin does not span membranes itself; instead, it likely diffuses in the cytosol of the nerve terminal and concentrates at active zones (sites of neurotransmitter release) by binding to partially assembled SNARE complexes on docked vesicles. As mentioned, complexin-1 and -2 in mammals are cytosolic but enriched at synapses by virtue of an ability to bind curved vesicle membranes (pmc.ncbi.nlm.nih.gov) (www.sciencedirect.com). In Doryteuthis squid neurons (such as the classic giant synapse), complexin would similarly localize to presynaptic terminals, attaching to SNARE complexes that tether synaptic vesicles awaiting Ca²⁺ signals. This localization is dynamic: complexin likely comes on and off SNARE complexes as vesicles cycle through docking, fusion, and recycling. The biological pathway involving complexin is the synaptic vesicle cycle – specifically, complexin acts in the vesicle priming and fusion step of neurotransmission. Complexin interacts directly with core components of the release machinery (SNARE proteins) and functionally with synaptotagmin-1 (Ca²⁺ sensor) and other accessory factors (Munc13, Munc18 which organize SNARE assembly (www.frontiersin.org)). It does not function in unrelated cellular pathways; its role is fairly specific to regulating neuronal exocytosis (though complexin homologs may also act in hormone or dense-core vesicle release in neuroendocrine cells, given the conserved mechanism). Overall, complexin is a dedicated component of the presynaptic release machinery, ensuring that synaptic vesicle fusion is temporally and spatially controlled.

Conservation and Isoforms

Complexin’s function is highly conserved across species, from invertebrates to humans (pmc.ncbi.nlm.nih.gov). Homologs of squid complexin are found in fruit flies, nematodes, mammals, and other organisms, all of which share the same general domain architecture and role in synaptic release. In Drosophila, the single complexin gene (cpx) regulates neurotransmitter release at the neuromuscular junction much like vertebrate complexins (pmc.ncbi.nlm.nih.gov). C. elegans also has a complexin that maintains vesicles in a primed state and prevents premature fusion in its neurons (pmc.ncbi.nlm.nih.gov). This broad conservation highlights that the mechanism of clamping and Ca²⁺ triggering is a fundamental feature of nervous system function. In mammals, there are four complexin genes encoding isoforms with specialized expression patterns: complexin-1 and complexin-2 are the major brain isoforms (widely expressed in the CNS), whereas complexin-3 and complexin-4 are predominantly expressed in the retina (especially at ribbon synapses) (pmc.ncbi.nlm.nih.gov). All isoforms share the central SNARE-binding domain, but complexin-3 and -4 are unique in having a CAAX prenylation motif at the C-terminus, which anchors them to membranes (pmc.ncbi.nlm.nih.gov). The widely expressed isoforms (1 and 2) lack this lipid anchor and instead use an amphipathic tail to associate with membranes. The presence or absence of a membrane anchor illustrates how evolution tweaked complexin’s localization mechanism: early ancestors of complexin likely had a membrane-anchoring sequence (CAAX), and this feature was retained in some specialized isoforms (like in retinal neurons) but lost in others in favor of a more transient membrane interaction (www.sciencedirect.com) (pmc.ncbi.nlm.nih.gov). The squid complexin is more similar to the brain-type (non-CAAX) complexins, relying on an amphipathic C-terminus for membrane association. This adaptability in membrane targeting mechanisms may relate to different speeds or modes of neurotransmitter release in various synapse types, but the core function of the protein remains the same.

Physiological and Clinical Significance

Complexin is essential for normal synaptic physiology. Mice lacking complexin-1 and -2 show phenotypes resembling a milder form of synaptotagmin-1 knockout, with perinatal lethality or severe neurological deficits due to impaired neurotransmission (pmc.ncbi.nlm.nih.gov). Complexin mutants cannot sustain normal synchronous synaptic responses, leading to defects in neuronal communication. The importance of complexin is further underscored by rare human genetic disorders linked to the CPLX1 gene (which encodes complexin-1). To date, only a handful of pathogenic variants in human complexin-1 have been documented, but their effects are dramatic. Four disease-associated CPLX1 mutations have been reported: two nonsense mutations (premature stop codons at E108 and C105), one frameshift (D23Rfs69), and one missense mutation (L128M) in the C-terminal region (www.frontiersin.org). These loss-of-function mutations cause severe early-onset neurological symptoms. Patients typically present with infantile epileptic encephalopathies, such as migrating myoclonic seizures, developmental delays, and intellectual disability (www.frontiersin.org) (www.frontiersin.org). For example, a homozygous E108X nonsense mutation in CPLX1 was identified in infants with malignant migrating epilepsy and cortical atrophy (www.frontiersin.org). Other truncating variants (like C105X) and a C-terminal missense (L128M) were found in children with refractory myoclonic epilepsy and neurodevelopmental impairments (www.frontiersin.org). These clinical cases echo the experimental findings: loss of complexin function unleashes uncontrolled synchronous firing (seizures likely due to excessive spontaneous release) and disrupts normal synaptic signaling needed for neural development. Notably, the L128M mutation lies in complexin’s C-terminal tail, which is known to be important for proper presynaptic localization and for restraining spontaneous vesicle fusion (www.frontiersin.org). Disrupting the C-terminus presumably mislocalizes complexin or weakens its clamp on vesicles, leading to hyperactive synapses and epilepsy (www.frontiersin.org). While such mutations are rare, they firmly establish complexin as a critical factor for human brain function. This has led researchers to classify complexin-related disorders under emerging categories like “SNAREopathies*” – diseases of the synaptic release machinery (www.frontiersin.org) (www.frontiersin.org). Understanding complexin’s mechanism thus has direct relevance for neurological disease, as even subtle perturbations in the release machinery can cause severe network dysfunction.

Beyond pathology, complexin is important in a variety of real-world contexts. In neuroscience research, the squid Doryteuthis pealeii has been a historically important model – its giant synapse was pivotal for studying synaptic transmission. The X-ray structure of squid complexin with SNAREs (solved in 2002) was a landmark that provided a molecular picture of how complexin clamps the fusion machinery (pubmed.ncbi.nlm.nih.gov). This structural insight, obtained from the same species as our gene of interest, has informed countless subsequent studies and theoretical models of neurotransmitter release. Complexin continues to be a focus of cutting-edge research: for instance, a 2022 single-vesicle fusion study dissected the molecular determinants of complexin’s clamp vs. activation functions, revealing how the accessory helix and central helix must work in tandem to inhibit fusion and how the complexin C-terminus aids clamping by tethering to membranes (pmc.ncbi.nlm.nih.gov). In 2023, evolutionary analyses of complexin’s membrane interaction domain shed light on how this protein adapted to different synapse types, highlighting an ancient membrane-targeting role that remains crucial for synaptic efficiency (www.sciencedirect.com) (www.sciencedirect.com). Such research not only deepens basic understanding, but also suggests that modulating complexin or its interactions could be a strategy to control synaptic release in therapeutic contexts (for example, dampening excessive neurotransmitter release in epilepsy). While no direct clinical treatments target complexin today, the protein is part of the fundamental synaptic machinery that is often indirectly affected by neuromodulatory drugs and is considered in the broader context of synaptic dysfunction in disorders.

It is also worth noting that with advances in genetic tools, even non-model organisms like D. pealeii are becoming accessible to functional studies. The first gene knockouts in squid have recently been achieved (using CRISPR in Doryteuthis embryos) (www.sciencedirect.com), raising the possibility that researchers could experimentally disrupt the squid cpx gene to study its role in the squid’s nervous system and confirm the conservation of function. Such cross-species studies can illuminate how complexin contributes to synaptic performance in unique systems (e.g. the giant axon synapse, which employs similar proteins in an extreme physiology context).

Expert Commentary and Current Understanding

Leading neuroscientists view complexin as an essential “tuner” of synaptic release – a protein that both brakes and accelerates the fusion process in a calcium-dependent manner. According to a 2013 review by Thomas Südhof, complexin and synaptotagmin together constitute the trigger control of the neurotransmitter release apparatus, with complexin clamping vesicles in a primed state and synaptotagmin acting as the Ca²⁺-dependent unclutching device (www.frontiersin.org) (www.frontiersin.org). In the words of one group, complexin “stabilizes newly primed synaptic vesicles and prevents their premature fusion” (pmc.ncbi.nlm.nih.gov), yet also “synchronizes primed vesicle exocytosis” when Ca²⁺ signals arrive (pmc.ncbi.nlm.nih.gov). This dualistic action has resolved prior controversies: early experiments saw paradoxical effects (some suggesting complexin was inhibitory, others that it was facilitatory), but it’s now clear that both observations were correct – complexin is a fusion clamp at rest and a fusion facilitator during stimulation (pmc.ncbi.nlm.nih.gov). As an expert analysis in eLife 2022 summarized, “the accessory-central helical domains of Complexin are essential for its inhibitory function… [and] also contribute to rapid Ca²⁺-synchronized vesicle release” (pmc.ncbi.nlm.nih.gov). In practical terms, this means complexin sets the stage so that synapses can achieve high-fidelity, high-speed communication: it prevents errant signals (noise) and enables a precisely timed response to an action potential. This understanding, built from structural biology, genetics, and electrophysiology, makes complexin a textbook example of a regulatory adaptor protein that is crucial for neural signaling. Current research (2023–2024) continues to refine this picture – for instance, investigating how complexin’s C-terminal membrane interactions might fine-tune release probability or how multiple complexin molecules might cross-link SNARE complexes (pmc.ncbi.nlm.nih.gov). Such studies keep complexin at the forefront of synaptic biology research.

References

  • Bracher et al., J. Biol. Chem. (2002 Jul 19) – “X-ray structure of a neuronal complexin–SNARE complex from squid” (pubmed.ncbi.nlm.nih.gov) (pubmed.ncbi.nlm.nih.gov). (Provides the structural basis for complexin binding to SNAREs; DOI: 10.1074/jbc.M203460200)
  • Frontiers in Synaptic Neuroscience (Uzay & Kavalali, 2023 Mar 31) – “Genetic disorders of neurotransmitter release machinery” (www.frontiersin.org) (www.frontiersin.org). (Overview of synaptic release process and human diseases; discusses complexin’s role and disease mutations; PMID: 37065827)
  • Bera et al., eLife 11:e71938 (Apr 20, 2022) – “Molecular determinants of complexin clamping and activation function” (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). (Detailed dissection of complexin domains in regulating fusion in vitro; PMC9020821)
  • Radoff et al., eLife 3:e04553 (2014 Nov 10) – “Accessory helix of complexin stabilizes central helix secondary structure” (pubmed.ncbi.nlm.nih.gov). (Shows how complexin’s accessory helix stabilizes a partially zippered SNARE state to mediate clamping)
  • Chang et al., J. Neurosci. 35(20):8272 (2015) – “Complexin stabilizes newly primed vesicles and prevents premature fusion at the calyx of Held” (pmc.ncbi.nlm.nih.gov). (Electrophysiological evidence in mammalian synapse for complexin’s clamp function)
  • Maximov et al., Science 323(5913):516 (2009) – “Complexin controls the force transfer from SNARE complexes to membranes in fusion” (pmc.ncbi.nlm.nih.gov) (pmc.ncbi.nlm.nih.gov). (Demonstrates increased minis and reduced evoked release upon complexin knockdown; PMID: 19164750)
  • Gong et al., PNAS 113(32):E7590 (2016) – “Mammalian complexin-1 localizes to highly curved membranes” (pmc.ncbi.nlm.nih.gov). (Shows the C-terminus targets complexin to synaptic vesicle-like membranes, supporting curvature-sensing role)
  • Karaca et al., Eur. J. Hum. Genet. 23(8):889 (2015) – (First report of CPLX1 E108X mutation in humans) (www.frontiersin.org). (Links complexin-1 truncation to early infantile epilepsy; illustrates importance of complexin in human synapses)
  • Redler et al., Neurology Genetics 3(6):e200 (2017) – (Reports additional CPLX1 mutations C105X, L128M) (www.frontiersin.org). (Reinforces that loss of complexin’s C-terminus causes epilepsy; discusses C-terminal role in function)
  • Kaeser & Regehr, Annu. Rev. Physiol. 76:333 (2014) – “Molecular mechanisms for synchronous, asynchronous, and spontaneous neurotransmission”. (General review of release modes; complexin’s clamp role summarized) (www.frontiersin.org).

(All claims in this report are supported by the cited literature. Publication dates and sources are included to emphasize the timeliness and authority of the information. The focus has been on recent (2022–2023) research advances and well-established evidence from leading journals.)

Citations

  1. AnnotationURLCitation(end_index=524, start_index=380, title='Molecular determinants of complexin clamping and activation function - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9020821/#:~:text=Synaptotagmin,1995%3B%20Huntwork%20and%20Littleton%2C%202007')
  2. AnnotationURLCitation(end_index=1617, start_index=1461, title='X-ray structure of a neuronal complexin-SNARE complex from squid - PubMed', type='url_citation', url='https://pubmed.ncbi.nlm.nih.gov/12004067/#:~:text=proteins%20including%20the%20complexins,are%20thought%20to%20drive%20membrane')
  3. AnnotationURLCitation(end_index=1963, start_index=1807, title='X-ray structure of a neuronal complexin-SNARE complex from squid - PubMed', type='url_citation', url='https://pubmed.ncbi.nlm.nih.gov/12004067/#:~:text=proteins%20including%20the%20complexins,are%20thought%20to%20drive%20membrane')
  4. AnnotationURLCitation(end_index=2329, start_index=2173, title='X-ray structure of a neuronal complexin-SNARE complex from squid - PubMed', type='url_citation', url='https://pubmed.ncbi.nlm.nih.gov/12004067/#:~:text=proteins%20including%20the%20complexins,are%20thought%20to%20drive%20membrane')
  5. AnnotationURLCitation(end_index=3045, start_index=2878, title='Complexin Controls the Force Transfer from SNARE Complexes to Membranes in Fusion - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3235366/#:~:text=sequence%20%28Cpx%5E%7B41,dual%20activating%2Fclamping%20functions%20of%20complexin')
  6. AnnotationURLCitation(end_index=3452, start_index=3285, title='Complexin Controls the Force Transfer from SNARE Complexes to Membranes in Fusion - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3235366/#:~:text=sequence%20%28Cpx%5E%7B41,dual%20activating%2Fclamping%20functions%20of%20complexin')
  7. AnnotationURLCitation(end_index=4160, start_index=4053, title='Complexin Membrane Interactions: Implications for Synapse Evolution and Function - ScienceDirect', type='url_citation', url='https://www.sciencedirect.com/science/article/abs/pii/S002228362200376X#:~:text=')
  8. AnnotationURLCitation(end_index=4302, start_index=4161, title='Molecular determinants of complexin clamping and activation function - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9020821/#:~:text=central%20domains%20of%20Complexin%20are,Independent%20of')
  9. AnnotationURLCitation(end_index=4591, start_index=4450, title='Molecular determinants of complexin clamping and activation function - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9020821/#:~:text=central%20domains%20of%20Complexin%20are,Independent%20of')
  10. AnnotationURLCitation(end_index=5002, start_index=4821, title='Calcium Control of Neurotransmitter Release - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3249630/#:~:text=Mammals%20express%20four%20complexin%20isoforms%2C,Specifically%2C%20these%20mice%20exhibited%20a')
  11. AnnotationURLCitation(end_index=5160, start_index=5003, title='Calcium Control of Neurotransmitter Release - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3249630/#:~:text=Reim%20et%20al,of%20synchronous%20neurotransmitter%20release%2C%20without')
  12. AnnotationURLCitation(end_index=5679, start_index=5510, title='Complexin Membrane Interactions: Implications for Synapse Evolution and Function - ScienceDirect', type='url_citation', url='https://www.sciencedirect.com/science/article/abs/pii/S002228362200376X#:~:text=Both%20CAAX%20and%20non,from%20an%20ancestral%20CAAX%20protein')
  13. AnnotationURLCitation(end_index=6962, start_index=6826, title='Molecular determinants of complexin clamping and activation function - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9020821/#:~:text=controlled%20by%20activity,evoked%20neurotransmitter')
  14. AnnotationURLCitation(end_index=7090, start_index=6963, title='Molecular determinants of complexin clamping and activation function - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9020821/#:~:text=at%20the%20presynaptic%20active%20zone,2019')
  15. AnnotationURLCitation(end_index=7364, start_index=7213, title='Molecular determinants of complexin clamping and activation function - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9020821/#:~:text=%28S%C3%BCdhof%2C%202013%20%3B%20%2010%29,evoked%20neurotransmitter')
  16. AnnotationURLCitation(end_index=7982, start_index=7854, title='Frontiers | Genetic disorders of neurotransmitter release machinery', type='url_citation', url='https://www.frontiersin.org/articles/10.3389/fnsyn.2023.1148957/full#:~:text=et%20al,Release%20of%20the')
  17. AnnotationURLCitation(end_index=8289, start_index=8161, title='Frontiers | Genetic disorders of neurotransmitter release machinery', type='url_citation', url='https://www.frontiersin.org/articles/10.3389/fnsyn.2023.1148957/full#:~:text=et%20al,Release%20of%20the')
  18. AnnotationURLCitation(end_index=9163, start_index=9039, title='Complexin Controls the Force Transfer from SNARE Complexes to Membranes in Fusion - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3235366/#:~:text=The%20complexin%20knock,Finally%2C%20the')
  19. AnnotationURLCitation(end_index=9428, start_index=9304, title='Complexin Controls the Force Transfer from SNARE Complexes to Membranes in Fusion - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3235366/#:~:text=The%20complexin%20knock,Finally%2C%20the')
  20. AnnotationURLCitation(end_index=9533, start_index=9429, title='Complexin Controls the Force Transfer from SNARE Complexes to Membranes in Fusion - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3235366/#:~:text=complexin%20knock,15')
  21. AnnotationURLCitation(end_index=10043, start_index=9919, title='Complexin Controls the Force Transfer from SNARE Complexes to Membranes in Fusion - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3235366/#:~:text=The%20complexin%20knock,Finally%2C%20the')
  22. AnnotationURLCitation(end_index=10148, start_index=10044, title='Complexin Controls the Force Transfer from SNARE Complexes to Membranes in Fusion - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3235366/#:~:text=complexin%20knock,15')
  23. AnnotationURLCitation(end_index=10938, start_index=10810, title='Frontiers | Genetic disorders of neurotransmitter release machinery', type='url_citation', url='https://www.frontiersin.org/articles/10.3389/fnsyn.2023.1148957/full#:~:text=et%20al,Release%20of%20the')
  24. AnnotationURLCitation(end_index=11232, start_index=11136, title='The Accessory Helix of Complexin Stabilizes a Partially Unzippered State of the SNARE Complex and Mediates the Complexin Clamping Function In Vivo - PubMed', type='url_citation', url='https://pubmed.ncbi.nlm.nih.gov/33692090/#:~:text=PubMed%20pubmed,2')
  25. AnnotationURLCitation(end_index=11504, start_index=11377, title='Molecular determinants of complexin clamping and activation function - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9020821/#:~:text=at%20the%20presynaptic%20active%20zone,2019')
  26. AnnotationURLCitation(end_index=12222, start_index=12044, title='Molecular determinants of complexin clamping and activation function - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9020821/#:~:text=Previously%20we%20reported%20that%20Synaptotagmin,vesicle%20fusion%20assay%2C%20we%20determine')
  27. AnnotationURLCitation(end_index=12707, start_index=12576, title='Frontiers | Genetic disorders of neurotransmitter release machinery', type='url_citation', url='https://www.frontiersin.org/articles/10.3389/fnsyn.2023.1148957/full#:~:text=2015%20%29,Release%20of%20the')
  28. AnnotationURLCitation(end_index=13153, start_index=13022, title='Frontiers | Genetic disorders of neurotransmitter release machinery', type='url_citation', url='https://www.frontiersin.org/articles/10.3389/fnsyn.2023.1148957/full#:~:text=2015%20%29,Release%20of%20the')
  29. AnnotationURLCitation(end_index=13683, start_index=13579, title='Complexin Controls the Force Transfer from SNARE Complexes to Membranes in Fusion - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3235366/#:~:text=complexin%20knock,15')
  30. AnnotationURLCitation(end_index=14187, start_index=14070, title='Molecular determinants of complexin clamping and activation function - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9020821/#:~:text=Synaptotagmin,helical%20accessory')
  31. AnnotationURLCitation(end_index=14405, start_index=14288, title='Molecular determinants of complexin clamping and activation function - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9020821/#:~:text=Synaptotagmin,helical%20accessory')
  32. AnnotationURLCitation(end_index=14774, start_index=14607, title='Complexin Controls the Force Transfer from SNARE Complexes to Membranes in Fusion - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3235366/#:~:text=sequence%20%28Cpx%5E%7B41,dual%20activating%2Fclamping%20functions%20of%20complexin')
  33. AnnotationURLCitation(end_index=15106, start_index=14939, title='Complexin Controls the Force Transfer from SNARE Complexes to Membranes in Fusion - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3235366/#:~:text=sequence%20%28Cpx%5E%7B41,dual%20activating%2Fclamping%20functions%20of%20complexin')
  34. AnnotationURLCitation(end_index=15521, start_index=15354, title='Complexin Controls the Force Transfer from SNARE Complexes to Membranes in Fusion - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3235366/#:~:text=sequence%20%28Cpx%5E%7B41,dual%20activating%2Fclamping%20functions%20of%20complexin')
  35. AnnotationURLCitation(end_index=16346, start_index=16190, title='X-ray structure of a neuronal complexin-SNARE complex from squid - PubMed', type='url_citation', url='https://pubmed.ncbi.nlm.nih.gov/12004067/#:~:text=proteins%20including%20the%20complexins,are%20thought%20to%20drive%20membrane')
  36. AnnotationURLCitation(end_index=16650, start_index=16508, title='X-ray structure of a neuronal complexin-SNARE complex from squid - PubMed', type='url_citation', url='https://pubmed.ncbi.nlm.nih.gov/12004067/#:~:text=squid%20core%20complexin,We%20propose%20that%20this%20structure')
  37. AnnotationURLCitation(end_index=16939, start_index=16795, title='X-ray structure of a neuronal complexin-SNARE complex from squid - PubMed', type='url_citation', url='https://pubmed.ncbi.nlm.nih.gov/12004067/#:~:text=squid%20core%20complexin,thought%20to%20drive%20membrane%20fusion')
  38. AnnotationURLCitation(end_index=17274, start_index=17116, title='X-ray structure of a neuronal complexin-SNARE complex from squid - PubMed', type='url_citation', url='https://pubmed.ncbi.nlm.nih.gov/12004067/#:~:text=SNARE%20complex%20and%20interacts%20at,thought%20to%20drive%20membrane%20fusion')
  39. AnnotationURLCitation(end_index=17652, start_index=17494, title='X-ray structure of a neuronal complexin-SNARE complex from squid - PubMed', type='url_citation', url='https://pubmed.ncbi.nlm.nih.gov/12004067/#:~:text=SNARE%20complex%20and%20interacts%20at,thought%20to%20drive%20membrane%20fusion')
  40. AnnotationURLCitation(end_index=17784, start_index=17653, title='Frontiers | Genetic disorders of neurotransmitter release machinery', type='url_citation', url='https://www.frontiersin.org/articles/10.3389/fnsyn.2023.1148957/full#:~:text=2015%20%29,Release%20of%20the')
  41. AnnotationURLCitation(end_index=18622, start_index=18481, title='Molecular determinants of complexin clamping and activation function - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9020821/#:~:text=central%20domains%20of%20Complexin%20are,Independent%20of')
  42. AnnotationURLCitation(end_index=18730, start_index=18623, title='Complexin Membrane Interactions: Implications for Synapse Evolution and Function - ScienceDirect', type='url_citation', url='https://www.sciencedirect.com/science/article/abs/pii/S002228362200376X#:~:text=')
  43. AnnotationURLCitation(end_index=19642, start_index=19472, title='Frontiers | Genetic disorders of neurotransmitter release machinery', type='url_citation', url='https://www.frontiersin.org/articles/10.3389/fnsyn.2023.1148957/full#:~:text=On%20the%20presynaptic%20membrane%2C%20syntaxin,16%20Rizo%20and%20Xu')
  44. AnnotationURLCitation(end_index=20324, start_index=20180, title='Molecular determinants of complexin clamping and activation function - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9020821/#:~:text=Synaptotagmin,1995%3B%20Huntwork%20and%20Littleton%2C%202007')
  45. AnnotationURLCitation(end_index=20801, start_index=20657, title='Molecular determinants of complexin clamping and activation function - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9020821/#:~:text=Synaptotagmin,1995%3B%20Huntwork%20and%20Littleton%2C%202007')
  46. AnnotationURLCitation(end_index=21027, start_index=20924, title='Molecular determinants of complexin clamping and activation function - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9020821/#:~:text=13,Google%20Scholar')
  47. AnnotationURLCitation(end_index=21666, start_index=21485, title='Calcium Control of Neurotransmitter Release - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3249630/#:~:text=Mammals%20express%20four%20complexin%20isoforms%2C,Specifically%2C%20these%20mice%20exhibited%20a')
  48. AnnotationURLCitation(end_index=21998, start_index=21841, title='Calcium Control of Neurotransmitter Release - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3249630/#:~:text=Reim%20et%20al,of%20synchronous%20neurotransmitter%20release%2C%20without')
  49. AnnotationURLCitation(end_index=22648, start_index=22479, title='Complexin Membrane Interactions: Implications for Synapse Evolution and Function - ScienceDirect', type='url_citation', url='https://www.sciencedirect.com/science/article/abs/pii/S002228362200376X#:~:text=Both%20CAAX%20and%20non,from%20an%20ancestral%20CAAX%20protein')
  50. AnnotationURLCitation(end_index=22806, start_index=22649, title='Calcium Control of Neurotransmitter Release - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3249630/#:~:text=Reim%20et%20al,of%20synchronous%20neurotransmitter%20release%2C%20without')
  51. AnnotationURLCitation(end_index=23631, start_index=23442, title='Calcium Control of Neurotransmitter Release - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3249630/#:~:text=isoprenylation%20sequence%20that%20is%20absent,of%20synchronous%20neurotransmitter%20release%2C%20without')
  52. AnnotationURLCitation(end_index=24424, start_index=24236, title='Frontiers | Genetic disorders of neurotransmitter release machinery', type='url_citation', url='https://www.frontiersin.org/articles/10.3389/fnsyn.2023.1148957/full#:~:text=To%20date%2C%20only%20four%20Cplx1,epilepsy%2C%20accompanied%20by%20cortical%20atrophy')
  53. AnnotationURLCitation(end_index=24857, start_index=24669, title='Frontiers | Genetic disorders of neurotransmitter release machinery', type='url_citation', url='https://www.frontiersin.org/articles/10.3389/fnsyn.2023.1148957/full#:~:text=To%20date%2C%20only%20four%20Cplx1,epilepsy%2C%20accompanied%20by%20cortical%20atrophy')
  54. AnnotationURLCitation(end_index=25054, start_index=24858, title='Frontiers | Genetic disorders of neurotransmitter release machinery', type='url_citation', url='https://www.frontiersin.org/articles/10.3389/fnsyn.2023.1148957/full#:~:text=presented%20with%20migrating%20malignant%20epilepsy%2C,could%20interfere%20with%20its%20proper')
  55. AnnotationURLCitation(end_index=25362, start_index=25196, title='Frontiers | Genetic disorders of neurotransmitter release machinery', type='url_citation', url='https://www.frontiersin.org/articles/10.3389/fnsyn.2023.1148957/full#:~:text=developmental%20delay%20and%20intellectual%20disability,terminus')
  56. AnnotationURLCitation(end_index=25726, start_index=25530, title='Frontiers | Genetic disorders of neurotransmitter release machinery', type='url_citation', url='https://www.frontiersin.org/articles/10.3389/fnsyn.2023.1148957/full#:~:text=presented%20with%20migrating%20malignant%20epilepsy%2C,could%20interfere%20with%20its%20proper')
  57. AnnotationURLCitation(end_index=26345, start_index=26154, title='Frontiers | Genetic disorders of neurotransmitter release machinery', type='url_citation', url='https://www.frontiersin.org/articles/10.3389/fnsyn.2023.1148957/full#:~:text=these%20variants%2C%20L128M%20missense%20amino,studied%2C%20and%20how%20different%20Cplx1')
  58. AnnotationURLCitation(end_index=26677, start_index=26486, title='Frontiers | Genetic disorders of neurotransmitter release machinery', type='url_citation', url='https://www.frontiersin.org/articles/10.3389/fnsyn.2023.1148957/full#:~:text=these%20variants%2C%20L128M%20missense%20amino,studied%2C%20and%20how%20different%20Cplx1')
  59. AnnotationURLCitation(end_index=27141, start_index=26950, title='Frontiers | Genetic disorders of neurotransmitter release machinery', type='url_citation', url='https://www.frontiersin.org/articles/10.3389/fnsyn.2023.1148957/full#:~:text=Mutations%20in%20the%20components%20of,with%20neurodevelopmental%20delays%20in%20language')
  60. AnnotationURLCitation(end_index=27330, start_index=27142, title='Frontiers | Genetic disorders of neurotransmitter release machinery', type='url_citation', url='https://www.frontiersin.org/articles/10.3389/fnsyn.2023.1148957/full#:~:text=To%20date%2C%20only%20four%20Cplx1,present%20with%20migrating%20myoclonic%20epilepsies')
  61. AnnotationURLCitation(end_index=28079, start_index=27923, title='X-ray structure of a neuronal complexin-SNARE complex from squid - PubMed', type='url_citation', url='https://pubmed.ncbi.nlm.nih.gov/12004067/#:~:text=proteins%20including%20the%20complexins,are%20thought%20to%20drive%20membrane')
  62. AnnotationURLCitation(end_index=28737, start_index=28620, title='Molecular determinants of complexin clamping and activation function - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9020821/#:~:text=Synaptotagmin,helical%20accessory')
  63. AnnotationURLCitation(end_index=29142, start_index=28973, title='Complexin Membrane Interactions: Implications for Synapse Evolution and Function - ScienceDirect', type='url_citation', url='https://www.sciencedirect.com/science/article/abs/pii/S002228362200376X#:~:text=Both%20CAAX%20and%20non,from%20an%20ancestral%20CAAX%20protein')
  64. AnnotationURLCitation(end_index=29250, start_index=29143, title='Complexin Membrane Interactions: Implications for Synapse Evolution and Function - ScienceDirect', type='url_citation', url='https://www.sciencedirect.com/science/article/abs/pii/S002228362200376X#:~:text=')
  65. AnnotationURLCitation(end_index=30218, start_index=30024, title='Highly Efficient Knockout of a Squid Pigmentation Gene - ScienceDirect', type='url_citation', url='https://www.sciencedirect.com/science/article/pii/S0960982220309854#:~:text=ScienceDirect%20www.sciencedirect.com%20%20...Pages%20R986,efficient%20in%20squid%20embryos')
  66. AnnotationURLCitation(end_index=31275, start_index=31114, title='Frontiers | Genetic disorders of neurotransmitter release machinery', type='url_citation', url='https://www.frontiersin.org/articles/10.3389/fnsyn.2023.1148957/full#:~:text=vesicles%20are%20completed%20when%20Syb2,Release%20of%20the')
  67. AnnotationURLCitation(end_index=31407, start_index=31276, title='Frontiers | Genetic disorders of neurotransmitter release machinery', type='url_citation', url='https://www.frontiersin.org/articles/10.3389/fnsyn.2023.1148957/full#:~:text=2015%20%29,Release%20of%20the')
  68. AnnotationURLCitation(end_index=31654, start_index=31530, title='Molecular determinants of complexin clamping and activation function - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9020821/#:~:text=match%20at%20L1237%203,14.2015.%20%5BDOI')
  69. AnnotationURLCitation(end_index=31877, start_index=31735, title='Molecular determinants of complexin clamping and activation function - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9020821/#:~:text=Schirra%20C%2C%20Rettig%20J%2C%20Reim,PMC%20free%20article')
  70. AnnotationURLCitation(end_index=32299, start_index=32195, title='Complexin Controls the Force Transfer from SNARE Complexes to Membranes in Fusion - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3235366/#:~:text=complexin%20knock,15')
  71. AnnotationURLCitation(end_index=32655, start_index=32514, title='Molecular determinants of complexin clamping and activation function - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9020821/#:~:text=central%20domains%20of%20Complexin%20are,Independent%20of')
  72. AnnotationURLCitation(end_index=33490, start_index=33320, title='Complexin cross-links pre-fusion SNAREs into a zig-zag array: a structure-based model for complexin clamping - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3410656/#:~:text=based%20model%20for%20complexin%20clamping,model%20for%20complexin%20clamping%20Daniel')
  73. AnnotationURLCitation(end_index=33873, start_index=33702, title='X-ray structure of a neuronal complexin-SNARE complex from squid - PubMed', type='url_citation', url='https://pubmed.ncbi.nlm.nih.gov/12004067/#:~:text=Nerve%20terminals%20release%20neurotransmitters%20from,regulates%20vesicle%20fusion%20at%20a')
  74. AnnotationURLCitation(end_index=34030, start_index=33874, title='X-ray structure of a neuronal complexin-SNARE complex from squid - PubMed', type='url_citation', url='https://pubmed.ncbi.nlm.nih.gov/12004067/#:~:text=proteins%20including%20the%20complexins,are%20thought%20to%20drive%20membrane')
  75. AnnotationURLCitation(end_index=34385, start_index=34257, title='Frontiers | Genetic disorders of neurotransmitter release machinery', type='url_citation', url='https://www.frontiersin.org/articles/10.3389/fnsyn.2023.1148957/full#:~:text=et%20al,Release%20of%20the')
  76. AnnotationURLCitation(end_index=34574, start_index=34386, title='Frontiers | Genetic disorders of neurotransmitter release machinery', type='url_citation', url='https://www.frontiersin.org/articles/10.3389/fnsyn.2023.1148957/full#:~:text=To%20date%2C%20only%20four%20Cplx1,epilepsy%2C%20accompanied%20by%20cortical%20atrophy')
  77. AnnotationURLCitation(end_index=34966, start_index=34825, title='Molecular determinants of complexin clamping and activation function - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9020821/#:~:text=central%20domains%20of%20Complexin%20are,Independent%20of')
  78. AnnotationURLCitation(end_index=35145, start_index=34967, title='Molecular determinants of complexin clamping and activation function - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9020821/#:~:text=Previously%20we%20reported%20that%20Synaptotagmin,vesicle%20fusion%20assay%2C%20we%20determine')
  79. AnnotationURLCitation(end_index=35483, start_index=35362, title='The Accessory Helix of Complexin Stabilizes a Partially Unzippered State of the SNARE Complex and Mediates the Complexin Clamping Function In Vivo - PubMed', type='url_citation', url='https://pubmed.ncbi.nlm.nih.gov/33692090/#:~:text=The%20Accessory%20Helix%20of%20Complexin,2')
  80. AnnotationURLCitation(end_index=35865, start_index=35741, title='Molecular determinants of complexin clamping and activation function - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9020821/#:~:text=match%20at%20L1237%203,14.2015.%20%5BDOI')
  81. AnnotationURLCitation(end_index=36214, start_index=36090, title='Complexin Controls the Force Transfer from SNARE Complexes to Membranes in Fusion - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3235366/#:~:text=The%20complexin%20knock,Finally%2C%20the')
  82. AnnotationURLCitation(end_index=36319, start_index=36215, title='Complexin Controls the Force Transfer from SNARE Complexes to Membranes in Fusion - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC3235366/#:~:text=complexin%20knock,15')
  83. AnnotationURLCitation(end_index=36652, start_index=36530, title='Molecular determinants of complexin clamping and activation function - PMC', type='url_citation', url='https://pmc.ncbi.nlm.nih.gov/articles/PMC9020821/#:~:text=mammalian%20complexin,Google%20Scholar')
  84. AnnotationURLCitation(end_index=37046, start_index=36880, title='Frontiers | Genetic disorders of neurotransmitter release machinery', type='url_citation', url='https://www.frontiersin.org/articles/10.3389/fnsyn.2023.1148957/full#:~:text=developmental%20delay%20and%20intellectual%20disability,terminus')
  85. AnnotationURLCitation(end_index=37473, start_index=37277, title='Frontiers | Genetic disorders of neurotransmitter release machinery', type='url_citation', url='https://www.frontiersin.org/articles/10.3389/fnsyn.2023.1148957/full#:~:text=presented%20with%20migrating%20malignant%20epilepsy%2C,could%20interfere%20with%20its%20proper')
  86. AnnotationURLCitation(end_index=37961, start_index=37800, title='Frontiers | Genetic disorders of neurotransmitter release machinery', type='url_citation', url='https://www.frontiersin.org/articles/10.3389/fnsyn.2023.1148957/full#:~:text=vesicles%20are%20completed%20when%20Syb2,Release%20of%20the')

📄 View Raw YAML

id: Q95PA1
gene_symbol: cpx
product_type: PROTEIN
status: IN_PROGRESS
taxon:
  id: NCBITaxon:1051067
  label: Doryteuthis pealeii
description: >-
  Complexin (synaphin) is a cytosolic protein that acts as a dual regulator of
  synaptic vesicle exocytosis at the squid giant synapse: it both clamps SNARE
  complexes to prevent spontaneous fusion and facilitates rapid Ca2+-triggered
  synchronous release. It binds preferentially to syntaxin within the assembled
  SNARE core complex (containing syntaxin-1, synaptobrevin, and SNAP-25), and
  promotes SNARE complex oligomerization into higher-order structures that form
  a scaffold for efficient, regulated vesicle fusion. The crystal structure of
  squid complexin bound to the SNARE complex (2.95 A resolution; PMID:12004067)
  reveals an alpha-helical segment (residues 25-98) that binds in antiparallel
  fashion to the SNARE four-helix bundle, contacting syntaxin and synaptobrevin
  around the ionic zero layer. The N-terminal tip (~residues 1-26) is critical for
  activating fast Ca2+-triggered fusion but dispensable for clamping. The central
  and accessory helices mediate the inhibitory clamp function, stabilizing a
  partially zippered SNARE state. The C-terminal tail is amphipathic, enabling
  membrane association via curvature sensing (non-CAAX variant, unlike retinal
  complexin-3/4 isoforms). Complexin cooperates with synaptotagmin-1 to
  synergistically clamp SNARE assembly, and Ca2+-bound synaptotagmin releases
  the clamp to trigger synchronous neurotransmitter release. In mammals,
  complexin knockout causes 3-4 fold increase in spontaneous miniature release
  and abolishes fast synchronous release. Human CPLX1 loss-of-function mutations
  cause infantile epileptic encephalopathies (SNAREopathies).
existing_annotations:
- term:
    id: GO:0000149
    label: SNARE binding
  evidence_type: IEA
  original_reference_id: GO_REF:0000118
  review:
    summary: >-
      TreeGrafter-predicted SNARE binding is strongly supported by direct experimental
      evidence from the squid giant synapse. Tokumaru et al. (2001) demonstrated that
      complexin/synaphin preferentially binds to syntaxin within the SNARE complex
      [PMID:11239399]. Bracher et al. (2002) resolved the crystal structure of squid
      complexin bound to the SNARE core complex at 2.95 angstrom resolution, showing
      detailed molecular contacts [PMID:12004067]. SNARE binding is the core molecular
      function of complexin. The term is appropriate, though syntaxin binding
      (GO:0019905) would also be valid as a more specific child term given the
      preferential syntaxin interaction.
    action: ACCEPT
    reason: >-
      SNARE binding is the defining molecular function of complexin, demonstrated
      directly in this species by both biochemical and structural studies. The term
      is at the right level of specificity since complexin binds the assembled SNARE
      complex as a whole, not just syntaxin alone.
    supported_by:
      - reference_id: PMID:11239399
        supporting_text: >-
          Synaphin/complexin is a cytosolic protein that preferentially binds to
          syntaxin within the SNARE complex.
      - reference_id: PMID:12004067
        supporting_text: >-
          A helical segment of complexin binds in anti-parallel fashion to the
          four-helix bundle of the core SNARE complex and interacts at its C terminus
          with syntaxin and synaptobrevin around the ionic zero layer of the SNARE
          complex.
- term:
    id: GO:0005829
    label: cytosol
  evidence_type: IEA
  original_reference_id: GO_REF:0000044
  review:
    summary: >-
      Cytosol localization is supported by UniProt subcellular location annotation
      and by direct experimental evidence. Tokumaru et al. (2001) identified
      complexin as a cytosolic protein in squid optic lobe [PMID:11239399]. The
      UniProt record confirms cytoplasm/cytosol localization with experimental
      evidence (ECO:0000269|PubMed:11239399).
    action: ACCEPT
    reason: >-
      Cytosol localization is experimentally confirmed in this species. Complexin
      is primarily a soluble cytosolic protein that associates with the SNARE complex
      at the membrane.
    supported_by:
      - reference_id: PMID:11239399
        supporting_text: >-
          Synaphin/complexin is a cytosolic protein that preferentially binds to
          syntaxin within the SNARE complex.
- term:
    id: GO:0006836
    label: neurotransmitter transport
  evidence_type: IEA
  original_reference_id: GO_REF:0000002
  review:
    summary: >-
      InterPro2GO mapping from the Synaphin domain (IPR008849) to neurotransmitter
      transport. This is an overly broad and somewhat imprecise annotation.
      Complexin does not function as a neurotransmitter transporter; rather, it
      regulates the exocytotic release of neurotransmitter-containing synaptic
      vesicles. The more accurate biological process terms are synaptic vesicle
      exocytosis (GO:0016079) and positive regulation of synaptic vesicle exocytosis
      (GO:2000302), both of which are already annotated or proposed.
    action: MODIFY
    reason: >-
      Neurotransmitter transport implies a direct role in moving neurotransmitter
      molecules, which is misleading. Complexin regulates exocytosis of
      neurotransmitter-containing synaptic vesicles at a late prefusion step.
      The correct process is regulation of neurotransmitter secretion or synaptic
      vesicle exocytosis, not transport per se.
    proposed_replacement_terms:
      - id: GO:2000302
        label: positive regulation of synaptic vesicle exocytosis
    supported_by:
      - reference_id: PMID:11239399
        supporting_text: >-
          Injection of this peptide into squid giant presynaptic terminals inhibited
          neurotransmitter release at a late prefusion step of synaptic vesicle
          exocytosis.
- term:
    id: GO:0016020
    label: membrane
  evidence_type: IEA
  original_reference_id: GO_REF:0000044
  review:
    summary: >-
      Membrane association is supported by UniProt annotation indicating lipid-anchor
      (farnesylation) at Cys149. The UniProt record lists membrane localization via
      lipid-anchor. While complexin is primarily cytosolic, the C-terminal farnesyl
      modification enables membrane association. This is a very broad CC term but is
      not incorrect.
    action: ACCEPT
    reason: >-
      Complexin is farnesylated at Cys149 (S-farnesyl cysteine), providing a
      lipid anchor for membrane association. The membrane annotation is consistent
      with this post-translational modification. Although a more specific membrane
      compartment (e.g. presynaptic membrane) would be preferable, the broad
      membrane term is acceptable given only the farnesylation evidence without
      specific membrane subcompartment localization data.
- term:
    id: GO:0016079
    label: synaptic vesicle exocytosis
  evidence_type: IEA
  original_reference_id: GO_REF:0000118
  review:
    summary: >-
      TreeGrafter-predicted involvement in synaptic vesicle exocytosis is strongly
      supported by experimental evidence from the squid giant synapse. Tokumaru et al.
      (2001) showed that injection of an inhibitory complexin peptide into squid giant
      presynaptic terminals blocked neurotransmitter release at a late prefusion step
      of synaptic vesicle exocytosis [PMID:11239399]. Bracher et al. (2002)
      proposed that complexin is part of a multiprotein fusion machinery that
      regulates vesicle fusion at a late pre-fusion stage [PMID:12004067]. However,
      complexin is a regulator of this process rather than a direct participant;
      a more precise annotation would be positive regulation of synaptic vesicle
      exocytosis (GO:2000302).
    action: MODIFY
    reason: >-
      While complexin is clearly involved in the synaptic vesicle exocytosis pathway,
      it functions as a positive regulator rather than a core component of the fusion
      machinery itself. The term GO:2000302 (positive regulation of synaptic vesicle
      exocytosis) more accurately captures the regulatory role demonstrated by the
      antibody and peptide inhibition experiments.
    proposed_replacement_terms:
      - id: GO:2000302
        label: positive regulation of synaptic vesicle exocytosis
    supported_by:
      - reference_id: PMID:11239399
        supporting_text: >-
          Injection of this peptide into squid giant presynaptic terminals inhibited
          neurotransmitter release at a late prefusion step of synaptic vesicle
          exocytosis.
      - reference_id: PMID:12004067
        supporting_text: >-
          We propose that this structure is part of a multiprotein fusion machinery
          that regulates vesicle fusion at a late pre-fusion stage.
- term:
    id: GO:0031201
    label: SNARE complex
  evidence_type: IEA
  original_reference_id: GO_REF:0000118
  review:
    summary: >-
      TreeGrafter-predicted localization to the SNARE complex. Complexin binds
      the assembled SNARE complex but is not a core subunit of it. The SNARE complex
      consists of syntaxin-1, synaptobrevin, and SNAP-25; complexin is an accessory
      regulatory protein that binds to the outside of the assembled four-helix
      bundle. Bracher et al. (2002) solved the crystal structure showing complexin
      bound to the SNARE complex surface [PMID:12004067]. Being a binding partner
      rather than a subunit, the part_of relationship implied by this CC annotation
      is questionable.
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      Complexin is not a core subunit of the SNARE complex; it binds to the
      exterior surface of the assembled SNARE four-helix bundle as an accessory
      regulatory protein. The part_of qualifier used in the GOA annotation
      implies complexin is a structural component of the SNARE complex, which
      is inaccurate. The SNARE binding MF annotation (GO:0000149) already
      captures this interaction appropriately.
    supported_by:
      - reference_id: PMID:12004067
        supporting_text: >-
          A helical segment of complexin binds in anti-parallel fashion to the
          four-helix bundle of the core SNARE complex and interacts at its C terminus
          with syntaxin and synaptobrevin around the ionic zero layer of the SNARE
          complex.
      - reference_id: PMID:11239399
        supporting_text: >-
          Synaphin/complexin is a cytosolic protein that preferentially binds to
          syntaxin within the SNARE complex.
- term:
    id: GO:0043195
    label: terminal bouton
  evidence_type: IEA
  original_reference_id: GO_REF:0000118
  review:
    summary: >-
      TreeGrafter-predicted localization to terminal bouton. Tokumaru et al. (2001)
      performed experiments by injecting reagents into squid giant presynaptic
      terminals, confirming that complexin functions at synaptic terminals
      [PMID:11239399]. While the squid giant synapse is anatomically distinct from
      a typical bouton, the general concept of presynaptic terminal localization
      is supported. This annotation is reasonable for a phylogenetically inferred
      term.
    action: ACCEPT
    reason: >-
      Terminal bouton localization is consistent with the known function of complexin
      at presynaptic terminals. The squid giant synapse experiments directly
      demonstrate complexin activity at the presynaptic terminal. While the squid
      giant synapse is not a classical bouton, the TreeGrafter inference from
      mammalian complexin orthologs is phylogenetically sound.
    supported_by:
      - reference_id: PMID:11239399
        supporting_text: >-
          Injection of this peptide into squid giant presynaptic terminals inhibited
          neurotransmitter release at a late prefusion step of synaptic vesicle
          exocytosis.
- term:
    id: GO:0046928
    label: regulation of neurotransmitter secretion
  evidence_type: IEA
  original_reference_id: GO_REF:0000118
  review:
    summary: >-
      TreeGrafter-predicted involvement in regulation of neurotransmitter secretion.
      This is well supported by experimental evidence. Tokumaru et al. (2001)
      demonstrated that complexin is essential for neurotransmitter release at the
      squid giant synapse, and that blocking complexin-syntaxin interaction inhibits
      neurotransmitter release [PMID:11239399]. This term is acceptable but slightly
      less specific than positive regulation of synaptic vesicle exocytosis
      (GO:2000302), which better captures the mechanism.
    action: ACCEPT
    reason: >-
      Regulation of neurotransmitter secretion is an accurate annotation for
      complexin. While GO:2000302 (positive regulation of synaptic vesicle
      exocytosis) is more mechanistically precise, this broader regulatory term
      is also correct and captures the physiological outcome. Keeping both provides
      complementary granularity.
    supported_by:
      - reference_id: PMID:11239399
        supporting_text: >-
          Injection of this peptide into squid giant presynaptic terminals inhibited
          neurotransmitter release at a late prefusion step of synaptic vesicle
          exocytosis.
- term:
    id: GO:2000302
    label: positive regulation of synaptic vesicle exocytosis
  evidence_type: IDA
  original_reference_id: PMID:11239399
  review:
    summary: >-
      Proposed new annotation based on direct experimental evidence from the squid
      giant synapse. Tokumaru et al. (2001) demonstrated that complexin positively
      regulates synaptic vesicle exocytosis: blocking complexin function with
      antibodies or inhibitory peptides inhibited neurotransmitter release at a late
      prefusion step [PMID:11239399]. UniProt also annotates this protein as
      positively regulating a late step in synaptic vesicle exocytosis. This is the
      most precise biological process term for complexin function.
    action: NEW
    reason: >-
      This term precisely captures the experimentally demonstrated positive regulatory
      role of complexin in synaptic vesicle exocytosis, which is the core biological
      function of this protein. It is more specific than both GO:0016079 (synaptic
      vesicle exocytosis) and GO:0046928 (regulation of neurotransmitter secretion).
    supported_by:
      - reference_id: PMID:11239399
        supporting_text: >-
          SNARE complex oligomerization by synaphin/complexin is essential for
          synaptic vesicle exocytosis.
      - reference_id: PMID:11239399
        supporting_text: >-
          Injection of this peptide into squid giant presynaptic terminals inhibited
          neurotransmitter release at a late prefusion step of synaptic vesicle
          exocytosis.
- term:
    id: GO:0019905
    label: syntaxin binding
  evidence_type: IPI
  original_reference_id: PMID:11239399
  review:
    summary: >-
      Proposed new annotation for syntaxin binding, which is noted in the UniProt
      DR lines (from InterPro) but absent from the GOA TSV. Both key publications
      demonstrate direct complexin-syntaxin interaction. Tokumaru et al. (2001)
      showed that complexin preferentially binds to syntaxin within the SNARE complex
      and that a peptide from the syntaxin-binding domain competitively inhibits
      this interaction [PMID:11239399]. Bracher et al. (2002) resolved the structural
      basis showing complexin contacts syntaxin around the ionic zero layer
      [PMID:12004067].
    action: NEW
    reason: >-
      Syntaxin binding is a more specific child term of SNARE binding that is
      directly demonstrated in this species. It captures the preferential interaction
      of complexin with syntaxin within the SNARE complex. This complements the
      broader SNARE binding annotation.
    supported_by:
      - reference_id: PMID:11239399
        supporting_text: >-
          Synaphin/complexin is a cytosolic protein that preferentially binds to
          syntaxin within the SNARE complex. We find that synaphin promotes SNAREs
          to form precomplexes that oligomerize into higher order structures. A
          peptide from the central, syntaxin binding domain of synaphin competitively
          inhibits these two proteins from interacting.
      - reference_id: PMID:12004067
        supporting_text: >-
          A helical segment of complexin binds in anti-parallel fashion to the
          four-helix bundle of the core SNARE complex and interacts at its C terminus
          with syntaxin and synaptobrevin around the ionic zero layer of the SNARE
          complex.
references:
- id: GO_REF:0000002
  title: Gene Ontology annotation through association of InterPro records with GO terms
  findings: []
- id: GO_REF:0000044
  title: >-
    Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location
    vocabulary mapping, accompanied by conservative changes to GO terms applied by
    UniProt
  findings: []
- id: GO_REF:0000118
  title: TreeGrafter-generated GO annotations
  findings: []
- id: PMID:11239399
  title: >-
    SNARE complex oligomerization by synaphin/complexin is essential for synaptic
    vesicle exocytosis
  findings:
    - statement: >-
        Synaphin/complexin is a cytosolic protein that preferentially binds to syntaxin
        within the SNARE complex and promotes SNARE complex oligomerization into higher
        order structures.
    - statement: >-
        Injection of an inhibitory peptide from the syntaxin-binding domain of complexin
        into squid giant presynaptic terminals inhibited neurotransmitter release at a
        late prefusion step of synaptic vesicle exocytosis.
    - statement: >-
        Oligomerization of SNARE complexes into a higher order structure creates a SNARE
        scaffold for efficient, regulated fusion of synaptic vesicles.
- id: PMID:12004067
  title: X-ray structure of a neuronal complexin-SNARE complex from squid
  findings:
    - statement: >-
        Crystal structure at 2.95 angstrom resolution shows a helical segment of squid
        complexin (residues 25-98) binds in antiparallel fashion to the SNARE four-helix
        bundle, contacting syntaxin and synaptobrevin at the ionic zero layer.
    - statement: >-
        The structure is part of a multiprotein fusion machinery that regulates vesicle
        fusion at a late pre-fusion stage. Ca2+ may initiate membrane fusion by acting
        directly or indirectly on complexin.
    - statement: >-
        Complexin's binding position on the SNARE bundle strategically prevents the
        final zippering of the SNAREs at the membrane-proximal end, blocking fusion
        until Ca2+ signaling occurs.
- id: PMID:35377328
  title: Molecular determinants of complexin clamping and activation function.
  findings:
    - statement: >-
        The accessory-central helical domains of complexin are essential for its inhibitory
        (clamping) function, and also contribute to rapid Ca2+-synchronized vesicle release.
    - statement: >-
        Complexin and synaptotagmin-1 synergistically clamp SNARE assembly, maintaining
        a pool of docked vesicles ready for fast release upon Ca2+ influx.
    - statement: >-
        The C-terminal membrane-binding domain of complexin aids clamping by tethering
        complexin to membranes, increasing local concentration at release sites.
- id: PMID:19164750
  title: Complexin controls the force transfer from SNARE complexes to membranes in fusion.
  findings:
    - statement: >-
        Complexin knockdown in mouse neurons causes a 3-4 fold increase in miniature
        neurotransmitter release frequency (enhanced spontaneous vesicle fusion).
    - statement: >-
        Complexin knockdown reduces evoked EPSC amplitude by ~3-4 fold and specifically
        abolishes fast synchronous release triggered by action potentials.
    - statement: >-
        Deletion of the N-terminal 26 amino acids abolishes complexin's ability to
        synchronize rapid release without affecting its SNARE-binding or baseline clamp.
- id: PMID:37065827
  title: Genetic disorders of neurotransmitter release machinery.
  findings:
    - statement: >-
        Four disease-associated CPLX1 mutations have been reported: two nonsense (E108*,
        C105*), one frameshift (D23Rfs*69), and one missense (L128M), causing infantile
        epileptic encephalopathies classified as SNAREopathies.
    - statement: >-
        Priming of a vesicle is completed when SNAREs assemble and complexin binds to
        the SNARE complex, preventing it from disassembling or fully fusing the membranes.
    - statement: >-
        Ca2+ binding to synaptotagmin-1 releases the clamp and allows SNARE complexes
        to rapidly complete zippering and drive membrane fusion.
core_functions:
- description: >-
    Complexin binds the assembled SNARE core complex containing syntaxin-1,
    synaptobrevin, and SNAP-25. The central helical region (residues 25-98 in the
    squid crystal structure) binds antiparallel to the SNARE four-helix bundle,
    promoting SNARE complex oligomerization into higher-order structures that scaffold
    vesicle fusion. Complexin has a dual function: (1) the central and accessory helices
    clamp the SNARE complex in a partially zippered pre-fusion state, preventing
    spontaneous vesicle fusion (demonstrated by 3-4 fold increase in miniature
    release frequency upon complexin knockdown in mammals); and (2) the N-terminal
    tip (~residues 1-26) is critical for activating fast Ca2+-triggered synchronous
    release, cooperating with the Ca2+ sensor synaptotagmin-1. Complexin and
    synaptotagmin-1 synergistically maintain docked vesicles in a release-ready state;
    Ca2+-bound synaptotagmin then releases the clamp to trigger fusion. The C-terminal
    amphipathic tail targets complexin to curved synaptic vesicle membranes, increasing
    local concentration at release sites. This protein is essential for the temporal
    precision of neurotransmitter release.
  molecular_function:
    id: GO:0000149
    label: SNARE binding
  directly_involved_in:
  - id: GO:2000302
    label: positive regulation of synaptic vesicle exocytosis
  locations:
  - id: GO:0005829
    label: cytosol
  - id: GO:0043195
    label: terminal bouton
  supported_by:
  - reference_id: PMID:11239399
    supporting_text: >-
      Synaphin/complexin is a cytosolic protein that preferentially binds to syntaxin
      within the SNARE complex. We find that synaphin promotes SNAREs to form
      precomplexes that oligomerize into higher order structures.
  - reference_id: PMID:12004067
    supporting_text: >-
      A helical segment of complexin binds in anti-parallel fashion to the four-helix
      bundle of the core SNARE complex and interacts at its C terminus with syntaxin
      and synaptobrevin around the ionic zero layer of the SNARE complex.