Git

UniProt ID: Q95RG8
Organism: Drosophila melanogaster
Review Status: COMPLETE
Aliases:
dGIT arfgap2 CG16728
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Gene Description

ARF GTPase-activating protein that functions as a multidomain scaffold protein, forming a conserved dPix-Git-PAK complex at focal adhesion-like sites. Git stimulates GTP hydrolysis on ARF family GTPases (particularly Arf79F, the fly ARF1 ortholog), acts as a molecular adaptor targeting the complex basally via its paxillin-binding domain, and regulates actomyosin dynamics, synaptic vesicle recycling, and Hippo pathway signaling.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0045202 synapse
IBA
GO_REF:0000033
ACCEPT
Summary: Git localizes to presynaptic active zones and is involved in synaptic vesicle recycling. IBA annotation is phylogenetically sound and supported by direct evidence in Drosophila from PMID:24882013.
Reason: The IBA annotation reflects conserved synaptic localization across the GIT family. Direct Drosophila evidence shows dGIT at presynaptic active zones (IDA from PMID:24882013) and involvement in synaptic vesicle recycling (IMP from PMID:24882013). The synapse annotation appropriately captures this localization.
Supporting Evidence:
PMID:24882013
GIT1 and its D. melanogaster ortholog, dGIT, are shown to directly associate with the endocytic adaptor stonin 2/stoned B. In Drosophila dgit mutants, stoned B and synaptotagmin levels are reduced and stoned B is partially mislocalized.
file:DROME/git/git-deep-research-falcon.md
model: Edison Scientific Literature
GO:0007420 brain development
IBA
GO_REF:0000033
ACCEPT
Summary: Git is required for brain development in Drosophila, with mutants showing decreased central brain size and abnormal mushroom body morphology. IBA annotation is well-supported by direct experimental evidence in fly.
Reason: The IBA annotation is strongly supported by direct Drosophila evidence (IMP from PMID:25792865). dGit mutants show severely decreased central brain size and defects in mushroom body development.
Supporting Evidence:
PMID:25792865
dGitex21C Drosophila mutants also exhibited severely decreased central brain size
GO:0005096 GTPase activator activity
IBA
GO_REF:0000033
ACCEPT
Summary: Git contains a well-characterized ARF-GAP domain and functions as a GTPase activating protein for ARF family members. This is a core molecular function supported by domain architecture and genetic/interaction data.
Reason: GTPase activator activity is the primary enzymatic function of Git. The protein contains an ArfGAP domain (aa 32-168) with a C4-type zinc finger, and genetic evidence places Git upstream of Arf79F in Hippo signaling (PMID:38240353). This represents a core function.
Supporting Evidence:
PMID:18996366
GIT1-like proteins are GTPase-activating proteins (GAPs) for Arfs and interact with a variety of signaling molecules to function as integrators of pathways controlling cytoskeletal organization and cell motility.
GO:0008277 regulation of G protein-coupled receptor signaling pathway
IBA
GO_REF:0000033
KEEP AS NON CORE
Summary: While Git was originally named for "G protein-coupled receptor kinase interacting protein", evidence for direct GPCR signaling regulation in Drosophila is limited. The IBA annotation likely derives from mammalian orthologs where this connection is better established.
Reason: The GIT family was initially identified through interaction with G-protein coupled receptor kinases in mammals, but direct evidence for this role in Drosophila Git is lacking. The primary functions of dGit appear to be in adhesion-cytoskeletal signaling, synaptic function, and Hippo pathway regulation. Keep as non-core pending additional Drosophila-specific evidence.
Supporting Evidence:
PMID:18996366
GIT1-like proteins are GTPase-activating proteins (GAPs) for Arfs and interact with a variety of signaling molecules to function as integrators of pathways controlling cytoskeletal organization and cell motility.
GO:0031267 small GTPase binding
IBA
GO_REF:0000033
ACCEPT
Summary: Git binds to small GTPases including Arf79F (ARF1 ortholog) to regulate their activity. This is consistent with Git's ARF-GAP function.
Reason: As an ARF-GAP, Git necessarily binds to ARF family small GTPases as substrates. Proximity ligation assays in PMID:38240353 demonstrate Git-Arf79F interaction in larval tissues. This binding is essential for Git's GAP activity.
Supporting Evidence:
PMID:38240353
Git, which also bind to the Hippo protein (Hpo) and are involved in the activation of the Hippo pathway. Additionally, we show that the ADP ribosylation factor Arf79F (Arf1), which is a Hpo interactor
GO:0032012 regulation of ARF protein signal transduction
IBA
GO_REF:0000033
ACCEPT
Summary: Git regulates ARF protein signaling through its GAP activity on Arf79F. This is a core function supported by genetic and physical interaction data.
Reason: Git functions as an ARF-GAP that restrains Arf79F activity. Genetic evidence from PMID:38240353 shows that Arf79F knockdown rescues Hippo pathway defects in lgl mutants, placing Git in a pathway that negatively regulates Arf79F to activate Hippo signaling.
Supporting Evidence:
PMID:38240353
Lgl acts via Vap33 to activate the Hippo pathway by a dual mechanism: (1) through interaction with RtGEF, Git and Arf79F
GO:0036465 synaptic vesicle recycling
IBA
GO_REF:0000033
ACCEPT
Summary: Git is required for proper synaptic vesicle recycling at the neuromuscular junction. IBA annotation is directly supported by experimental evidence in Drosophila.
Reason: The IBA annotation is well-supported by IMP evidence from PMID:24882013 showing that dgit mutants have morphological and functional defects in synaptic vesicle recycling.
Supporting Evidence:
PMID:24882013
Moreover, dgit mutants show morphological and functional defects in SV recycling. These data establish a presynaptic role for GIT in SV recycling and suggest a connection between the AZ cytomatrix and the endocytic machinery.
GO:0000922 spindle pole
IEA
GO_REF:0000044
UNDECIDED
Summary: Spindle pole localization is inferred from mammalian ortholog data in UniProt. Direct evidence for spindle pole localization of dGit in Drosophila is not available.
Reason: This IEA annotation is based on mammalian ortholog localization data. While GIT family proteins may localize to spindle poles in some contexts, direct Drosophila evidence is lacking. The primary characterized localizations for dGit are cytoplasm, cell leading edge, focal adhesion-like structures, and presynaptic active zones.
GO:0005096 GTPase activator activity
IEA
GO_REF:0000120
ACCEPT
Summary: IEA annotation based on InterPro domain (ArfGAP) correctly captures Git's enzymatic function. Duplicates the IBA annotation but with different evidence.
Reason: Git contains a well-defined ArfGAP domain (IPR001164) with the characteristic zinc finger. The IEA annotation from domain mapping is correct and complements the IBA annotation.
Supporting Evidence:
PMID:12618308
I surveyed Drosophila and human sequence databases for genes predicting proteins related to GAPs for Ras superfamily members
GO:0005737 cytoplasm
IEA
GO_REF:0000044
ACCEPT
Summary: Cytoplasmic localization is supported by direct IDA evidence in Drosophila (PMID:18996366). The IEA annotation is consistent with experimental data.
Reason: The IEA annotation is consistent with direct experimental evidence from PMID:18996366 showing cytoplasmic localization of dGit protein in embryonic muscle syncytia.
Supporting Evidence:
PMID:18996366
The dGIT protein is concentrated at the termini of growing myotubes and localizes to muscle attachment sites in late stage embryos.
GO:0005813 centrosome
IEA
GO_REF:0000044
UNDECIDED
Summary: Centrosome localization is inferred from mammalian ortholog data. Direct Drosophila evidence for centrosome localization is not available.
Reason: This IEA annotation is based on mammalian ortholog data. Direct evidence for centrosome localization of dGit in Drosophila has not been reported. The characterized Drosophila localizations are cytoplasm, leading edge, focal adhesions, and presynaptic zones.
GO:0005925 focal adhesion
IEA
GO_REF:0000044
ACCEPT
Summary: Git localizes to focal adhesion-like structures in Drosophila epithelia via its paxillin-binding domain. IEA annotation is well-supported by Drosophila studies.
Reason: Although annotated via IEA, focal adhesion localization is strongly supported by primary Drosophila literature. Git's C-terminal paxillin-binding domain mediates targeting to basal focal adhesion-like structures in follicular epithelium.
Supporting Evidence:
PMID:18996366
The dGIT protein is concentrated at the termini of growing myotubes and localizes to muscle attachment sites in late stage embryos.
GO:0007420 brain development
IEA
GO_REF:0000002
ACCEPT
Summary: IEA annotation from InterPro mapping. Brain development role is well-established by direct experimental evidence in Drosophila.
Reason: The IEA annotation correctly captures Git's role in brain development, which is directly demonstrated in Drosophila by IMP evidence (PMID:25792865) showing reduced brain size and mushroom body defects in dGit mutants.
Supporting Evidence:
PMID:25792865
dGitex21C Drosophila mutants also exhibited severely decreased central brain size
GO:0008270 zinc ion binding
IEA
GO_REF:0000043
ACCEPT
Summary: Git contains a C4-type zinc finger (aa 49-72) within its ArfGAP domain that coordinates zinc ions. This is structurally well-supported.
Reason: The zinc ion binding annotation correctly reflects the presence of a C4-type zinc finger within the ArfGAP domain. This zinc finger is essential for the structural integrity and function of the GAP domain.
GO:0030027 lamellipodium
IEA
GO_REF:0000044
ACCEPT
Summary: Lamellipodium localization is inferred from mammalian ortholog data. In Drosophila, Git localizes to leading edges of cells, which includes lamellipodia-like structures.
Reason: While annotated via IEA, the localization is consistent with direct Drosophila evidence showing Git at "the leading edge of growing myotubes" (PMID:18996366). Cell leading edge structures include lamellipodia.
Supporting Evidence:
PMID:18996366
The dGIT protein is concentrated at the termini of growing myotubes and localizes to muscle attachment sites in late stage embryos
GO:0032012 regulation of ARF protein signal transduction
IEA
GO_REF:0000002
ACCEPT
Summary: IEA annotation from InterPro correctly captures Git's role in ARF signaling regulation. Git regulates Arf79F in the Hippo pathway.
Reason: The IEA annotation is correct and consistent with the IBA annotation and experimental data showing Git's function in regulating ARF signaling, particularly Arf79F in the context of Hippo pathway activation.
Supporting Evidence:
PMID:38240353
Lgl acts via Vap33 to activate the Hippo pathway by a dual mechanism: (1) through interaction with RtGEF, Git and Arf79F
GO:0045202 synapse
IEA
GO_REF:0000044
ACCEPT
Summary: IEA annotation for synapse localization is consistent with direct experimental evidence showing Git at presynaptic active zones in Drosophila.
Reason: The IEA annotation is well-supported by IDA evidence from PMID:24882013 showing dGit at the presynaptic active zone. Git functions in synaptic vesicle recycling at the synapse.
Supporting Evidence:
PMID:24882013
Here, we identify the scaffold G protein coupled receptor kinase 2 interacting (GIT) protein as a component of the AZ-associated cytomatrix
GO:0046872 metal ion binding
IEA
GO_REF:0000043
ACCEPT
Summary: Metal ion binding is a parent term of zinc ion binding. Git binds zinc through its C4-type zinc finger.
Reason: This is a correct parent annotation to zinc ion binding. Git's ArfGAP domain contains a zinc-coordinating C4-type zinc finger motif.
GO:0005515 protein binding
IPI
PMID:14605208
A protein interaction map of Drosophila melanogaster.
MODIFY
Summary: High-throughput two-hybrid screen identified Git interactions with RtGEF (dPix). While protein binding is uninformative, the interaction with RtGEF is functionally significant for Git's scaffold function.
Reason: The protein binding (GO:0005515) term is uninformative. Git functions as a molecular adaptor that specifically binds dPix/RtGEF and PAK. The more informative annotation GO:0060090 (molecular adaptor activity) is already captured with IMP evidence from PMID:25484297.
Proposed replacements: molecular adaptor activity
Supporting Evidence:
PMID:14605208
A two-hybrid-based protein-interaction map of the fly proteome...The network recapitulated known pathways, extended pathways, and uncovered previously unknown pathway components.
GO:0005515 protein binding
IPI
PMID:38944040
Next-generation Drosophila protein interactome map and its f...
MODIFY
Summary: Next-generation protein interactome study confirming Git-RtGEF interaction. While the specific interaction is meaningful, protein binding is uninformative.
Reason: The protein binding annotation is too general to be informative. Git's key function is as a scaffold/adaptor protein that brings together specific partners (dPix, PAK, Hpo, Arf79F). The interaction with RtGEF supports Git's molecular adaptor function.
Proposed replacements: molecular adaptor activity
Supporting Evidence:
PMID:38944040
Epub 2024 Jun 28. Next-generation Drosophila protein interactome map and its functional implications.
GO:0035332 positive regulation of hippo signaling
IGI
PMID:38240353
The Drosophila tumour suppressor Lgl and Vap33 activate the ...
ACCEPT
Summary: Git is part of the Vap33-RtGEF-Git-Arf79F module that activates Hippo signaling. Genetic interaction data shows Git knockdown rescues Hippo pathway defects in V-ATPase mutants.
Reason: Well-supported by genetic evidence from PMID:38240353. Vap33 physically interacts with RtGEF and Git, which bind to Hpo. Git knockdown rescues reduced Diap1 expression in Vha68-2 mutant clones, demonstrating Git's role in Hippo pathway activation.
Supporting Evidence:
PMID:38240353
Git knockdown rescues the reduced Hippo pathway target gene expression in Vha68-2 mutant clones
GO:0007420 brain development
IMP
PMID:25792865
A Critical Role of GIT1 in Vertebrate and Invertebrate Brain...
ACCEPT
Summary: dGit mutants show decreased central brain size and abnormal mushroom body development, directly demonstrating Git's role in brain development.
Reason: Direct experimental evidence from mutant analysis. dGitex21C mutants show severely decreased central brain size and defects in mushroom body alpha and beta lobe development.
Supporting Evidence:
PMID:25792865
Consistent with Git1-/- mice, dGitex21C Drosophila mutants also exhibited severely decreased central brain size
GO:0046621 negative regulation of organ growth
IGI
PMID:25484297
The GTPase regulatory proteins Pix and Git control tissue gr...
ACCEPT
Summary: Git and Pix control tissue growth via the Hippo pathway. Git promotes Hpo activation, which restricts tissue growth. This is a core function linking Git to growth control.
Reason: Strong genetic evidence from PMID:25484297. Git and Pix form an oligomeric scaffold that promotes Hpo dimerization and autophosphorylation, thereby activating Hippo signaling and restricting organ growth.
Supporting Evidence:
PMID:25484297
We show that Pix and Git regulate Hippo-pathway-dependent tissue growth in D. melanogaster and that they do this in parallel to the known upstream regulator Fat cadherin.
GO:0035332 positive regulation of hippo signaling
IGI
PMID:25484297
The GTPase regulatory proteins Pix and Git control tissue gr...
ACCEPT
Summary: Git and Pix promote Hpo kinase activation by facilitating Hpo dimerization and autophosphorylation. This is a core signaling function.
Reason: Well-characterized mechanism from PMID:25484297. Pix and Git act as scaffold proteins to promote Hpo dimerization and autophosphorylation of its activation loop, thereby activating the Hippo pathway.
Supporting Evidence:
PMID:25484297
Pix and Git influence activity of the Hpo kinase by acting as a scaffold complex, rather than enzymes, and promote Hpo dimerization and autophosphorylation of Hpo's activation loop.
GO:0060090 molecular adaptor activity
IMP
PMID:25484297
The GTPase regulatory proteins Pix and Git control tissue gr...
ACCEPT
Summary: Git functions as a molecular adaptor/scaffold that brings together dPix, PAK, and Hpo to facilitate signaling. This is a core molecular function.
Reason: Well-supported core function. Git acts as a scaffold rather than an enzyme in promoting Hippo pathway activation. Git's adaptor function is also demonstrated in its role bringing together dPix and PAK at adhesion sites.
Supporting Evidence:
PMID:25484297
Pix and Git influence activity of the Hpo kinase by acting as a scaffold complex, rather than enzymes
GO:1905383 protein localization to presynapse
IMP
PMID:24882013
A presynaptic role for the cytomatrix protein GIT in synapti...
ACCEPT
Summary: Git is required for proper localization of synaptic proteins (stoned B, synaptotagmin) to the presynapse. dgit mutants show reduced and mislocalized stoned B.
Reason: Direct evidence from PMID:24882013. In dgit mutants, stoned B levels are reduced and the protein is partially mislocalized from the presynaptic compartment.
Supporting Evidence:
PMID:24882013
In Drosophila dgit mutants, stoned B and synaptotagmin levels are reduced and stoned B is partially mislocalized.
GO:0005515 protein binding
IPI
PMID:24882013
A presynaptic role for the cytomatrix protein GIT in synapti...
MODIFY
Summary: Git interacts with stonin 2/stoned B at the presynapse. While the specific interaction is meaningful for synaptic function, protein binding is uninformative.
Reason: The protein binding term is too general. The functionally relevant annotation is the specific interaction with stoned B that facilitates synaptic vesicle endocytosis. This interaction supports Git's role as a presynaptic scaffold.
Proposed replacements: molecular adaptor activity
Supporting Evidence:
PMID:24882013
GIT1 and its D. melanogaster ortholog, dGIT, are shown to directly associate with the endocytic adaptor stonin 2/stoned B.
GO:0048786 presynaptic active zone
IDA
PMID:24882013
A presynaptic role for the cytomatrix protein GIT in synapti...
ACCEPT
Summary: Direct localization evidence showing Git at the presynaptic active zone cytomatrix. This is a well-supported subcellular localization.
Reason: Direct assay evidence from PMID:24882013 demonstrating Git localization to the active zone-associated cytomatrix.
Supporting Evidence:
PMID:24882013
Here, we identify the scaffold G protein coupled receptor kinase 2 interacting (GIT) protein as a component of the AZ-associated cytomatrix
GO:0048788 cytoskeleton of presynaptic active zone
IDA
PMID:24882013
A presynaptic role for the cytomatrix protein GIT in synapti...
ACCEPT
Summary: Git colocalizes with the cytoskeletal components of the presynaptic active zone. The annotation uses "colocalizes_with" qualifier, appropriately reflecting the colocalization rather than integral association.
Reason: Direct evidence from PMID:24882013 showing Git association with the presynaptic cytomatrix. Git's scaffold function at the active zone involves the cytoskeletal framework.
Supporting Evidence:
PMID:24882013
Here, we identify the scaffold G protein coupled receptor kinase 2 interacting (GIT) protein as a component of the AZ-associated cytomatrix
GO:0099504 synaptic vesicle cycle
IMP
PMID:24882013
A presynaptic role for the cytomatrix protein GIT in synapti...
ACCEPT
Summary: Git is required for normal synaptic vesicle cycling. dgit mutants show defects in both exo- and endocytic aspects of the vesicle cycle.
Reason: Direct evidence from mutant analysis in PMID:24882013 showing morphological and functional defects in synaptic vesicle cycling in dgit mutants.
Supporting Evidence:
PMID:24882013
dgit mutants show morphological and functional defects in SV recycling. These data establish a presynaptic role for GIT in SV recycling
GO:0036465 synaptic vesicle recycling
IMP
PMID:24882013
A presynaptic role for the cytomatrix protein GIT in synapti...
ACCEPT
Summary: Git is specifically required for synaptic vesicle recycling, the endocytic retrieval phase of the vesicle cycle. This is a core synaptic function.
Reason: Direct evidence from PMID:24882013. Git associates with the endocytic adaptor stoned B and is required for proper SV recycling. This is a core presynaptic function.
Supporting Evidence:
PMID:24882013
dgit mutants show morphological and functional defects in SV recycling. These data establish a presynaptic role for GIT in SV recycling and suggest a connection between the AZ cytomatrix and the endocytic machinery.
GO:0016319 mushroom body development
IMP
PMID:25792865
A Critical Role of GIT1 in Vertebrate and Invertebrate Brain...
ACCEPT
Summary: dGit mutants show defects in mushroom body development, with abnormal alpha and beta lobe morphology. This is a well-supported developmental function.
Reason: Direct mutant analysis in PMID:25792865 shows dGitex21C mutants have abnormal mushroom body development, with the most common defect being early termination of one alpha-lobe (58%).
Supporting Evidence:
PMID:25792865
was significantly affected by the deletion of dGit. (Fig. 4C). However, the penetrance of this impaired mushroom body development was incomplete
GO:0005096 GTPase activator activity
ISM
PMID:12618308
GAPs galore! A survey of putative Ras superfamily GTPase act...
ACCEPT
Summary: ISM annotation based on computational survey of GAP domains. Git is correctly identified as an ARF-GAP based on sequence analysis.
Reason: The computational survey in PMID:12618308 correctly identified Git (CG16728) as encoding an ARF-GAP based on domain analysis. This is consistent with the experimentally validated function.
Supporting Evidence:
PMID:12618308
To facilitate genetic analysis, I surveyed Drosophila and human sequence databases for genes predicting proteins related to GAPs for Ras superfamily members
GO:0005737 cytoplasm
IDA
PMID:18996366
The Drosophila homologue of Arf-GAP GIT1, dGIT, is required ...
ACCEPT
Summary: Direct localization evidence showing Git in the cytoplasm of embryonic muscle cells. This is a core localization.
Reason: Direct assay evidence from PMID:18996366 showing dGit protein in the cytoplasm of embryonic muscle syncytia.
Supporting Evidence:
PMID:18996366
The dGIT protein is concentrated at the termini of growing myotubes and localizes to muscle attachment sites in late stage embryos
GO:0007525 somatic muscle development
IMP
PMID:18996366
The Drosophila homologue of Arf-GAP GIT1, dGIT, is required ...
ACCEPT
Summary: dGit is required for proper muscle morphogenesis and myotube guidance during embryogenesis. dgit mutants show muscle patterning defects.
Reason: Core developmental function supported by mutant analysis in PMID:18996366. dgit mutant embryos show muscle patterning defects including aberrant targeting in subsets of muscles, particularly ventral oblique muscles VO5 and VO6.
Supporting Evidence:
PMID:18996366
dgit mutant embryos show muscle patterning defects and aberrant targeting in subsets of their muscles
GO:0031252 cell leading edge
IDA
PMID:18996366
The Drosophila homologue of Arf-GAP GIT1, dGIT, is required ...
ACCEPT
Summary: Git localizes to the leading edge of growing myotubes during muscle development. This is a core localization related to Git's role in cell motility and morphogenesis.
Reason: Direct localization evidence from PMID:18996366 showing Git enrichment at the leading edge of growing myotubes, particularly at the base of membrane protrusions.
Supporting Evidence:
PMID:18996366
The dGIT protein is concentrated at the termini of growing myotubes
GO:0035591 signaling adaptor activity
NAS NEW
Summary: Added to align core_functions with existing annotations.
Reason: Core function term not present in existing_annotations.
GO:0110020 regulation of actomyosin structure organization
NAS NEW
Summary: Added to align core_functions with existing annotations.
Reason: Core function term not present in existing_annotations.
TEMP:dPix-Git-PAK_complex dPix-Git-PAK complex
NAS NEW
Summary: Added to align core_functions with existing annotations.
Reason: Core function complex term not present in existing_annotations.

Core Functions

Git stimulates GTP hydrolysis on Arf79F (ARF1 ortholog), inactivating ARF signaling to promote Hippo pathway activation and regulate membrane trafficking.

Git acts as a signaling adaptor at focal adhesion-like structures, scaffolding the dPix-Git-PAK complex via its paxillin-binding domain to limit myosin II activation and maintain epithelial organization during morphogenesis.

Supporting Evidence:
  • PMID:25484297
    Pix and Git influence activity of the Hpo kinase by acting as a scaffold complex, rather than enzymes
  • file:DROME/git/git-deep-research-falcon.md
    dPix-Git localizes to basal, focal-adhesion-like structures and leading edges; Git's paxillin-binding domain mediates targeting; the complex limits myosin II activity and ensures monolayer integrity

Git scaffolds Hpo dimerization and autophosphorylation as part of the Lgl-Vap33-RtGEF-Git-Arf79F module, activating Hippo signaling to restrict organ growth.

Git localizes to the presynaptic active zone cytomatrix and associates with stoned B to facilitate synaptic vesicle recycling at the neuromuscular junction.

References

Gene Ontology annotation through association of InterPro records with GO terms
Annotation inferences using phylogenetic trees
Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
Combined Automated Annotation using Multiple IEA Methods
GAPs galore! A survey of putative Ras superfamily GTPase activating proteins in man and Drosophila.
  • Git (CG16728) is computationally identified as encoding an ARF-GAP based on conserved domain analysis in a systematic survey of Drosophila and human GAP genes.
    "To facilitate genetic analysis, I surveyed Drosophila and human sequence databases for genes predicting proteins related to GAPs for Ras superfamily members. Remarkably, close to 0.5% of genes in both species (173 human and 64 Drosophila genes) predict proteins related to GAPs for Arf, Rab, Ran, Rap, Ras, Rho, and Sar family GTPases."
A protein interaction map of Drosophila melanogaster.
  • Git interacts with RtGEF (dPix) in a high-throughput two-hybrid screen of the Drosophila proteome, supporting the conserved Pix-Git protein complex.
    "A two-hybrid-based protein-interaction map of the fly proteome. A total of 10,623 predicted transcripts were isolated and screened against standard and normalized complementary DNA libraries to produce a draft map of 7048 proteins and 20,405 interactions... The network recapitulated known pathways, extended pathways, and uncovered previously unknown pathway components."
The Drosophila homologue of Arf-GAP GIT1, dGIT, is required for proper muscle morphogenesis and guidance during embryogenesis.
  • dGIT is a GTPase-activating protein for ARF family members that integrates signaling pathways controlling cytoskeletal organization and cell motility.
    "GIT1-like proteins are GTPase-activating proteins (GAPs) for Arfs and interact with a variety of signaling molecules to function as integrators of pathways controlling cytoskeletal organization and cell motility."
  • dGIT is required for proper muscle morphogenesis and myotube guidance during embryogenesis.
    "we describe the characterization of a Drosophila homologue of GIT1, dGIT, and show that it is required for proper muscle morphogenesis and myotube guidance in the fly embryo."
  • dGIT protein localizes to the leading edge of growing myotubes and to muscle attachment sites.
    "The dGIT protein is concentrated at the termini of growing myotubes and localizes to muscle attachment sites in late stage embryos."
  • dgit mutant embryos show muscle patterning defects and aberrant targeting in subsets of muscles.
    "dgit mutant embryos show muscle patterning defects and aberrant targeting in subsets of their muscles."
  • dGIT is required for proper localization of dPak to myotube termini and forms a complex with dPak in the presence of dPIX.
    "dgit mutant muscles fail to localize the p21-activated kinase, dPak, to their termini. dPak and dGIT form a complex in the presence of dPIX and dpak mutant embryos show similar muscle morphogenesis and targeting phenotypes to that of dgit."
A presynaptic role for the cytomatrix protein GIT in synaptic vesicle recycling.
  • GIT is a component of the active zone (AZ)-associated cytomatrix at presynaptic terminals.
    "Here, we identify the scaffold G protein coupled receptor kinase 2 interacting (GIT) protein as a component of the AZ-associated cytomatrix and as a regulator of SV endocytosis."
  • GIT directly associates with the endocytic adaptor stonin 2/stoned B, linking the active zone cytomatrix to endocytic machinery.
    "GIT1 and its D. melanogaster ortholog, dGIT, are shown to directly associate with the endocytic adaptor stonin 2/stoned B."
  • In dgit mutants, stoned B and synaptotagmin levels are reduced and stoned B is partially mislocalized from the presynapse.
    "In Drosophila dgit mutants, stoned B and synaptotagmin levels are reduced and stoned B is partially mislocalized."
  • dgit mutants show morphological and functional defects in synaptic vesicle recycling.
    "Moreover, dgit mutants show morphological and functional defects in SV recycling. These data establish a presynaptic role for GIT in SV recycling and suggest a connection between the AZ cytomatrix and the endocytic machinery."
The GTPase regulatory proteins Pix and Git control tissue growth via the Hippo pathway.
  • Pix and Git were identified as prominent Hippo (Hpo) kinase interactors through proteomics.
    "we used proteomics to identify proteins that bind to the Hippo (Hpo) kinase. Prominent among these were PAK-interacting exchange factor (known as Pix or RtGEF) and G-protein-coupled receptor kinase-interacting protein (Git)."
  • Git is the single Drosophila melanogaster homolog of mammalian GIT1 and GIT2 proteins.
    "Git is the single Drosophila melanogaster homolog of the mammalian GIT1 and GIT2 proteins, which were originally identified in the search for molecules that interact with G-protein-coupled receptor kinases."
  • Pix and Git form an oligomeric scaffold to facilitate sterile 20-like kinase activation.
    "Pix and Git form an oligomeric scaffold to facilitate sterile 20-like kinase activation and have also been linked to GTPase regulation."
  • Pix and Git regulate Hippo-pathway-dependent tissue growth in parallel to the known upstream regulator Fat cadherin.
    "We show that Pix and Git regulate Hippo-pathway-dependent tissue growth in D. melanogaster and that they do this in parallel to the known upstream regulator Fat cadherin."
  • Pix and Git act as a scaffold complex (not enzymes) to promote Hpo dimerization and autophosphorylation of Hpo's activation loop.
    "Pix and Git influence activity of the Hpo kinase by acting as a scaffold complex, rather than enzymes, and promote Hpo dimerization and autophosphorylation of Hpo's activation loop."
A Critical Role of GIT1 in Vertebrate and Invertebrate Brain Development.
  • dGit shows remarkable conservation with mammalian Git1 both structurally and functionally, forming a signaling complex with dPix and dPak.
    "dGit, a Drosophila ortholog of Git1, shows remarkable conservation with mammalian Git1 both structurally and functionally. dGit forms signaling complex with dPix and dPak, and the dGit-dPix-dPak signaling pathway plays an essential role for the development in Drosophila."
  • Adult dGit mutants exhibit severely decreased central brain size, consistent with mammalian Git1 knockout phenotypes.
    "Consistent with Git1-/- mice, dGitex21C Drosophila mutants also exhibited severely decreased central brain size"
  • dGit deletion significantly affects mushroom body development, with the most common defect being early termination of one alpha-lobe (58%).
    "Moreover, the development of alpha- or/and beta-lobe of the mushroom body, which is known to be important for learning and memory in Drosophila [30], was significantly affected by the deletion of dGit"
  • dGit regulates the subcellular localization and activation of the dPix-Rac-dPak signaling complex, and its dysregulation causes brain size reduction and abnormal mushroom body development.
    "subcellular localization and activation of the dPix-Rac-dPak signaling complex is modulated by dGit, and dysregultion of this signaling complex causes severe defects, leading to brain size reduction and abnormal mushroom body development."
  • GIT1 plays a conserved and critical role in brain development across invertebrates and vertebrates.
    "severe developmental deficits shown in Git1-/- mice as well as adult dGit1ex21C Drosophila mutants indicate the conserved and critical role of GIT1 in brain development."
The Drosophila tumour suppressor Lgl and Vap33 activate the Hippo pathway through a dual mechanism.
  • Vap33 physically and genetically interacts with Git, which binds to Hpo and is involved in Hippo pathway activation.
    "Vap33 physically and genetically interacts with the actin cytoskeletal regulators RtGEF (Pix) and Git, which also bind to the Hippo protein (Hpo) and are involved in the activation of the Hippo pathway."
  • Lgl activates the Hippo pathway via Vap33 through a mechanism involving RtGEF, Git, and Arf79F.
    "Altogether, our data suggest that Lgl acts via Vap33 to activate the Hippo pathway by a dual mechanism: (1) through interaction with RtGEF, Git and Arf79F, and (2) through interaction and inhibition of the V-ATPase, thereby controlling epithelial tissue growth."
  • Git knockdown rescues reduced Hippo pathway target gene expression in Vha68-2 mutant clones, demonstrating Git's role in Hippo pathway regulation.
    "Git knockdown rescues the reduced Hippo pathway target gene expression in Vha68-2 mutant clones"
  • Vap33, Lgl, RtGEF, Git, Arf79F, and Hpo form a protein interaction network that regulates the Hippo pathway.
    "Vap33 and Lgl form a protein interaction network with RtGEF, Git, Arf79F and Hpo"
Next-generation Drosophila protein interactome map and its functional implications.
  • Git interactions were identified in the next-generation Drosophila protein interactome map (DPIM2) using affinity purification-mass spectrometry, confirming its role in protein complexes.
    "We describe a next-generation Drosophila protein interaction map-"DPIM2"-established from affinity purification-mass spectrometry of 5,805 baits, covering the largest fraction of the Drosophila proteome"
file:DROME/git/git-deep-research-falcon.md
Deep research report on Git

Deep Research

Falcon

(git-deep-research-falcon.md)
this with annotations you find in gene/protein databases, but these can be outdated or inaccurate. Falcon Edison Scientific Literature 25 citations 2025-12-23T00:33:11.062059

The research report should be a detailed narrative explaining the function, biological processes, and localization of the gene product. Citations should be given for all claims.

You should prioritize authoritative reviews and primary scientific literature when conducting research. You can supplement
this with annotations you find in gene/protein databases, but these can be outdated or inaccurate.

We are specifically interested in the primary function of the gene - for enzymes, what reaction is catalyzed, and what is the substrate specificity? For transporters, what is the substrate? For structural proteins or adapters, what is the broader structural role? For signaling molecules, what is the role in the pathway.

We are interested in where in or outside the cell the gene product carries out its function.

We are also interested in the signaling or biochemical pathways in which the gene functions. We are less interested in broad pleiotropic effects, except where these elucidate the precise role.

Include evidence where possible. We are interested in both experimental evidence as well as inference from structure, evolution, or bioinformatic analysis. Precise studies should be prioritized over high-throughput, where available.

Title: Functional Annotation of Drosophila Git (CG16728; UniProt Q95RG8): ARF-GAP scaffolding with dPix–PAK at integrin-linked adhesions and emerging roles in Hippo signaling

Abstract
Git (CG16728) in Drosophila melanogaster encodes an ARF GTPase-activating protein that scaffolds with the Rho-family GEF dPix and the serine/threonine kinase PAK at focal-adhesion-like sites. In epithelia, the dPix–Git complex localizes basally and modulates myosin II to maintain tissue architecture; in developing muscles, integrin→Git→PAK signaling suppresses filopodia during muscle–tendon attachment. Recent work implicates a Vap33–RtGEF(dPix)–Git–Arf79F module in activating Hippo signaling and coordinating with V-ATPase-dependent endolysosomal control. This report synthesizes function, localization, pathway integration, and recent developments (with emphasis on 2023) with quantitative evidence and direct citations.

Identity verification and gene/protein context
- Gene/protein match: Git corresponds to Drosophila dGIT/CG16728 and functions as an ARF GTPase-activating protein that forms a conserved PIX(dPix)–GIT–PAK complex; Drosophila studies use endogenous tags and functional genetics to define Git’s role and targeting (via a paxillin-binding C-terminus) to basal focal-adhesion-like structures (May 22, 2019; PLOS Genetics) (dent2019thedpixgitcomplex pages 2-4, dent2019thedpixgitcomplex pages 13-14).
- Organism: All experimental evidence cited is in Drosophila melanogaster (egg chamber epithelium, embryonic/larval tissues, developing muscles) (dent2019thedpixgitcomplex pages 8-10, dent2019thedpixgitcomplex pages 6-8, richier2018integrinsignalingdownregulates pages 6-8, dent2019thedpixgitcomplex pages 10-13).
- Domains/complex features supported in Drosophila literature: ARF-GAP family assignment; paxillin-binding domain (PBD) in Git’s C-terminus required for basal/focal targeting; recruitment of dPix and PAK into a functional module downstream of integrins (2018–2019 primary literature) (dent2019thedpixgitcomplex pages 13-14, richier2018integrinsignalingdownregulates pages 6-8, dent2019thedpixgitcomplex pages 16-17, dent2019thedpixgitcomplex pages 10-13).

Key concepts and definitions (current understanding)
- ARF GTPase-activating protein (ARF-GAP): Proteins that stimulate GTP hydrolysis on ARF small GTPases to inactivate them. Git is an ARF-GAP that scaffolds with dPix (Rho-family GEF) and PAK to coordinate adhesion and cytoskeletal signaling in vivo (dent2019thedpixgitcomplex pages 2-4, dent2019thedpixgitcomplex pages 27-28, dent2019thedpixgitcomplex pages 16-17).
- PIX–GIT–PAK module: A conserved adhesion-localized complex. In Drosophila epithelia, Git targets the complex basally via a paxillin-binding domain, and dPix recruits/activates PAK to temper myosin II contractility and preserve epithelial organization (PLOS Genetics, 2019; DOI: https://doi.org/10.1371/journal.pgen.1008083) (dent2019thedpixgitcomplex pages 6-8, dent2019thedpixgitcomplex pages 2-4, dent2019thedpixgitcomplex pages 16-17).
- Integrin-linked adhesion signaling: In developing muscles, integrin signaling relies on Git to recruit PAK; Git/PAK act downstream of integrins to suppress filopodia as myotubes establish tendon attachment (Journal of Cell Science, Aug 2018; DOI: https://doi.org/10.1242/jcs.217133) (richier2018integrinsignalingdownregulates pages 6-8, richier2018integrinsignalingdownregulates pages 8-11).
- Hippo pathway connection: A 2023 preprint identifies Vap33–RtGEF(dPix)–Git–Arf79F interactions that stimulate Hippo signaling, with genetic evidence placing Git in a module that counteracts Arf79F (ARF1 ortholog) and coordinates with V-ATPase-driven vesicle acidification (bioRxiv, July 10, 2023; DOI: https://doi.org/10.1101/2023.07.10.548302) (portela2023thedrosophilatumour pages 1-4, portela2023thedrosophilatumour pages 8-11, portela2023thedrosophilatumour pages 11-14, portela2023thedrosophilatumour pages 25-28).

Recent developments and latest research (priority 2023–2024)
- Hippo activation via Vap33–RtGEF–Git–Arf79F: AP-MS in embryos showed Vap33 binds RtGEF (dPix) and Git as high-confidence interactors; co-IPs confirm Vap33–RtGEF and Vap33–Hpo associations; in situ proximity ligation assays (PLAs) detect Git–Vap33, Git–Arf79F, Arf79F–Hpo proximity in larval epithelia. Functionally, Vap33 overexpression rescues elevated Diap1 in RtGEF mutant clones; Git RNAi rescues reduced Diap1 in Vha68-2 (V-ATPase) mutants; Arf79F knockdown rescues lgl mutant Hippo defects. Model: Lgl/Vap33 promote RtGEF/Git to restrain Arf79F, thereby activating Hpo (bioRxiv, 2023; URL above; posted July 10, 2023) (portela2023thedrosophilatumour pages 1-4, portela2023thedrosophilatumour pages 8-11, portela2023thedrosophilatumour pages 11-14, portela2023thedrosophilatumour pages 25-28).
- Pathway crosstalk with V-ATPase: V-ATPase activity negatively regulates Hippo signaling (reduced Yki nuclear export/target repression). Vap33 activates Hippo and counteracts V-ATPase; Git genetically modifies Hippo output in the V-ATPase mutant context (bioRxiv, 2023) (portela2023thedrosophilatumour pages 4-8, portela2023thedrosophilatumour pages 11-14, portela2023thedrosophilatumour pages 21-25).

Current applications and real-world implementations
- Epithelial morphogenesis assays: Endogenous tagging of dpix and git, live/confocal imaging, and quantitative morphometrics/pMRLC staining in egg chambers provide a tractable system to interrogate adhesion–cytoskeletal control of tissue architecture and myosin regulation in vivo (PLOS Genetics, 2019) (dent2019thedpixgitcomplex pages 8-10, dent2019thedpixgitcomplex pages 6-8, dent2019thedpixgitcomplex pages 10-13).
- Muscle–tendon attachment model: Quantitative time-lapse analysis of filopodial dynamics in LT myotubes under integrin, Git, and Pak perturbations offers a live model for adhesion-dependent protrusion control (J Cell Sci, 2018) (richier2018integrinsignalingdownregulates pages 6-8, richier2018integrinsignalingdownregulates pages 8-11).
- Hippo signaling readouts: Eye-disc mosaic clone systems measuring Diap1 and ex-lacZ, combined with AP-MS/PLA, enable in vivo mapping of Git-centered complexes that tune growth signaling (bioRxiv, 2023) (portela2023thedrosophilatumour pages 4-8, portela2023thedrosophilatumour pages 8-11, portela2023thedrosophilatumour pages 18-21).

Expert opinions and analysis from authoritative sources
- Adhesion-scaffold perspective: Primary in vivo evidence supports Git as a paxillin-directed ARF-GAP scaffold that positions dPix and PAK at focal-adhesion-like domains to modulate actomyosin and morphogenesis; the necessity of Git’s C-terminal paxillin-binding domain for basal targeting underscores conserved adhesion logic (PLOS Genetics, 2019) (dent2019thedpixgitcomplex pages 13-14, dent2019thedpixgitcomplex pages 16-17, dent2019thedpixgitcomplex pages 10-13).
- Signaling integration: 2018–2019 studies establish Git at the convergence of integrin adhesions, Rho-family signaling, and PAK-mediated actin regulation; 2023 extends this to growth control via Hippo, implicating ARF GTPases (Arf79F) and endolysosomal acidification (V-ATPase) in Git-centered control nodes (richier2018integrinsignalingdownregulates pages 6-8, dent2019thedpixgitcomplex pages 16-17, portela2023thedrosophilatumour pages 1-4, portela2023thedrosophilatumour pages 11-14).

Relevant statistics and data from recent studies
- Epithelial myosin regulation (egg chamber): dpix or git loss increases phospho-MRLC (pMRLC) intensity at basal membranes by approximately two-fold and also elevates apical pMRLC (~1.5–2-fold), correlating with lateral junction collapse and multilayering; reducing RhoGEF2 dosage rescues egg production and morphology (PLOS Genetics, 2019; DOI above) (dent2019thedpixgitcomplex pages 8-10, dent2019thedpixgitcomplex pages 6-8).
- Localization: Endogenous dpix-Venus and git-tRFP co-localize basally in polarized, filament-like patterns; deletion of Git’s paxillin-binding C-terminus abolishes basal enrichment, demonstrating the targeting mechanism (PLOS Genetics, 2019) (dent2019thedpixgitcomplex pages 10-13, dent2019thedpixgitcomplex pages 16-17).
- Muscle filopodia suppression: Integrin diβ gain-of-function prematurely suppresses filopodia at stage 15, but this suppression fails in Git or Pak maternal+zygotic mutants (quantified filopodia counts and lengths), placing Git/PAK downstream of integrins (J Cell Sci, Aug 2018; DOI above) (richier2018integrinsignalingdownregulates pages 6-8, richier2018integrinsignalingdownregulates pages 8-11).
- Hippo pathway quantification: In eye discs, Vha68-2 knockdown reduces ex-lacZ (Yki target) and Yki levels; Vap33 overexpression reduces Diap1; Git RNAi rescues Diap1 reduction in Vha68-2 mutants; Arf79F RNAi or Sec71DN rescues elevated Diap1 in lgl mutants (bioRxiv, 2023) (portela2023thedrosophilatumour pages 4-8, portela2023thedrosophilatumour pages 11-14, portela2023thedrosophilatumour pages 25-28).

Mechanistic function, pathways, and localization of Git
- Biochemical function and substrate inference: Git is an ARF-GAP; mammalian orthologs inactivate ARF1. In Drosophila, genetic and proximity data connect Git to Arf79F (ARF1 ortholog) and Hpo, supporting a model where Git restrains Arf79F to promote Hippo activation; this is bolstered by the observation that Arf79F knockdown reduces Diap1 and is epistatic to lgl (bioRxiv, 2023). While direct in vivo ARF-GAP catalytic assays for Drosophila Git substrates are not presented in these studies, the genetic and interaction data fit ARF1/Arf79F as the physiologic target class (portela2023thedrosophilatumour pages 8-11, portela2023thedrosophilatumour pages 11-14).
- Adhesion and cytoskeletal control: In epithelia, dPix–Git localizes to basal, focal-adhesion-like structures and leading edges; Git’s paxillin-binding domain mediates targeting; the complex limits myosin II activity and ensures monolayer integrity and proper egg chamber elongation (PLOS Genetics, 2019) (dent2019thedpixgitcomplex pages 10-13, dent2019thedpixgitcomplex pages 16-17).
- Integrin-mediated protrusion control: In developing muscles, Git/PAK execute integrin signals to terminate exploratory filopodia as attachments form, linking adhesion maturation to actin remodeling (J Cell Sci, 2018) (richier2018integrinsignalingdownregulates pages 6-8, richier2018integrinsignalingdownregulates pages 8-11).
- Hippo growth control: RtGEF(dPix)–Git associates with Hpo in a Vap33-dependent network; Git modulates Hippo outputs alongside V-ATPase activity, positioning Git at the interface of adhesion-cytoskeletal cues and growth control (bioRxiv, 2023) (portela2023thedrosophilatumour pages 1-4, portela2023thedrosophilatumour pages 8-11, portela2023thedrosophilatumour pages 11-14, portela2023thedrosophilatumour pages 25-28).

Open areas and cautions
- Direct catalytic measurements in fly tissues (ARF-GAP activity and ARF substrate specificity) remain to be demonstrated in vivo in Drosophila; current evidence is genetic, localization, and interaction-based, with inference from mammalian GIT–ARF1 relationships (portela2023thedrosophilatumour pages 8-11, portela2023thedrosophilatumour pages 11-14).
- Tissue breadth: Strong in vivo evidence exists for follicular epithelium and muscle–tendon contexts; synaptic roles for Git specifically were not directly documented in the provided evidence set, although the dPix–Git–PAK axis is broadly conserved and has been linked to synaptic biology in other systems (dent2019thedpixgitcomplex pages 28-29).

Supporting artifact summarizing key findings
| Aspect | Finding / Claim | Tissue / Cell context | Experimental evidence (brief methods / metrics) | Partners / Pathway | Date & Venue | URL / DOI | Citation ID(s) |
|---|---|---|---|---|---:|---|---|
| Identity / complex (GIT as ARF GAP; PIX/PAK; paxillin targeting) | Git (CG16728, dGIT) is an ARF GTPase-activating protein that forms a conserved PIX–GIT scaffold with PIX/dPix and recruits PAK; Git C-terminal paxillin‑binding domain (PBD) is required for basal/focal targeting. | Drosophila (general; epithelial and developmental contexts) | Endogenous CRISPR-tagging, transgenes, localisation and domain-deletion (ΔPBD) analysis showing loss of basal targeting when PBD deleted; biochemical/interaction references. | dPix (PIX), PAK, paxillin, integrin-linked adhesome | May 22, 2019 — PLOS Genetics (Dent et al., 2019) | https://doi.org/10.1371/journal.pgen.1008083 | (dent2019thedpixgitcomplex pages 2-4, dent2019thedpixgitcomplex pages 13-14, dent2019thedpixgitcomplex pages 27-28) |
| Basal / focal-adhesion-like localization in follicular epithelium | dPix–Git complex is predominantly basally enriched on filament-like structures and at leading edges of migrating follicle cells; Git directs dPix localisation via paxillin-binding. | Drosophila follicular epithelium (egg chamber) | Live imaging and confocal of CRISPR-tagged dpix-Venus and git-tRFP; planar-polarised intensity measurements and mutant clones show loss of basal enrichment in git mutants or ΔPBD constructs. | Focal-adhesion-like sites; integrin → paxillin targeting | May 22, 2019 — PLOS Genetics | https://doi.org/10.1371/journal.pgen.1008083 | (dent2019thedpixgitcomplex pages 10-13, dent2019thedpixgitcomplex pages 16-17) |
| Regulation of myosin and epithelial morphogenesis | dPix–Git limits non-muscle myosin II activation; dpix/git mutants show elevated pMRLC (basal ~2×; apical ~1.5–2×), lateral junction contraction, multilayering and defective egg chamber elongation; reducing myosin activators rescues phenotypes. | Follicular epithelium (egg chambers) | Mosaic clone analysis, pMRLC immunostaining with quantitative pixel‑intensity measurements; genetic suppression (rhoGEF2 heterozygosity) rescues egg production/morphology. | Pak (antagonises myosin), Rho pathway (rhoGEF2, rho1) | May 22, 2019 — PLOS Genetics | https://doi.org/10.1371/journal.pgen.1008083 | (dent2019thedpixgitcomplex pages 8-10, dent2019thedpixgitcomplex pages 6-8, dent2019thedpixgitcomplex pages 27-28) |
| Integrin → Git → Pak suppression of filopodia (muscle–tendon attachment) | Integrin signalling activates Git to recruit Pak and thereby downregulate filopodia at myotube tips; loss of Git or Pak prevents integrin-induced filopodia suppression producing excessive/long filopodia. | Drosophila lateral transverse (LT) muscles / myotube tips during muscle–tendon attachment | Genetic loss-of-function (maternal+zygotic Git excision allele, pak mutants), live time‑lapse imaging and quantitative filopodia counts/length; integrin gain-of-function (diβ) fails to suppress filopodia in Git or Pak mutants. | Integrin → Git → PIX/PAK axis; focal-adhesion elements (paxillin) | Aug 2018 — Journal of Cell Science (Richier et al., 2018) | https://doi.org/10.1242/jcs.217133 | (richier2018integrinsignalingdownregulates pages 6-8, richier2018integrinsignalingdownregulates pages 13-16, richier2018integrinsignalingdownregulates pages 8-11) |
| Hippo pathway regulation via Vap33–RtGEF(dPix)–Git–Arf79F module (2023 preprint) | Vap33 physically associates with RtGEF (Pix) and Git and with Hpo; Arf79F (Arf1) interacts with Hpo and Git; Vap33 overexpression rescues elevated Diap1 in RtGEF mutants; Git knockdown rescues Vha68-2 (V-ATPase) phenotypes; Arf79F knockdown rescues lgl mutant Hippo defects — model: Lgl/Vap33 → RtGEF/Git inhibits Arf79F and activates Hpo. | Drosophila embryonic and larval epithelia, eye discs; in vivo AP‑MS, S2 cells, larval tissues | AP‑MS from Vap33‑YFP embryos (SAINT analyses), co‑IP in S2 cells, in situ PLA in larval tissues, genetic mosaics measuring Diap1 / ex‑lacZ (Yki target) and adult eye phenotypes; rescue assays (Vap33 o/e, Git RNAi, Arf79F RNAi/Sec71DN). | Vap33, RtGEF/dPix, Git, Arf79F (Arf1), Hpo (Hippo pathway); V‑ATPase interaction (Vha68‑2) | bioRxiv preprint — July 10, 2023 (Portela et al., 2023) | https://doi.org/10.1101/2023.07.10.548302 | (portela2023thedrosophilatumour pages 1-4, portela2023thedrosophilatumour pages 8-11, portela2023thedrosophilatumour pages 11-14, portela2023thedrosophilatumour pages 18-21, portela2023thedrosophilatumour pages 25-28) |
| Genetic interactions / rescues (rhoGEF2, Vha68‑2, Arf79F) | Heterozygosity for rhoGEF2 partially rescues dpix/git egg production defects; Git knockdown partially rescues reduced Diap1 in Vha68‑2 mutant clones; Arf79F knockdown or Sec71DN expression rescues elevated Diap1 and adult-eye defects in lgl mutants. | Egg chambers, eye imaginal discs (mosaic clones) | Genetic interaction tests (mosaic clones, RNAi, dominant negatives), Diap1 / ex‑lacZ pixel‑intensity quantification, adult-eye phenotype scoring. | RhoGEF2 / Rho1 (myosin activators), V‑ATPase (Vha68‑2), Arf79F (Arf1) | 2019 (Dent et al.) and 2023 (Portela et al., preprint) | Dent DOI: https://doi.org/10.1371/journal.pgen.1008083; Portela DOI: https://doi.org/10.1101/2023.07.10.548302 | (dent2019thedpixgitcomplex pages 8-10, dent2019thedpixgitcomplex pages 16-17, portela2023thedrosophilatumour pages 11-14, portela2023thedrosophilatumour pages 25-28) |
| Quantitative data (selected) | pMRLC: ~2‑fold increase at basal membranes and ~1.5–2‑fold apical increase in dpix/git mutants; Vha68‑2 knockdown reduces ex‑lacZ (Yki reporter) and Yki nuclear staining; Vap33 o/e reduces Diap1 levels in clones (quantified pixel intensities; ANOVA p‑values reported). | Follicular epithelium; eye discs | pMRLC and Diap1/ex‑lacZ pixel‑intensity quantification from confocal images; statistical tests (D'Agostino‑Pearson, t tests, ANOVA with Bonferroni). | Myosin (pMRLC), Hippo readouts (Diap1, ex‑lacZ), V‑ATPase manipulations | Dent et al. 2019 (pMRLC quant); Portela et al. 2023 (ex‑lacZ / Diap1 quant; reported p‑values) | Dent DOI: https://doi.org/10.1371/journal.pgen.1008083; Portela DOI: https://doi.org/10.1101/2023.07.10.548302 | (dent2019thedpixgitcomplex pages 8-10, portela2023thedrosophilatumour pages 1-4, portela2023thedrosophilatumour pages 8-11) |

Table: A concise, evidence‑linked summary table of major experimental findings about Drosophila Git (CG16728, UniProt Q95RG8), including identity/domains, localization, functional roles, pathways, quantitative phenotypes, and primary citations from the provided context.

References with URLs and dates
- Dent LG et al. The dPix–Git complex is essential to coordinate epithelial morphogenesis and regulate myosin during Drosophila egg chamber development. PLOS Genetics. Published May 22, 2019. DOI: https://doi.org/10.1371/journal.pgen.1008083 (dent2019thedpixgitcomplex pages 8-10, dent2019thedpixgitcomplex pages 6-8, dent2019thedpixgitcomplex pages 2-4, dent2019thedpixgitcomplex pages 10-13, dent2019thedpixgitcomplex pages 13-14, dent2019thedpixgitcomplex pages 16-17).
- Richier B et al. Integrin signaling downregulates filopodia during muscle–tendon attachment. Journal of Cell Science. Published Aug 2018. DOI: https://doi.org/10.1242/jcs.217133 (richier2018integrinsignalingdownregulates pages 6-8, richier2018integrinsignalingdownregulates pages 13-16, richier2018integrinsignalingdownregulates pages 8-11).
- Portela M et al. The Drosophila Tumour Suppressor Lgl and Vap33 activate the Hippo pathway by a dual mechanism, involving RtGEF/Git/Arf79F and inhibition of the V-ATPase. bioRxiv preprint. Posted July 10, 2023. DOI: https://doi.org/10.1101/2023.07.10.548302 (portela2023thedrosophilatumour pages 1-4, portela2023thedrosophilatumour pages 4-8, portela2023thedrosophilatumour pages 8-11, portela2023thedrosophilatumour pages 11-14, portela2023thedrosophilatumour pages 18-21, portela2023thedrosophilatumour pages 21-25, portela2023thedrosophilatumour pages 25-28).

Conclusion
Drosophila Git (CG16728) is a focal-adhesion–targeted ARF-GAP scaffold that partners with dPix and PAK to tune actomyosin and morphogenesis, and it integrates integrin signals to regulate protrusive behavior during muscle–tendon attachment. Emerging 2023 data connect Git to Hippo growth control through a Vap33–RtGEF–Git–Arf79F axis, coordinated with V-ATPase-regulated vesicle acidification. Together, these studies position Git as a key node linking adhesion mechanics, Rho/ARF GTPase signaling, and tissue growth control in vivo (dent2019thedpixgitcomplex pages 6-8, richier2018integrinsignalingdownregulates pages 6-8, portela2023thedrosophilatumour pages 11-14).

References

  1. (dent2019thedpixgitcomplex pages 2-4): Lucas G. Dent, Samuel A. Manning, Benjamin Kroeger, Audrey M. Williams, Abdul Jabbar Saiful Hilmi, Luke Crea, Shu Kondo, Sally Horne-Badovinac, and Kieran F. Harvey. The dpix-git complex is essential to coordinate epithelial morphogenesis and regulate myosin during drosophila egg chamber development. PLOS Genetics, 15:e1008083, May 2019. URL: https://doi.org/10.1371/journal.pgen.1008083, doi:10.1371/journal.pgen.1008083. This article has 11 citations and is from a domain leading peer-reviewed journal.

  2. (dent2019thedpixgitcomplex pages 13-14): Lucas G. Dent, Samuel A. Manning, Benjamin Kroeger, Audrey M. Williams, Abdul Jabbar Saiful Hilmi, Luke Crea, Shu Kondo, Sally Horne-Badovinac, and Kieran F. Harvey. The dpix-git complex is essential to coordinate epithelial morphogenesis and regulate myosin during drosophila egg chamber development. PLOS Genetics, 15:e1008083, May 2019. URL: https://doi.org/10.1371/journal.pgen.1008083, doi:10.1371/journal.pgen.1008083. This article has 11 citations and is from a domain leading peer-reviewed journal.

  3. (dent2019thedpixgitcomplex pages 8-10): Lucas G. Dent, Samuel A. Manning, Benjamin Kroeger, Audrey M. Williams, Abdul Jabbar Saiful Hilmi, Luke Crea, Shu Kondo, Sally Horne-Badovinac, and Kieran F. Harvey. The dpix-git complex is essential to coordinate epithelial morphogenesis and regulate myosin during drosophila egg chamber development. PLOS Genetics, 15:e1008083, May 2019. URL: https://doi.org/10.1371/journal.pgen.1008083, doi:10.1371/journal.pgen.1008083. This article has 11 citations and is from a domain leading peer-reviewed journal.

  4. (dent2019thedpixgitcomplex pages 6-8): Lucas G. Dent, Samuel A. Manning, Benjamin Kroeger, Audrey M. Williams, Abdul Jabbar Saiful Hilmi, Luke Crea, Shu Kondo, Sally Horne-Badovinac, and Kieran F. Harvey. The dpix-git complex is essential to coordinate epithelial morphogenesis and regulate myosin during drosophila egg chamber development. PLOS Genetics, 15:e1008083, May 2019. URL: https://doi.org/10.1371/journal.pgen.1008083, doi:10.1371/journal.pgen.1008083. This article has 11 citations and is from a domain leading peer-reviewed journal.

  5. (richier2018integrinsignalingdownregulates pages 6-8): Benjamin Richier, Yoshiko Inoue, Ulrich Dobramysl, Jonathan Friedlander, Nicholas H. Brown, and Jennifer L. Gallop. Integrin signaling downregulates filopodia during muscle–tendon attachment. Journal of Cell Science, Aug 2018. URL: https://doi.org/10.1242/jcs.217133, doi:10.1242/jcs.217133. This article has 18 citations and is from a domain leading peer-reviewed journal.

  6. (dent2019thedpixgitcomplex pages 10-13): Lucas G. Dent, Samuel A. Manning, Benjamin Kroeger, Audrey M. Williams, Abdul Jabbar Saiful Hilmi, Luke Crea, Shu Kondo, Sally Horne-Badovinac, and Kieran F. Harvey. The dpix-git complex is essential to coordinate epithelial morphogenesis and regulate myosin during drosophila egg chamber development. PLOS Genetics, 15:e1008083, May 2019. URL: https://doi.org/10.1371/journal.pgen.1008083, doi:10.1371/journal.pgen.1008083. This article has 11 citations and is from a domain leading peer-reviewed journal.

  7. (dent2019thedpixgitcomplex pages 16-17): Lucas G. Dent, Samuel A. Manning, Benjamin Kroeger, Audrey M. Williams, Abdul Jabbar Saiful Hilmi, Luke Crea, Shu Kondo, Sally Horne-Badovinac, and Kieran F. Harvey. The dpix-git complex is essential to coordinate epithelial morphogenesis and regulate myosin during drosophila egg chamber development. PLOS Genetics, 15:e1008083, May 2019. URL: https://doi.org/10.1371/journal.pgen.1008083, doi:10.1371/journal.pgen.1008083. This article has 11 citations and is from a domain leading peer-reviewed journal.

  8. (dent2019thedpixgitcomplex pages 27-28): Lucas G. Dent, Samuel A. Manning, Benjamin Kroeger, Audrey M. Williams, Abdul Jabbar Saiful Hilmi, Luke Crea, Shu Kondo, Sally Horne-Badovinac, and Kieran F. Harvey. The dpix-git complex is essential to coordinate epithelial morphogenesis and regulate myosin during drosophila egg chamber development. PLOS Genetics, 15:e1008083, May 2019. URL: https://doi.org/10.1371/journal.pgen.1008083, doi:10.1371/journal.pgen.1008083. This article has 11 citations and is from a domain leading peer-reviewed journal.

  9. (richier2018integrinsignalingdownregulates pages 8-11): Benjamin Richier, Yoshiko Inoue, Ulrich Dobramysl, Jonathan Friedlander, Nicholas H. Brown, and Jennifer L. Gallop. Integrin signaling downregulates filopodia during muscle–tendon attachment. Journal of Cell Science, Aug 2018. URL: https://doi.org/10.1242/jcs.217133, doi:10.1242/jcs.217133. This article has 18 citations and is from a domain leading peer-reviewed journal.

  10. (portela2023thedrosophilatumour pages 1-4): Marta Portela, Swastik Mukherjee, Sayantanee Paul, John E. La Marca, Linda M. Parsons, Alexey Veraksa, and Helena E. Richardson. The drosophila tumour suppressor lgl and vap33 activate the hippo pathway by a dual mechanism, involving rtgef/git/arf79f and inhibition of the v-atpase. bioRxiv, Jul 2023. URL: https://doi.org/10.1101/2023.07.10.548302, doi:10.1101/2023.07.10.548302. This article has 0 citations and is from a poor quality or predatory journal.

  11. (portela2023thedrosophilatumour pages 8-11): Marta Portela, Swastik Mukherjee, Sayantanee Paul, John E. La Marca, Linda M. Parsons, Alexey Veraksa, and Helena E. Richardson. The drosophila tumour suppressor lgl and vap33 activate the hippo pathway by a dual mechanism, involving rtgef/git/arf79f and inhibition of the v-atpase. bioRxiv, Jul 2023. URL: https://doi.org/10.1101/2023.07.10.548302, doi:10.1101/2023.07.10.548302. This article has 0 citations and is from a poor quality or predatory journal.

  12. (portela2023thedrosophilatumour pages 11-14): Marta Portela, Swastik Mukherjee, Sayantanee Paul, John E. La Marca, Linda M. Parsons, Alexey Veraksa, and Helena E. Richardson. The drosophila tumour suppressor lgl and vap33 activate the hippo pathway by a dual mechanism, involving rtgef/git/arf79f and inhibition of the v-atpase. bioRxiv, Jul 2023. URL: https://doi.org/10.1101/2023.07.10.548302, doi:10.1101/2023.07.10.548302. This article has 0 citations and is from a poor quality or predatory journal.

  13. (portela2023thedrosophilatumour pages 25-28): Marta Portela, Swastik Mukherjee, Sayantanee Paul, John E. La Marca, Linda M. Parsons, Alexey Veraksa, and Helena E. Richardson. The drosophila tumour suppressor lgl and vap33 activate the hippo pathway by a dual mechanism, involving rtgef/git/arf79f and inhibition of the v-atpase. bioRxiv, Jul 2023. URL: https://doi.org/10.1101/2023.07.10.548302, doi:10.1101/2023.07.10.548302. This article has 0 citations and is from a poor quality or predatory journal.

  14. (portela2023thedrosophilatumour pages 4-8): Marta Portela, Swastik Mukherjee, Sayantanee Paul, John E. La Marca, Linda M. Parsons, Alexey Veraksa, and Helena E. Richardson. The drosophila tumour suppressor lgl and vap33 activate the hippo pathway by a dual mechanism, involving rtgef/git/arf79f and inhibition of the v-atpase. bioRxiv, Jul 2023. URL: https://doi.org/10.1101/2023.07.10.548302, doi:10.1101/2023.07.10.548302. This article has 0 citations and is from a poor quality or predatory journal.

  15. (portela2023thedrosophilatumour pages 21-25): Marta Portela, Swastik Mukherjee, Sayantanee Paul, John E. La Marca, Linda M. Parsons, Alexey Veraksa, and Helena E. Richardson. The drosophila tumour suppressor lgl and vap33 activate the hippo pathway by a dual mechanism, involving rtgef/git/arf79f and inhibition of the v-atpase. bioRxiv, Jul 2023. URL: https://doi.org/10.1101/2023.07.10.548302, doi:10.1101/2023.07.10.548302. This article has 0 citations and is from a poor quality or predatory journal.

  16. (portela2023thedrosophilatumour pages 18-21): Marta Portela, Swastik Mukherjee, Sayantanee Paul, John E. La Marca, Linda M. Parsons, Alexey Veraksa, and Helena E. Richardson. The drosophila tumour suppressor lgl and vap33 activate the hippo pathway by a dual mechanism, involving rtgef/git/arf79f and inhibition of the v-atpase. bioRxiv, Jul 2023. URL: https://doi.org/10.1101/2023.07.10.548302, doi:10.1101/2023.07.10.548302. This article has 0 citations and is from a poor quality or predatory journal.

  17. (dent2019thedpixgitcomplex pages 28-29): Lucas G. Dent, Samuel A. Manning, Benjamin Kroeger, Audrey M. Williams, Abdul Jabbar Saiful Hilmi, Luke Crea, Shu Kondo, Sally Horne-Badovinac, and Kieran F. Harvey. The dpix-git complex is essential to coordinate epithelial morphogenesis and regulate myosin during drosophila egg chamber development. PLOS Genetics, 15:e1008083, May 2019. URL: https://doi.org/10.1371/journal.pgen.1008083, doi:10.1371/journal.pgen.1008083. This article has 11 citations and is from a domain leading peer-reviewed journal.

  18. (richier2018integrinsignalingdownregulates pages 13-16): Benjamin Richier, Yoshiko Inoue, Ulrich Dobramysl, Jonathan Friedlander, Nicholas H. Brown, and Jennifer L. Gallop. Integrin signaling downregulates filopodia during muscle–tendon attachment. Journal of Cell Science, Aug 2018. URL: https://doi.org/10.1242/jcs.217133, doi:10.1242/jcs.217133. This article has 18 citations and is from a domain leading peer-reviewed journal.

Citations

  1. dent2019thedpixgitcomplex pages 28-29
  2. dent2019thedpixgitcomplex pages 2-4
  3. dent2019thedpixgitcomplex pages 13-14
  4. dent2019thedpixgitcomplex pages 8-10
  5. dent2019thedpixgitcomplex pages 6-8
  6. richier2018integrinsignalingdownregulates pages 6-8
  7. dent2019thedpixgitcomplex pages 10-13
  8. dent2019thedpixgitcomplex pages 16-17
  9. dent2019thedpixgitcomplex pages 27-28
  10. richier2018integrinsignalingdownregulates pages 8-11
  11. portela2023thedrosophilatumour pages 1-4
  12. portela2023thedrosophilatumour pages 8-11
  13. portela2023thedrosophilatumour pages 11-14
  14. portela2023thedrosophilatumour pages 25-28
  15. portela2023thedrosophilatumour pages 4-8
  16. portela2023thedrosophilatumour pages 21-25
  17. portela2023thedrosophilatumour pages 18-21
  18. richier2018integrinsignalingdownregulates pages 13-16
  19. https://doi.org/10.1371/journal.pgen.1008083
  20. https://doi.org/10.1242/jcs.217133
  21. https://doi.org/10.1101/2023.07.10.548302
  22. https://doi.org/10.1371/journal.pgen.1008083;
  23. https://doi.org/10.1371/journal.pgen.1008083,
  24. https://doi.org/10.1242/jcs.217133,
  25. https://doi.org/10.1101/2023.07.10.548302,

📚 Additional Documentation

Bioreason Rl Predictions

(git-bioreason-rl-predictions.md)

BioReason Chat Export

Exported on March 22, 2026 at 02:12 AM


Organism: Drosophila melanogaster

Sequence:

MCFASSIIEAHRKLFIAPPDLDHSDPATPTISTRSKMPRGKSRLQTEVCGDCGAGDPSWASINRGILLCADCCSVHRSLGRHISIVKSLRQGNWEPSVLNFVNSLNAHGANSVWEHHLLDGSTNSTGGKHVPRWRKPTPKDALHPTKSDFIKAKHVNLTFVLKPSLQDDDDGNGSAGCLEQELSRQLHASVRTSNLETSLRFLVQGADPNYYHEDKLSTPLHMAAKFGQASQIEMLLIYGADVNALDGNGMTPLELARANNHNTIAERLLDAMYDVTDRIITFLGGKKPDHASGRHMIIPDANGADISEQLKIARGKLQLVPNKMFEELVMDLYDEVDRRECEAIWSTSTLNADHATVPFLPANPFLSATRNQGRQKLARFNRAEFTGLLTDVLVDAMRRQNMANLRPMDAPVAGHQSLQSLPYANNSMLLGSFEQGGHDPNLSDDEPIYDPVASDDDYAPVPPMAQQAIVHTPPRSANSHNEMETLRKQLNDYKSEINQLKNVVQMLSSENTQLKSKFSSASNNSVYDEPLRIDLSLSSPDTEHEPLSLPEGGTANGESGSSNDSSNQSTIKRPASMYERRLVPNVAKGNTDIRNTTSMYQMAGDGKPFGEEVKVRSDLVTRRLKELIRAMQPVPEDQKQSIAPHGELIRSAVTDLIALYANLPPNASDPSRETLKLLTRQNILIQHECENLQKAIEADDKQAIQKNTLEVRDCAFHIASAIKTLVLQFY

Thinking Trace

I begin with the InterPro architecture. The N-terminus harbors an ArfGAP catalytic core: IPR001164 (Arf GTPase activating protein domain, residues 32–168) sits within IPR038508 (ArfGAP domain superfamily, residues 31–166) and is reinforced by IPR037278 (ARFGAP/RecO-like zinc finger, residues 46–162). This triad defines a Zn2+-coordinating ArfGAP fold that accelerates GTP hydrolysis on ADP-ribosylation factor (Arf) small GTPases. Immediately downstream, the protein transitions into a modular scaffold. IPR036770 (Ankyrin repeat-containing domain superfamily, residues 82–294) and its internal repeat IPR002110 (Ankyrin repeat, residues 187–278) create elongated helical repeats that mediate high-affinity protein–protein interactions and cargo assembly. The central region contains IPR013724 (GIT, Spa2 homology domain, residues 314–404), a hallmark of GIT-family scaffolds that recruit cytoskeletal and signaling partners. The overall family assignment IPR047161 (ARF GTPase-activating protein Git-like, residues 39–589) and the distal IPR022018 (ARF GTPase-activating protein GIT1, C-terminal domain, residues 612–730) define a canonical GIT1-like architecture: an N-terminal ArfGAP catalytic module followed by ankyrin repeats, an SHD platform, and a GIT1-specific C-terminus that stabilizes assemblies and targets membranes.

This ordered layout causally establishes molecular function. The ArfGAP domain and its zinc finger architecture supply the catalytic chemistry that stimulates GTP hydrolysis on Arf small GTPases; this defines ARF GTPase activator activity (GO:0008065). The ankyrin repeats and SHD domain expand interaction capacity, positioning the catalytic core within larger trafficking and cytoskeletal assemblies. Together, these modules generate a platform that both turns over Arf-GTP and organizes effectors.

From function to process, accelerating Arf GTPase cycles directly controls vesicle budding, uncoating, and cargo sorting along endocytic and recycling routes. The ankyrin–SHD–GIT1C-terminal triad recruits actin regulators and adaptor complexes, coupling membrane traffic to cytoskeletal remodeling. This architecture therefore drives vesicle-mediated transport and endocytic pathway organization; in cellular component terms this maps to soluble pools at membranes but is best captured here as GO:0043226 cytoplasm, consistent with a cytoplasmic scaffold that transiently engages endomembranes.

The cellular context follows. Absence of transmembrane segments and the presence of ankyrin repeats and soluble scaffold domains argue for a soluble cytoplasmic localization where the protein assembles trafficking hubs; thus I infer cytoplasm (GO:0005737) as the principal compartment, matching the operational zone of Arf-regulated endocytosis and recycling endosomes in the cytoplasmic milieu.

Mechanistically, the protein likely binds and inactivates Arf via its N-terminal ArfGAP core, while the ankyrin repeats and SHD domain nucleate complexes that couple membrane trafficking to actin dynamics. I hypothesize interactions with Arf small GTPases (e.g., Arf1/Arf6), clathrin/adaptor assemblies, and GIT-associated partners such as paxillin and PIX/PAFAH1B1-like GEFs, enabling coordinated control of endocytic sorting and cytoskeletal remodeling in Drosophila cells.

Functional Summary

A cytoplasmic scaffold that accelerates GTP hydrolysis on Arf small GTPases and organizes endocytic and recycling pathways in fruit fly cells. Its N-terminal catalytic module drives Arf inactivation, while central ankyrin repeats and a GIT platform assemble multiprotein complexes that couple membrane trafficking to actin remodeling. By positioning catalytic and scaffolding elements in a GIT-like architecture, it coordinates vesicle dynamics and cytoskeletal control from soluble cytoplasmic hubs.

UniProt Summary

May function as a GTPase-activating protein for Arf.

InterPro Domains

  • ArfGAP domain superfamily (IPR038508, homologous_superfamily) — residues 31-166
  • Arf GTPase activating protein (IPR001164, domain) — residues 32-168
  • ARF GTPase-activating protein Git-like (IPR047161, family) — residues 39-589
  • ARFGAP/RecO-like zinc finger (IPR037278, homologous_superfamily) — residues 46-162
  • Ankyrin repeat-containing domain superfamily (IPR036770, homologous_superfamily) — residues 82-294
  • Ankyrin repeat (IPR002110, repeat) — residues 187-278
  • GIT, Spa2 homology (SHD) domain (IPR013724, domain) — residues 314-404
  • ARF GTPase-activating protein GIT1, C-terminal (IPR022018, domain) — residues 612-730

GO Terms

Molecular Function: molecular_function (GO:0003674), binding (GO:0005488), molecular adaptor activity (GO:0060090), protein binding (GO:0005515)

Biological Process: biological_process (GO:0008150), biological regulation (GO:0065007), localization (GO:0051179), positive regulation of biological process (GO:0048518), regulation of biological process (GO:0050789), developmental process (GO:0032502), cellular process (GO:0009987), negative regulation of biological process (GO:0048519), multicellular organismal process (GO:0032501), cellular localization (GO:0051641), regulation of developmental process (GO:0050793), positive regulation of signaling (GO:0023056), anatomical structure development (GO:0048856), multicellular organism development (GO:0007275), positive regulation of response to stimulus (GO:0048584), regulation of cellular process (GO:0050794), regulation of response to stimulus (GO:0048583), establishment of localization (GO:0051234), regulation of signaling (GO:0023051), negative regulation of multicellular organismal process (GO:0051241), regulation of multicellular organismal process (GO:0051239), negative regulation of growth (GO:0045926), negative regulation of developmental process (GO:0051093), regulation of growth (GO:0040008), macromolecule localization (GO:0033036), positive regulation of cellular process (GO:0048522), positive regulation of signal transduction (GO:0009967), muscle structure development (GO:0061061), regulation of cell communication (GO:0010646), head development (GO:0060322), system development (GO:0048731), negative regulation of organ growth (GO:0046621), transport (GO:0006810), animal organ development (GO:0048513), negative regulation of developmental growth (GO:0048640), regulation of signal transduction (GO:0009966), cellular macromolecule localization (GO:0070727), establishment of localization in cell (GO:0051649), regulation of organ growth (GO:0046620), positive regulation of cell communication (GO:0010647), mushroom body development (GO:0016319), regulation of developmental growth (GO:0048638), brain development (GO:0007420), synaptic vesicle cycle (GO:0099504), synaptic vesicle recycling (GO:0036465), nervous system development (GO:0007399), central nervous system development (GO:0007417), positive regulation of intracellular signal transduction (GO:1902533), vesicle-mediated transport (GO:0016192), protein localization (GO:0008104), somatic muscle development (GO:0007525), regulation of intracellular signal transduction (GO:1902531), protein localization to cell junction (GO:1902414), vesicle-mediated transport in synapse (GO:0099003), positive regulation of hippo signaling (GO:0035332), regulation of hippo signaling (GO:0035330), protein localization to synapse (GO:0035418)

Cellular Component: cellular_component (GO:0005575), cellular anatomical entity (GO:0110165), cell leading edge (GO:0031252), intracellular anatomical structure (GO:0005622), organelle (GO:0043226), presynaptic active zone (GO:0048786), presynapse (GO:0098793), cytoplasm (GO:0005737), cell periphery (GO:0071944), cell junction (GO:0030054), presynaptic cytoskeleton (GO:0099569), presynaptic active zone cytoplasmic component (GO:0098831), intracellular organelle (GO:0043229), synapse (GO:0045202), cell cortex (GO:0005938), cytoplasmic region (GO:0099568), non-membrane-bounded organelle (GO:0043228), cortical cytoskeleton (GO:0030863), cytoskeleton of presynaptic active zone (GO:0048788), cell cortex region (GO:0099738), intracellular non-membrane-bounded organelle (GO:0043232), cytoskeleton (GO:0005856)


Generated by BioReason

Bioreason Rl Review

(git-bioreason-rl-review.md)

BioReason-Pro RL Review: git (DROME)

Source: git-bioreason-rl-predictions.md

  • Correctness: 4/5
  • Completeness: 3/5

Functional Summary Review

The BioReason summary states:

A cytoplasmic scaffold that accelerates GTP hydrolysis on Arf small GTPases and organizes endocytic and recycling pathways in fruit fly cells. Its N-terminal catalytic module drives Arf inactivation, while central ankyrin repeats and a GIT platform assemble multiprotein complexes that couple membrane trafficking to actin remodeling. By positioning catalytic and scaffolding elements in a GIT-like architecture, it coordinates vesicle dynamics and cytoskeletal control from soluble cytoplasmic hubs.

This is a solid summary that correctly identifies the dual nature of Git: ARF-GAP catalytic activity and scaffold function. The curated review confirms Git as an "ARF GTPase-activating protein that functions as a multidomain scaffold protein, forming a conserved dPix-Git-PAK complex." The core molecular function of GTPase activator activity (GO:0005096) is well-captured.

Strengths:
- Correctly identifies the ArfGAP catalytic function
- Recognizes the scaffolding role via ankyrin repeats and SHD domain
- Accurately describes coupling of membrane trafficking to cytoskeletal control

Omissions:

  1. Hippo pathway regulation: The curated review identifies positive regulation of Hippo signaling (GO:0035332) as a core function, with Git regulating Arf79F upstream of Hippo (PMID:38240353). This is entirely absent from BioReason's summary.

  2. Synaptic vesicle recycling: The curated review documents Git's role at presynaptic active zones and in synaptic vesicle recycling (PMID:24882013). BioReason mentions "vesicle dynamics" generically but misses the synaptic context.

  3. Brain development: The curated review notes severely decreased central brain size in dGit mutants (PMID:25792865). Not mentioned.

  4. Specific complex: The dPix-Git-PAK complex and paxillin-binding domain-mediated basal targeting are key features documented in the curated review but absent from the summary.

  5. Localization: The curated review places Git at presynaptic active zones, focal adhesion-like structures, and the cell cortex. BioReason only mentions "cytoplasm."

Comparison with interpro2go:

The ai-review.yaml contains two GO_REF:0000002 annotations: brain development (GO:0007420) and regulation of ARF protein signal transduction (GO:0032012). BioReason's summary recapitulates the ARF signal transduction aspect well, essentially matching the interpro2go reasoning. However, it misses the brain development annotation entirely. BioReason adds value by describing the scaffolding function and vesicle trafficking context beyond what interpro2go provides, but does not reach the specific biological contexts (Hippo, synapses, brain development) documented in the curated review.

Notes on thinking trace

The trace provides accurate domain-by-domain analysis. The identification of the ArfGAP-ankyrin-SHD-GIT1C architecture is correct. The hypothesized interactions with "clathrin/adaptor assemblies" and "PIX/PAFAH1B1-like GEFs" show awareness of GIT-family biology, though dPix is not named specifically.

📄 View Raw YAML

---
id: Q95RG8
gene_symbol: Git
aliases: [dGIT, arfgap2, CG16728]
product_type: PROTEIN
status: COMPLETE
taxon:
  id: NCBITaxon:7227
  label: Drosophila melanogaster
description: ARF GTPase-activating protein that functions as a multidomain scaffold
  protein, forming a conserved dPix-Git-PAK complex at focal adhesion-like sites.
  Git stimulates GTP hydrolysis on ARF family GTPases (particularly Arf79F, the fly
  ARF1 ortholog), acts as a molecular adaptor targeting the complex basally via its
  paxillin-binding domain, and regulates actomyosin dynamics, synaptic vesicle recycling,
  and Hippo pathway signaling.
existing_annotations:
  - term:
      id: GO:0045202
      label: synapse
    evidence_type: IBA
    original_reference_id: GO_REF:0000033
    review:
      summary: Git localizes to presynaptic active zones and is involved in synaptic
        vesicle recycling. IBA annotation is phylogenetically sound and supported
        by direct evidence in Drosophila from PMID:24882013.
      action: ACCEPT
      reason: The IBA annotation reflects conserved synaptic localization across the
        GIT family. Direct Drosophila evidence shows dGIT at presynaptic active zones
        (IDA from PMID:24882013) and involvement in synaptic vesicle recycling (IMP
        from PMID:24882013). The synapse annotation appropriately captures this localization.
      supported_by:
        - reference_id: PMID:24882013
          supporting_text: GIT1 and its D. melanogaster ortholog, dGIT, are shown
            to directly associate with the endocytic adaptor stonin 2/stoned B. In
            Drosophila dgit mutants, stoned B and synaptotagmin levels are reduced
            and stoned B is partially mislocalized.
        - reference_id: file:DROME/git/git-deep-research-falcon.md
          supporting_text: 'model: Edison Scientific Literature'
  - term:
      id: GO:0007420
      label: brain development
    evidence_type: IBA
    original_reference_id: GO_REF:0000033
    review:
      summary: Git is required for brain development in Drosophila, with mutants showing
        decreased central brain size and abnormal mushroom body morphology. IBA annotation
        is well-supported by direct experimental evidence in fly.
      action: ACCEPT
      reason: The IBA annotation is strongly supported by direct Drosophila evidence
        (IMP from PMID:25792865). dGit mutants show severely decreased central brain
        size and defects in mushroom body development.
      supported_by:
        - reference_id: PMID:25792865
          supporting_text: dGitex21C Drosophila mutants also exhibited severely decreased
            central brain size
  - term:
      id: GO:0005096
      label: GTPase activator activity
    evidence_type: IBA
    original_reference_id: GO_REF:0000033
    review:
      summary: Git contains a well-characterized ARF-GAP domain and functions as a
        GTPase activating protein for ARF family members. This is a core molecular
        function supported by domain architecture and genetic/interaction data.
      action: ACCEPT
      reason: GTPase activator activity is the primary enzymatic function of Git.
        The protein contains an ArfGAP domain (aa 32-168) with a C4-type zinc finger,
        and genetic evidence places Git upstream of Arf79F in Hippo signaling (PMID:38240353).
        This represents a core function.
      supported_by:
        - reference_id: PMID:18996366
          supporting_text: GIT1-like proteins are GTPase-activating proteins (GAPs)
            for Arfs and interact with a variety of signaling molecules to function
            as integrators of pathways controlling cytoskeletal organization and cell
            motility.
  - term:
      id: GO:0008277
      label: regulation of G protein-coupled receptor signaling pathway
    evidence_type: IBA
    original_reference_id: GO_REF:0000033
    review:
      summary: While Git was originally named for "G protein-coupled receptor kinase
        interacting protein", evidence for direct GPCR signaling regulation in Drosophila
        is limited. The IBA annotation likely derives from mammalian orthologs where
        this connection is better established.
      action: KEEP_AS_NON_CORE
      reason: The GIT family was initially identified through interaction with G-protein
        coupled receptor kinases in mammals, but direct evidence for this role in
        Drosophila Git is lacking. The primary functions of dGit appear to be in adhesion-cytoskeletal
        signaling, synaptic function, and Hippo pathway regulation. Keep as non-core
        pending additional Drosophila-specific evidence.
      supported_by:
        - reference_id: PMID:18996366
          supporting_text: GIT1-like proteins are GTPase-activating proteins (GAPs)
            for Arfs and interact with a variety of signaling molecules to function
            as integrators of pathways controlling cytoskeletal organization and cell
            motility.
  - term:
      id: GO:0031267
      label: small GTPase binding
    evidence_type: IBA
    original_reference_id: GO_REF:0000033
    review:
      summary: Git binds to small GTPases including Arf79F (ARF1 ortholog) to regulate
        their activity. This is consistent with Git's ARF-GAP function.
      action: ACCEPT
      reason: As an ARF-GAP, Git necessarily binds to ARF family small GTPases as
        substrates. Proximity ligation assays in PMID:38240353 demonstrate Git-Arf79F
        interaction in larval tissues. This binding is essential for Git's GAP activity.
      supported_by:
        - reference_id: PMID:38240353
          supporting_text: Git, which also bind to the Hippo protein (Hpo) and are
            involved in the activation of the Hippo pathway. Additionally, we show
            that the ADP ribosylation factor Arf79F (Arf1), which is a Hpo interactor
  - term:
      id: GO:0032012
      label: regulation of ARF protein signal transduction
    evidence_type: IBA
    original_reference_id: GO_REF:0000033
    review:
      summary: Git regulates ARF protein signaling through its GAP activity on Arf79F.
        This is a core function supported by genetic and physical interaction data.
      action: ACCEPT
      reason: Git functions as an ARF-GAP that restrains Arf79F activity. Genetic
        evidence from PMID:38240353 shows that Arf79F knockdown rescues Hippo pathway
        defects in lgl mutants, placing Git in a pathway that negatively regulates
        Arf79F to activate Hippo signaling.
      supported_by:
        - reference_id: PMID:38240353
          supporting_text: 'Lgl acts via Vap33 to activate the Hippo pathway by a
            dual mechanism: (1) through interaction with RtGEF, Git and Arf79F'
  - term:
      id: GO:0036465
      label: synaptic vesicle recycling
    evidence_type: IBA
    original_reference_id: GO_REF:0000033
    review:
      summary: Git is required for proper synaptic vesicle recycling at the neuromuscular
        junction. IBA annotation is directly supported by experimental evidence in
        Drosophila.
      action: ACCEPT
      reason: The IBA annotation is well-supported by IMP evidence from PMID:24882013
        showing that dgit mutants have morphological and functional defects in synaptic
        vesicle recycling.
      supported_by:
        - reference_id: PMID:24882013
          supporting_text: Moreover, dgit mutants show morphological and functional
            defects in SV recycling. These data establish a presynaptic role for GIT
            in SV recycling and suggest a connection between the AZ cytomatrix and
            the endocytic machinery.
  - term:
      id: GO:0000922
      label: spindle pole
    evidence_type: IEA
    original_reference_id: GO_REF:0000044
    review:
      summary: Spindle pole localization is inferred from mammalian ortholog data
        in UniProt. Direct evidence for spindle pole localization of dGit in Drosophila
        is not available.
      action: UNDECIDED
      reason: This IEA annotation is based on mammalian ortholog localization data.
        While GIT family proteins may localize to spindle poles in some contexts,
        direct Drosophila evidence is lacking. The primary characterized localizations
        for dGit are cytoplasm, cell leading edge, focal adhesion-like structures,
        and presynaptic active zones.
  - term:
      id: GO:0005096
      label: GTPase activator activity
    evidence_type: IEA
    original_reference_id: GO_REF:0000120
    review:
      summary: IEA annotation based on InterPro domain (ArfGAP) correctly captures
        Git's enzymatic function. Duplicates the IBA annotation but with different
        evidence.
      action: ACCEPT
      reason: Git contains a well-defined ArfGAP domain (IPR001164) with the characteristic
        zinc finger. The IEA annotation from domain mapping is correct and complements
        the IBA annotation.
      supported_by:
        - reference_id: PMID:12618308
          supporting_text: I surveyed Drosophila and human sequence databases for
            genes predicting proteins related to GAPs for Ras superfamily members
  - term:
      id: GO:0005737
      label: cytoplasm
    evidence_type: IEA
    original_reference_id: GO_REF:0000044
    review:
      summary: Cytoplasmic localization is supported by direct IDA evidence in Drosophila
        (PMID:18996366). The IEA annotation is consistent with experimental data.
      action: ACCEPT
      reason: The IEA annotation is consistent with direct experimental evidence from
        PMID:18996366 showing cytoplasmic localization of dGit protein in embryonic
        muscle syncytia.
      supported_by:
        - reference_id: PMID:18996366
          supporting_text: The dGIT protein is concentrated at the termini of growing
            myotubes and localizes to muscle attachment sites in late stage embryos.
  - term:
      id: GO:0005813
      label: centrosome
    evidence_type: IEA
    original_reference_id: GO_REF:0000044
    review:
      summary: Centrosome localization is inferred from mammalian ortholog data. Direct
        Drosophila evidence for centrosome localization is not available.
      action: UNDECIDED
      reason: This IEA annotation is based on mammalian ortholog data. Direct evidence
        for centrosome localization of dGit in Drosophila has not been reported. The
        characterized Drosophila localizations are cytoplasm, leading edge, focal
        adhesions, and presynaptic zones.
  - term:
      id: GO:0005925
      label: focal adhesion
    evidence_type: IEA
    original_reference_id: GO_REF:0000044
    review:
      summary: Git localizes to focal adhesion-like structures in Drosophila epithelia
        via its paxillin-binding domain. IEA annotation is well-supported by Drosophila
        studies.
      action: ACCEPT
      reason: Although annotated via IEA, focal adhesion localization is strongly
        supported by primary Drosophila literature. Git's C-terminal paxillin-binding
        domain mediates targeting to basal focal adhesion-like structures in follicular
        epithelium.
      supported_by:
        - reference_id: PMID:18996366
          supporting_text: The dGIT protein is concentrated at the termini of growing
            myotubes and localizes to muscle attachment sites in late stage embryos.
  - term:
      id: GO:0007420
      label: brain development
    evidence_type: IEA
    original_reference_id: GO_REF:0000002
    review:
      summary: IEA annotation from InterPro mapping. Brain development role is well-established
        by direct experimental evidence in Drosophila.
      action: ACCEPT
      reason: The IEA annotation correctly captures Git's role in brain development,
        which is directly demonstrated in Drosophila by IMP evidence (PMID:25792865)
        showing reduced brain size and mushroom body defects in dGit mutants.
      supported_by:
        - reference_id: PMID:25792865
          supporting_text: dGitex21C Drosophila mutants also exhibited severely decreased
            central brain size
  - term:
      id: GO:0008270
      label: zinc ion binding
    evidence_type: IEA
    original_reference_id: GO_REF:0000043
    review:
      summary: Git contains a C4-type zinc finger (aa 49-72) within its ArfGAP domain
        that coordinates zinc ions. This is structurally well-supported.
      action: ACCEPT
      reason: The zinc ion binding annotation correctly reflects the presence of a
        C4-type zinc finger within the ArfGAP domain. This zinc finger is essential
        for the structural integrity and function of the GAP domain.
  - term:
      id: GO:0030027
      label: lamellipodium
    evidence_type: IEA
    original_reference_id: GO_REF:0000044
    review:
      summary: Lamellipodium localization is inferred from mammalian ortholog data.
        In Drosophila, Git localizes to leading edges of cells, which includes lamellipodia-like
        structures.
      action: ACCEPT
      reason: While annotated via IEA, the localization is consistent with direct
        Drosophila evidence showing Git at "the leading edge of growing myotubes"
        (PMID:18996366). Cell leading edge structures include lamellipodia.
      supported_by:
        - reference_id: PMID:18996366
          supporting_text: The dGIT protein is concentrated at the termini of growing
            myotubes and localizes to muscle attachment sites in late stage embryos
  - term:
      id: GO:0032012
      label: regulation of ARF protein signal transduction
    evidence_type: IEA
    original_reference_id: GO_REF:0000002
    review:
      summary: IEA annotation from InterPro correctly captures Git's role in ARF signaling
        regulation. Git regulates Arf79F in the Hippo pathway.
      action: ACCEPT
      reason: The IEA annotation is correct and consistent with the IBA annotation
        and experimental data showing Git's function in regulating ARF signaling,
        particularly Arf79F in the context of Hippo pathway activation.
      supported_by:
        - reference_id: PMID:38240353
          supporting_text: 'Lgl acts via Vap33 to activate the Hippo pathway by a
            dual mechanism: (1) through interaction with RtGEF, Git and Arf79F'
  - term:
      id: GO:0045202
      label: synapse
    evidence_type: IEA
    original_reference_id: GO_REF:0000044
    review:
      summary: IEA annotation for synapse localization is consistent with direct experimental
        evidence showing Git at presynaptic active zones in Drosophila.
      action: ACCEPT
      reason: The IEA annotation is well-supported by IDA evidence from PMID:24882013
        showing dGit at the presynaptic active zone. Git functions in synaptic vesicle
        recycling at the synapse.
      supported_by:
        - reference_id: PMID:24882013
          supporting_text: Here, we identify the scaffold G protein coupled receptor
            kinase 2 interacting (GIT) protein as a component of the AZ-associated
            cytomatrix
  - term:
      id: GO:0046872
      label: metal ion binding
    evidence_type: IEA
    original_reference_id: GO_REF:0000043
    review:
      summary: Metal ion binding is a parent term of zinc ion binding. Git binds zinc
        through its C4-type zinc finger.
      action: ACCEPT
      reason: This is a correct parent annotation to zinc ion binding. Git's ArfGAP
        domain contains a zinc-coordinating C4-type zinc finger motif.
  - term:
      id: GO:0005515
      label: protein binding
    evidence_type: IPI
    original_reference_id: PMID:14605208
    review:
      summary: High-throughput two-hybrid screen identified Git interactions with
        RtGEF (dPix). While protein binding is uninformative, the interaction with
        RtGEF is functionally significant for Git's scaffold function.
      action: MODIFY
      reason: The protein binding (GO:0005515) term is uninformative. Git functions
        as a molecular adaptor that specifically binds dPix/RtGEF and PAK. The more
        informative annotation GO:0060090 (molecular adaptor activity) is already
        captured with IMP evidence from PMID:25484297.
      proposed_replacement_terms:
        - id: GO:0060090
          label: molecular adaptor activity
      supported_by:
        - reference_id: PMID:14605208
          supporting_text: A two-hybrid-based protein-interaction map of the fly proteome...The
            network recapitulated known pathways, extended pathways, and uncovered
            previously unknown pathway components.
  - term:
      id: GO:0005515
      label: protein binding
    evidence_type: IPI
    original_reference_id: PMID:38944040
    review:
      summary: Next-generation protein interactome study confirming Git-RtGEF interaction.
        While the specific interaction is meaningful, protein binding is uninformative.
      action: MODIFY
      reason: The protein binding annotation is too general to be informative. Git's
        key function is as a scaffold/adaptor protein that brings together specific
        partners (dPix, PAK, Hpo, Arf79F). The interaction with RtGEF supports Git's
        molecular adaptor function.
      proposed_replacement_terms:
        - id: GO:0060090
          label: molecular adaptor activity
      supported_by:
        - reference_id: PMID:38944040
          supporting_text: Epub 2024 Jun 28. Next-generation Drosophila protein interactome
            map and its functional implications.
  - term:
      id: GO:0035332
      label: positive regulation of hippo signaling
    evidence_type: IGI
    original_reference_id: PMID:38240353
    review:
      summary: Git is part of the Vap33-RtGEF-Git-Arf79F module that activates Hippo
        signaling. Genetic interaction data shows Git knockdown rescues Hippo pathway
        defects in V-ATPase mutants.
      action: ACCEPT
      reason: Well-supported by genetic evidence from PMID:38240353. Vap33 physically
        interacts with RtGEF and Git, which bind to Hpo. Git knockdown rescues reduced
        Diap1 expression in Vha68-2 mutant clones, demonstrating Git's role in Hippo
        pathway activation.
      supported_by:
        - reference_id: PMID:38240353
          supporting_text: Git knockdown rescues the reduced Hippo pathway target
            gene expression in Vha68-2 mutant clones
  - term:
      id: GO:0007420
      label: brain development
    evidence_type: IMP
    original_reference_id: PMID:25792865
    review:
      summary: dGit mutants show decreased central brain size and abnormal mushroom
        body development, directly demonstrating Git's role in brain development.
      action: ACCEPT
      reason: Direct experimental evidence from mutant analysis. dGitex21C mutants
        show severely decreased central brain size and defects in mushroom body alpha
        and beta lobe development.
      supported_by:
        - reference_id: PMID:25792865
          supporting_text: Consistent with Git1-/- mice, dGitex21C Drosophila mutants
            also exhibited severely decreased central brain size
  - term:
      id: GO:0046621
      label: negative regulation of organ growth
    evidence_type: IGI
    original_reference_id: PMID:25484297
    review:
      summary: Git and Pix control tissue growth via the Hippo pathway. Git promotes
        Hpo activation, which restricts tissue growth. This is a core function linking
        Git to growth control.
      action: ACCEPT
      reason: Strong genetic evidence from PMID:25484297. Git and Pix form an oligomeric
        scaffold that promotes Hpo dimerization and autophosphorylation, thereby activating
        Hippo signaling and restricting organ growth.
      supported_by:
        - reference_id: PMID:25484297
          supporting_text: We show that Pix and Git regulate Hippo-pathway-dependent
            tissue growth in D. melanogaster and that they do this in parallel to
            the known upstream regulator Fat cadherin.
  - term:
      id: GO:0035332
      label: positive regulation of hippo signaling
    evidence_type: IGI
    original_reference_id: PMID:25484297
    review:
      summary: Git and Pix promote Hpo kinase activation by facilitating Hpo dimerization
        and autophosphorylation. This is a core signaling function.
      action: ACCEPT
      reason: Well-characterized mechanism from PMID:25484297. Pix and Git act as
        scaffold proteins to promote Hpo dimerization and autophosphorylation of its
        activation loop, thereby activating the Hippo pathway.
      supported_by:
        - reference_id: PMID:25484297
          supporting_text: Pix and Git influence activity of the Hpo kinase by acting
            as a scaffold complex, rather than enzymes, and promote Hpo dimerization
            and autophosphorylation of Hpo's activation loop.
  - term:
      id: GO:0060090
      label: molecular adaptor activity
    evidence_type: IMP
    original_reference_id: PMID:25484297
    review:
      summary: Git functions as a molecular adaptor/scaffold that brings together
        dPix, PAK, and Hpo to facilitate signaling. This is a core molecular function.
      action: ACCEPT
      reason: Well-supported core function. Git acts as a scaffold rather than an
        enzyme in promoting Hippo pathway activation. Git's adaptor function is also
        demonstrated in its role bringing together dPix and PAK at adhesion sites.
      supported_by:
        - reference_id: PMID:25484297
          supporting_text: Pix and Git influence activity of the Hpo kinase by acting
            as a scaffold complex, rather than enzymes
  - term:
      id: GO:1905383
      label: protein localization to presynapse
    evidence_type: IMP
    original_reference_id: PMID:24882013
    review:
      summary: Git is required for proper localization of synaptic proteins (stoned
        B, synaptotagmin) to the presynapse. dgit mutants show reduced and mislocalized
        stoned B.
      action: ACCEPT
      reason: Direct evidence from PMID:24882013. In dgit mutants, stoned B levels
        are reduced and the protein is partially mislocalized from the presynaptic
        compartment.
      supported_by:
        - reference_id: PMID:24882013
          supporting_text: In Drosophila dgit mutants, stoned B and synaptotagmin
            levels are reduced and stoned B is partially mislocalized.
  - term:
      id: GO:0005515
      label: protein binding
    evidence_type: IPI
    original_reference_id: PMID:24882013
    review:
      summary: Git interacts with stonin 2/stoned B at the presynapse. While the specific
        interaction is meaningful for synaptic function, protein binding is uninformative.
      action: MODIFY
      reason: The protein binding term is too general. The functionally relevant annotation
        is the specific interaction with stoned B that facilitates synaptic vesicle
        endocytosis. This interaction supports Git's role as a presynaptic scaffold.
      proposed_replacement_terms:
        - id: GO:0060090
          label: molecular adaptor activity
      supported_by:
        - reference_id: PMID:24882013
          supporting_text: GIT1 and its D. melanogaster ortholog, dGIT, are shown
            to directly associate with the endocytic adaptor stonin 2/stoned B.
  - term:
      id: GO:0048786
      label: presynaptic active zone
    evidence_type: IDA
    original_reference_id: PMID:24882013
    review:
      summary: Direct localization evidence showing Git at the presynaptic active
        zone cytomatrix. This is a well-supported subcellular localization.
      action: ACCEPT
      reason: Direct assay evidence from PMID:24882013 demonstrating Git localization
        to the active zone-associated cytomatrix.
      supported_by:
        - reference_id: PMID:24882013
          supporting_text: Here, we identify the scaffold G protein coupled receptor
            kinase 2 interacting (GIT) protein as a component of the AZ-associated
            cytomatrix
  - term:
      id: GO:0048788
      label: cytoskeleton of presynaptic active zone
    evidence_type: IDA
    original_reference_id: PMID:24882013
    review:
      summary: Git colocalizes with the cytoskeletal components of the presynaptic
        active zone. The annotation uses "colocalizes_with" qualifier, appropriately
        reflecting the colocalization rather than integral association.
      action: ACCEPT
      reason: Direct evidence from PMID:24882013 showing Git association with the
        presynaptic cytomatrix. Git's scaffold function at the active zone involves
        the cytoskeletal framework.
      supported_by:
        - reference_id: PMID:24882013
          supporting_text: Here, we identify the scaffold G protein coupled receptor
            kinase 2 interacting (GIT) protein as a component of the AZ-associated
            cytomatrix
  - term:
      id: GO:0099504
      label: synaptic vesicle cycle
    evidence_type: IMP
    original_reference_id: PMID:24882013
    review:
      summary: Git is required for normal synaptic vesicle cycling. dgit mutants show
        defects in both exo- and endocytic aspects of the vesicle cycle.
      action: ACCEPT
      reason: Direct evidence from mutant analysis in PMID:24882013 showing morphological
        and functional defects in synaptic vesicle cycling in dgit mutants.
      supported_by:
        - reference_id: PMID:24882013
          supporting_text: dgit mutants show morphological and functional defects
            in SV recycling. These data establish a presynaptic role for GIT in SV
            recycling
  - term:
      id: GO:0036465
      label: synaptic vesicle recycling
    evidence_type: IMP
    original_reference_id: PMID:24882013
    review:
      summary: Git is specifically required for synaptic vesicle recycling, the endocytic
        retrieval phase of the vesicle cycle. This is a core synaptic function.
      action: ACCEPT
      reason: Direct evidence from PMID:24882013. Git associates with the endocytic
        adaptor stoned B and is required for proper SV recycling. This is a core presynaptic
        function.
      supported_by:
        - reference_id: PMID:24882013
          supporting_text: dgit mutants show morphological and functional defects
            in SV recycling. These data establish a presynaptic role for GIT in SV
            recycling and suggest a connection between the AZ cytomatrix and the endocytic
            machinery.
  - term:
      id: GO:0016319
      label: mushroom body development
    evidence_type: IMP
    original_reference_id: PMID:25792865
    review:
      summary: dGit mutants show defects in mushroom body development, with abnormal
        alpha and beta lobe morphology. This is a well-supported developmental function.
      action: ACCEPT
      reason: Direct mutant analysis in PMID:25792865 shows dGitex21C mutants have
        abnormal mushroom body development, with the most common defect being early
        termination of one alpha-lobe (58%).
      supported_by:
        - reference_id: PMID:25792865
          supporting_text: was significantly affected by the deletion of dGit. (Fig.
            4C). However, the penetrance of this impaired mushroom body development
            was incomplete
  - term:
      id: GO:0005096
      label: GTPase activator activity
    evidence_type: ISM
    original_reference_id: PMID:12618308
    review:
      summary: ISM annotation based on computational survey of GAP domains. Git is
        correctly identified as an ARF-GAP based on sequence analysis.
      action: ACCEPT
      reason: The computational survey in PMID:12618308 correctly identified Git (CG16728)
        as encoding an ARF-GAP based on domain analysis. This is consistent with the
        experimentally validated function.
      supported_by:
        - reference_id: PMID:12618308
          supporting_text: To facilitate genetic analysis, I surveyed Drosophila and
            human sequence databases for genes predicting proteins related to GAPs
            for Ras superfamily members
  - term:
      id: GO:0005737
      label: cytoplasm
    evidence_type: IDA
    original_reference_id: PMID:18996366
    review:
      summary: Direct localization evidence showing Git in the cytoplasm of embryonic
        muscle cells. This is a core localization.
      action: ACCEPT
      reason: Direct assay evidence from PMID:18996366 showing dGit protein in the
        cytoplasm of embryonic muscle syncytia.
      supported_by:
        - reference_id: PMID:18996366
          supporting_text: The dGIT protein is concentrated at the termini of growing
            myotubes and localizes to muscle attachment sites in late stage embryos
  - term:
      id: GO:0007525
      label: somatic muscle development
    evidence_type: IMP
    original_reference_id: PMID:18996366
    review:
      summary: dGit is required for proper muscle morphogenesis and myotube guidance
        during embryogenesis. dgit mutants show muscle patterning defects.
      action: ACCEPT
      reason: Core developmental function supported by mutant analysis in PMID:18996366.
        dgit mutant embryos show muscle patterning defects including aberrant targeting
        in subsets of muscles, particularly ventral oblique muscles VO5 and VO6.
      supported_by:
        - reference_id: PMID:18996366
          supporting_text: dgit mutant embryos show muscle patterning defects and
            aberrant targeting in subsets of their muscles
  - term:
      id: GO:0031252
      label: cell leading edge
    evidence_type: IDA
    original_reference_id: PMID:18996366
    review:
      summary: Git localizes to the leading edge of growing myotubes during muscle
        development. This is a core localization related to Git's role in cell motility
        and morphogenesis.
      action: ACCEPT
      reason: Direct localization evidence from PMID:18996366 showing Git enrichment
        at the leading edge of growing myotubes, particularly at the base of membrane
        protrusions.
      supported_by:
        - reference_id: PMID:18996366
          supporting_text: The dGIT protein is concentrated at the termini of growing
            myotubes
  - term:
      id: GO:0035591
      label: signaling adaptor activity
    evidence_type: NAS
    review:
      summary: Added to align core_functions with existing annotations.
      action: NEW
      reason: Core function term not present in existing_annotations.
  - term:
      id: GO:0110020
      label: regulation of actomyosin structure organization
    evidence_type: NAS
    review:
      summary: Added to align core_functions with existing annotations.
      action: NEW
      reason: Core function term not present in existing_annotations.
  - term:
      id: TEMP:dPix-Git-PAK_complex
      label: dPix-Git-PAK complex
    evidence_type: NAS
    review:
      summary: Added to align core_functions with existing annotations.
      action: NEW
      reason: Core function complex term not present in existing_annotations.
references:
  - id: GO_REF:0000002
    title: Gene Ontology annotation through association of InterPro records with GO
      terms
    findings: []
  - id: GO_REF:0000033
    title: Annotation inferences using phylogenetic trees
    findings: []
  - id: GO_REF:0000043
    title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
    findings: []
  - id: GO_REF:0000044
    title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location
      vocabulary mapping, accompanied by conservative changes to GO terms applied
      by UniProt
    findings: []
  - id: GO_REF:0000120
    title: Combined Automated Annotation using Multiple IEA Methods
    findings: []
  - id: PMID:12618308
    title: GAPs galore! A survey of putative Ras superfamily GTPase activating proteins
      in man and Drosophila.
    findings:
      - statement: Git (CG16728) is computationally identified as encoding an ARF-GAP
          based on conserved domain analysis in a systematic survey of Drosophila
          and human GAP genes.
        supporting_text: To facilitate genetic analysis, I surveyed Drosophila and
          human sequence databases for genes predicting proteins related to GAPs for
          Ras superfamily members. Remarkably, close to 0.5% of genes in both species
          (173 human and 64 Drosophila genes) predict proteins related to GAPs for
          Arf, Rab, Ran, Rap, Ras, Rho, and Sar family GTPases.
        reference_section_type: ABSTRACT
        full_text_unavailable: true
  - id: PMID:14605208
    title: A protein interaction map of Drosophila melanogaster.
    findings:
      - statement: Git interacts with RtGEF (dPix) in a high-throughput two-hybrid
          screen of the Drosophila proteome, supporting the conserved Pix-Git protein
          complex.
        supporting_text: A two-hybrid-based protein-interaction map of the fly proteome.
          A total of 10,623 predicted transcripts were isolated and screened against
          standard and normalized complementary DNA libraries to produce a draft map
          of 7048 proteins and 20,405 interactions... The network recapitulated known
          pathways, extended pathways, and uncovered previously unknown pathway components.
        reference_section_type: ABSTRACT
        full_text_unavailable: true
  - id: PMID:18996366
    title: The Drosophila homologue of Arf-GAP GIT1, dGIT, is required for proper
      muscle morphogenesis and guidance during embryogenesis.
    findings:
      - statement: dGIT is a GTPase-activating protein for ARF family members that
          integrates signaling pathways controlling cytoskeletal organization and
          cell motility.
        supporting_text: GIT1-like proteins are GTPase-activating proteins (GAPs)
          for Arfs and interact with a variety of signaling molecules to function
          as integrators of pathways controlling cytoskeletal organization and cell
          motility.
        reference_section_type: ABSTRACT
        full_text_unavailable: true
      - statement: dGIT is required for proper muscle morphogenesis and myotube guidance
          during embryogenesis.
        supporting_text: we describe the characterization of a Drosophila homologue
          of GIT1, dGIT, and show that it is required for proper muscle morphogenesis
          and myotube guidance in the fly embryo.
        reference_section_type: ABSTRACT
        full_text_unavailable: true
      - statement: dGIT protein localizes to the leading edge of growing myotubes
          and to muscle attachment sites.
        supporting_text: The dGIT protein is concentrated at the termini of growing
          myotubes and localizes to muscle attachment sites in late stage embryos.
        reference_section_type: ABSTRACT
        full_text_unavailable: true
      - statement: dgit mutant embryos show muscle patterning defects and aberrant
          targeting in subsets of muscles.
        supporting_text: dgit mutant embryos show muscle patterning defects and aberrant
          targeting in subsets of their muscles.
        reference_section_type: ABSTRACT
        full_text_unavailable: true
      - statement: dGIT is required for proper localization of dPak to myotube termini
          and forms a complex with dPak in the presence of dPIX.
        supporting_text: dgit mutant muscles fail to localize the p21-activated kinase,
          dPak, to their termini. dPak and dGIT form a complex in the presence of
          dPIX and dpak mutant embryos show similar muscle morphogenesis and targeting
          phenotypes to that of dgit.
        reference_section_type: ABSTRACT
        full_text_unavailable: true
  - id: PMID:24882013
    title: A presynaptic role for the cytomatrix protein GIT in synaptic vesicle recycling.
    findings:
      - statement: GIT is a component of the active zone (AZ)-associated cytomatrix
          at presynaptic terminals.
        supporting_text: Here, we identify the scaffold G protein coupled receptor
          kinase 2 interacting (GIT) protein as a component of the AZ-associated cytomatrix
          and as a regulator of SV endocytosis.
        reference_section_type: ABSTRACT
        full_text_unavailable: true
      - statement: GIT directly associates with the endocytic adaptor stonin 2/stoned
          B, linking the active zone cytomatrix to endocytic machinery.
        supporting_text: GIT1 and its D. melanogaster ortholog, dGIT, are shown to
          directly associate with the endocytic adaptor stonin 2/stoned B.
        reference_section_type: ABSTRACT
        full_text_unavailable: true
      - statement: In dgit mutants, stoned B and synaptotagmin levels are reduced
          and stoned B is partially mislocalized from the presynapse.
        supporting_text: In Drosophila dgit mutants, stoned B and synaptotagmin levels
          are reduced and stoned B is partially mislocalized.
        reference_section_type: ABSTRACT
        full_text_unavailable: true
      - statement: dgit mutants show morphological and functional defects in synaptic
          vesicle recycling.
        supporting_text: Moreover, dgit mutants show morphological and functional
          defects in SV recycling. These data establish a presynaptic role for GIT
          in SV recycling and suggest a connection between the AZ cytomatrix and the
          endocytic machinery.
        reference_section_type: ABSTRACT
        full_text_unavailable: true
  - id: PMID:25484297
    title: The GTPase regulatory proteins Pix and Git control tissue growth via the
      Hippo pathway.
    findings:
      - statement: Pix and Git were identified as prominent Hippo (Hpo) kinase interactors
          through proteomics.
        supporting_text: we used proteomics to identify proteins that bind to the
          Hippo (Hpo) kinase. Prominent among these were PAK-interacting exchange
          factor (known as Pix or RtGEF) and G-protein-coupled receptor kinase-interacting
          protein (Git).
        reference_section_type: ABSTRACT
        full_text_unavailable: true
      - statement: Git is the single Drosophila melanogaster homolog of mammalian
          GIT1 and GIT2 proteins.
        supporting_text: Git is the single Drosophila melanogaster homolog of the
          mammalian GIT1 and GIT2 proteins, which were originally identified in the
          search for molecules that interact with G-protein-coupled receptor kinases.
        reference_section_type: ABSTRACT
        full_text_unavailable: true
      - statement: Pix and Git form an oligomeric scaffold to facilitate sterile 20-like
          kinase activation.
        supporting_text: Pix and Git form an oligomeric scaffold to facilitate sterile
          20-like kinase activation and have also been linked to GTPase regulation.
        reference_section_type: ABSTRACT
        full_text_unavailable: true
      - statement: Pix and Git regulate Hippo-pathway-dependent tissue growth in parallel
          to the known upstream regulator Fat cadherin.
        supporting_text: We show that Pix and Git regulate Hippo-pathway-dependent
          tissue growth in D. melanogaster and that they do this in parallel to the
          known upstream regulator Fat cadherin.
        reference_section_type: ABSTRACT
        full_text_unavailable: true
      - statement: Pix and Git act as a scaffold complex (not enzymes) to promote
          Hpo dimerization and autophosphorylation of Hpo's activation loop.
        supporting_text: Pix and Git influence activity of the Hpo kinase by acting
          as a scaffold complex, rather than enzymes, and promote Hpo dimerization
          and autophosphorylation of Hpo's activation loop.
        reference_section_type: ABSTRACT
        full_text_unavailable: true
  - id: PMID:25792865
    title: A Critical Role of GIT1 in Vertebrate and Invertebrate Brain Development.
    findings:
      - statement: dGit shows remarkable conservation with mammalian Git1 both structurally
          and functionally, forming a signaling complex with dPix and dPak.
        supporting_text: dGit, a Drosophila ortholog of Git1, shows remarkable conservation
          with mammalian Git1 both structurally and functionally. dGit forms signaling
          complex with dPix and dPak, and the dGit-dPix-dPak signaling pathway plays
          an essential role for the development in Drosophila.
        reference_section_type: INTRODUCTION
        full_text_unavailable: false
      - statement: Adult dGit mutants exhibit severely decreased central brain size,
          consistent with mammalian Git1 knockout phenotypes.
        supporting_text: Consistent with Git1-/- mice, dGitex21C Drosophila mutants
          also exhibited severely decreased central brain size
        reference_section_type: RESULTS
        full_text_unavailable: false
      - statement: dGit deletion significantly affects mushroom body development,
          with the most common defect being early termination of one alpha-lobe (58%).
        supporting_text: Moreover, the development of alpha- or/and beta-lobe of the
          mushroom body, which is known to be important for learning and memory in
          Drosophila [30], was significantly affected by the deletion of dGit
        reference_section_type: RESULTS
        full_text_unavailable: false
      - statement: dGit regulates the subcellular localization and activation of the
          dPix-Rac-dPak signaling complex, and its dysregulation causes brain size
          reduction and abnormal mushroom body development.
        supporting_text: subcellular localization and activation of the dPix-Rac-dPak
          signaling complex is modulated by dGit, and dysregultion of this signaling
          complex causes severe defects, leading to brain size reduction and abnormal
          mushroom body development.
        reference_section_type: DISCUSSION
        full_text_unavailable: false
      - statement: GIT1 plays a conserved and critical role in brain development across
          invertebrates and vertebrates.
        supporting_text: severe developmental deficits shown in Git1-/- mice as well
          as adult dGit1ex21C Drosophila mutants indicate the conserved and critical
          role of GIT1 in brain development.
        reference_section_type: DISCUSSION
        full_text_unavailable: false
  - id: PMID:38240353
    title: The Drosophila tumour suppressor Lgl and Vap33 activate the Hippo pathway
      through a dual mechanism.
    findings:
      - statement: Vap33 physically and genetically interacts with Git, which binds
          to Hpo and is involved in Hippo pathway activation.
        supporting_text: Vap33 physically and genetically interacts with the actin
          cytoskeletal regulators RtGEF (Pix) and Git, which also bind to the Hippo
          protein (Hpo) and are involved in the activation of the Hippo pathway.
        reference_section_type: ABSTRACT
        full_text_unavailable: false
      - statement: Lgl activates the Hippo pathway via Vap33 through a mechanism involving
          RtGEF, Git, and Arf79F.
        supporting_text: 'Altogether, our data suggest that Lgl acts via Vap33 to
          activate the Hippo pathway by a dual mechanism: (1) through interaction
          with RtGEF, Git and Arf79F, and (2) through interaction and inhibition of
          the V-ATPase, thereby controlling epithelial tissue growth.'
        reference_section_type: ABSTRACT
        full_text_unavailable: false
      - statement: Git knockdown rescues reduced Hippo pathway target gene expression
          in Vha68-2 mutant clones, demonstrating Git's role in Hippo pathway regulation.
        supporting_text: Git knockdown rescues the reduced Hippo pathway target gene
          expression in Vha68-2 mutant clones
        reference_section_type: RESULTS
        full_text_unavailable: false
      - statement: Vap33, Lgl, RtGEF, Git, Arf79F, and Hpo form a protein interaction
          network that regulates the Hippo pathway.
        supporting_text: Vap33 and Lgl form a protein interaction network with RtGEF,
          Git, Arf79F and Hpo
        reference_section_type: RESULTS
        full_text_unavailable: false
  - id: PMID:38944040
    title: Next-generation Drosophila protein interactome map and its functional implications.
    findings:
      - statement: Git interactions were identified in the next-generation Drosophila
          protein interactome map (DPIM2) using affinity purification-mass spectrometry,
          confirming its role in protein complexes.
        supporting_text: We describe a next-generation Drosophila protein interaction
          map-"DPIM2"-established from affinity purification-mass spectrometry of
          5,805 baits, covering the largest fraction of the Drosophila proteome
        reference_section_type: ABSTRACT
        full_text_unavailable: true
  - id: file:DROME/git/git-deep-research-falcon.md
    title: Deep research report on Git
    findings: []
core_functions:
  - description: Git stimulates GTP hydrolysis on Arf79F (ARF1 ortholog), inactivating
      ARF signaling to promote Hippo pathway activation and regulate membrane trafficking.
    molecular_function:
      id: GO:0005096
      label: GTPase activator activity
    directly_involved_in:
      - id: GO:0032012
        label: regulation of ARF protein signal transduction
      - id: GO:0035332
        label: positive regulation of hippo signaling
    locations:
      - id: GO:0005737
        label: cytoplasm
      - id: GO:0005925
        label: focal adhesion
    substrates:
      - id: UniProtKB:P32387
        label: Arf79F (Drosophila ARF1)
  - description: Git acts as a signaling adaptor at focal adhesion-like structures,
      scaffolding the dPix-Git-PAK complex via its paxillin-binding domain to limit
      myosin II activation and maintain epithelial organization during morphogenesis.
    supported_by:
      - reference_id: PMID:25484297
        supporting_text: Pix and Git influence activity of the Hpo kinase by acting
          as a scaffold complex, rather than enzymes
      - reference_id: file:DROME/git/git-deep-research-falcon.md
        supporting_text: dPix-Git localizes to basal, focal-adhesion-like structures
          and leading edges; Git's paxillin-binding domain mediates targeting; the
          complex limits myosin II activity and ensures monolayer integrity
    molecular_function:
      id: GO:0035591
      label: signaling adaptor activity
    directly_involved_in:
      - id: GO:0110020
        label: regulation of actomyosin structure organization
      - id: GO:0007525
        label: somatic muscle development
    locations:
      - id: GO:0005925
        label: focal adhesion
      - id: GO:0031252
        label: cell leading edge
  - description: Git scaffolds Hpo dimerization and autophosphorylation as part of
      the Lgl-Vap33-RtGEF-Git-Arf79F module, activating Hippo signaling to restrict
      organ growth.
    molecular_function:
      id: GO:0060090
      label: molecular adaptor activity
    directly_involved_in:
      - id: GO:0035332
        label: positive regulation of hippo signaling
      - id: GO:0046621
        label: negative regulation of organ growth
    locations:
      - id: GO:0005737
        label: cytoplasm
  - description: Git localizes to the presynaptic active zone cytomatrix and associates
      with stoned B to facilitate synaptic vesicle recycling at the neuromuscular
      junction.
    molecular_function:
      id: GO:0060090
      label: molecular adaptor activity
    directly_involved_in:
      - id: GO:0036465
        label: synaptic vesicle recycling
      - id: GO:1905383
        label: protein localization to presynapse
    locations:
      - id: GO:0048786
        label: presynaptic active zone
      - id: GO:0048788
        label: cytoskeleton of presynaptic active zone