ARF GTPase-activating protein that functions as a multidomain scaffold protein, forming a conserved dPix-Git-PAK complex at focal adhesion-like sites. Git stimulates GTP hydrolysis on ARF family GTPases (particularly Arf79F, the fly ARF1 ortholog), acts as a molecular adaptor targeting the complex basally via its paxillin-binding domain, and regulates actomyosin dynamics, synaptic vesicle recycling, and Hippo pathway signaling.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0045202
synapse
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Git localizes to presynaptic active zones and is involved in synaptic vesicle recycling. IBA annotation is phylogenetically sound and supported by direct evidence in Drosophila from PMID:24882013.
Reason: The IBA annotation reflects conserved synaptic localization across the GIT family. Direct Drosophila evidence shows dGIT at presynaptic active zones (IDA from PMID:24882013) and involvement in synaptic vesicle recycling (IMP from PMID:24882013). The synapse annotation appropriately captures this localization.
Supporting Evidence:
PMID:24882013
GIT1 and its D. melanogaster ortholog, dGIT, are shown to directly associate with the endocytic adaptor stonin 2/stoned B. In Drosophila dgit mutants, stoned B and synaptotagmin levels are reduced and stoned B is partially mislocalized.
file:DROME/git/git-deep-research-falcon.md
model: Edison Scientific Literature
|
|
GO:0007420
brain development
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Git is required for brain development in Drosophila, with mutants showing decreased central brain size and abnormal mushroom body morphology. IBA annotation is well-supported by direct experimental evidence in fly.
Reason: The IBA annotation is strongly supported by direct Drosophila evidence (IMP from PMID:25792865). dGit mutants show severely decreased central brain size and defects in mushroom body development.
Supporting Evidence:
PMID:25792865
dGitex21C Drosophila mutants also exhibited severely decreased central brain size
|
|
GO:0005096
GTPase activator activity
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Git contains a well-characterized ARF-GAP domain and functions as a GTPase activating protein for ARF family members. This is a core molecular function supported by domain architecture and genetic/interaction data.
Reason: GTPase activator activity is the primary enzymatic function of Git. The protein contains an ArfGAP domain (aa 32-168) with a C4-type zinc finger, and genetic evidence places Git upstream of Arf79F in Hippo signaling (PMID:38240353). This represents a core function.
Supporting Evidence:
PMID:18996366
GIT1-like proteins are GTPase-activating proteins (GAPs) for Arfs and interact with a variety of signaling molecules to function as integrators of pathways controlling cytoskeletal organization and cell motility.
|
|
GO:0008277
regulation of G protein-coupled receptor signaling pathway
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: While Git was originally named for "G protein-coupled receptor kinase interacting protein", evidence for direct GPCR signaling regulation in Drosophila is limited. The IBA annotation likely derives from mammalian orthologs where this connection is better established.
Reason: The GIT family was initially identified through interaction with G-protein coupled receptor kinases in mammals, but direct evidence for this role in Drosophila Git is lacking. The primary functions of dGit appear to be in adhesion-cytoskeletal signaling, synaptic function, and Hippo pathway regulation. Keep as non-core pending additional Drosophila-specific evidence.
Supporting Evidence:
PMID:18996366
GIT1-like proteins are GTPase-activating proteins (GAPs) for Arfs and interact with a variety of signaling molecules to function as integrators of pathways controlling cytoskeletal organization and cell motility.
|
|
GO:0031267
small GTPase binding
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Git binds to small GTPases including Arf79F (ARF1 ortholog) to regulate their activity. This is consistent with Git's ARF-GAP function.
Reason: As an ARF-GAP, Git necessarily binds to ARF family small GTPases as substrates. Proximity ligation assays in PMID:38240353 demonstrate Git-Arf79F interaction in larval tissues. This binding is essential for Git's GAP activity.
Supporting Evidence:
PMID:38240353
Git, which also bind to the Hippo protein (Hpo) and are involved in the activation of the Hippo pathway. Additionally, we show that the ADP ribosylation factor Arf79F (Arf1), which is a Hpo interactor
|
|
GO:0032012
regulation of ARF protein signal transduction
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Git regulates ARF protein signaling through its GAP activity on Arf79F. This is a core function supported by genetic and physical interaction data.
Reason: Git functions as an ARF-GAP that restrains Arf79F activity. Genetic evidence from PMID:38240353 shows that Arf79F knockdown rescues Hippo pathway defects in lgl mutants, placing Git in a pathway that negatively regulates Arf79F to activate Hippo signaling.
Supporting Evidence:
PMID:38240353
Lgl acts via Vap33 to activate the Hippo pathway by a dual mechanism: (1) through interaction with RtGEF, Git and Arf79F
|
|
GO:0036465
synaptic vesicle recycling
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Git is required for proper synaptic vesicle recycling at the neuromuscular junction. IBA annotation is directly supported by experimental evidence in Drosophila.
Reason: The IBA annotation is well-supported by IMP evidence from PMID:24882013 showing that dgit mutants have morphological and functional defects in synaptic vesicle recycling.
Supporting Evidence:
PMID:24882013
Moreover, dgit mutants show morphological and functional defects in SV recycling. These data establish a presynaptic role for GIT in SV recycling and suggest a connection between the AZ cytomatrix and the endocytic machinery.
|
|
GO:0000922
spindle pole
|
IEA
GO_REF:0000044 |
UNDECIDED |
Summary: Spindle pole localization is inferred from mammalian ortholog data in UniProt. Direct evidence for spindle pole localization of dGit in Drosophila is not available.
Reason: This IEA annotation is based on mammalian ortholog localization data. While GIT family proteins may localize to spindle poles in some contexts, direct Drosophila evidence is lacking. The primary characterized localizations for dGit are cytoplasm, cell leading edge, focal adhesion-like structures, and presynaptic active zones.
|
|
GO:0005096
GTPase activator activity
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: IEA annotation based on InterPro domain (ArfGAP) correctly captures Git's enzymatic function. Duplicates the IBA annotation but with different evidence.
Reason: Git contains a well-defined ArfGAP domain (IPR001164) with the characteristic zinc finger. The IEA annotation from domain mapping is correct and complements the IBA annotation.
Supporting Evidence:
PMID:12618308
I surveyed Drosophila and human sequence databases for genes predicting proteins related to GAPs for Ras superfamily members
|
|
GO:0005737
cytoplasm
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: Cytoplasmic localization is supported by direct IDA evidence in Drosophila (PMID:18996366). The IEA annotation is consistent with experimental data.
Reason: The IEA annotation is consistent with direct experimental evidence from PMID:18996366 showing cytoplasmic localization of dGit protein in embryonic muscle syncytia.
Supporting Evidence:
PMID:18996366
The dGIT protein is concentrated at the termini of growing myotubes and localizes to muscle attachment sites in late stage embryos.
|
|
GO:0005813
centrosome
|
IEA
GO_REF:0000044 |
UNDECIDED |
Summary: Centrosome localization is inferred from mammalian ortholog data. Direct Drosophila evidence for centrosome localization is not available.
Reason: This IEA annotation is based on mammalian ortholog data. Direct evidence for centrosome localization of dGit in Drosophila has not been reported. The characterized Drosophila localizations are cytoplasm, leading edge, focal adhesions, and presynaptic zones.
|
|
GO:0005925
focal adhesion
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: Git localizes to focal adhesion-like structures in Drosophila epithelia via its paxillin-binding domain. IEA annotation is well-supported by Drosophila studies.
Reason: Although annotated via IEA, focal adhesion localization is strongly supported by primary Drosophila literature. Git's C-terminal paxillin-binding domain mediates targeting to basal focal adhesion-like structures in follicular epithelium.
Supporting Evidence:
PMID:18996366
The dGIT protein is concentrated at the termini of growing myotubes and localizes to muscle attachment sites in late stage embryos.
|
|
GO:0007420
brain development
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: IEA annotation from InterPro mapping. Brain development role is well-established by direct experimental evidence in Drosophila.
Reason: The IEA annotation correctly captures Git's role in brain development, which is directly demonstrated in Drosophila by IMP evidence (PMID:25792865) showing reduced brain size and mushroom body defects in dGit mutants.
Supporting Evidence:
PMID:25792865
dGitex21C Drosophila mutants also exhibited severely decreased central brain size
|
|
GO:0008270
zinc ion binding
|
IEA
GO_REF:0000043 |
ACCEPT |
Summary: Git contains a C4-type zinc finger (aa 49-72) within its ArfGAP domain that coordinates zinc ions. This is structurally well-supported.
Reason: The zinc ion binding annotation correctly reflects the presence of a C4-type zinc finger within the ArfGAP domain. This zinc finger is essential for the structural integrity and function of the GAP domain.
|
|
GO:0030027
lamellipodium
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: Lamellipodium localization is inferred from mammalian ortholog data. In Drosophila, Git localizes to leading edges of cells, which includes lamellipodia-like structures.
Reason: While annotated via IEA, the localization is consistent with direct Drosophila evidence showing Git at "the leading edge of growing myotubes" (PMID:18996366). Cell leading edge structures include lamellipodia.
Supporting Evidence:
PMID:18996366
The dGIT protein is concentrated at the termini of growing myotubes and localizes to muscle attachment sites in late stage embryos
|
|
GO:0032012
regulation of ARF protein signal transduction
|
IEA
GO_REF:0000002 |
ACCEPT |
Summary: IEA annotation from InterPro correctly captures Git's role in ARF signaling regulation. Git regulates Arf79F in the Hippo pathway.
Reason: The IEA annotation is correct and consistent with the IBA annotation and experimental data showing Git's function in regulating ARF signaling, particularly Arf79F in the context of Hippo pathway activation.
Supporting Evidence:
PMID:38240353
Lgl acts via Vap33 to activate the Hippo pathway by a dual mechanism: (1) through interaction with RtGEF, Git and Arf79F
|
|
GO:0045202
synapse
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: IEA annotation for synapse localization is consistent with direct experimental evidence showing Git at presynaptic active zones in Drosophila.
Reason: The IEA annotation is well-supported by IDA evidence from PMID:24882013 showing dGit at the presynaptic active zone. Git functions in synaptic vesicle recycling at the synapse.
Supporting Evidence:
PMID:24882013
Here, we identify the scaffold G protein coupled receptor kinase 2 interacting (GIT) protein as a component of the AZ-associated cytomatrix
|
|
GO:0046872
metal ion binding
|
IEA
GO_REF:0000043 |
ACCEPT |
Summary: Metal ion binding is a parent term of zinc ion binding. Git binds zinc through its C4-type zinc finger.
Reason: This is a correct parent annotation to zinc ion binding. Git's ArfGAP domain contains a zinc-coordinating C4-type zinc finger motif.
|
|
GO:0005515
protein binding
|
IPI
PMID:14605208 A protein interaction map of Drosophila melanogaster. |
MODIFY |
Summary: High-throughput two-hybrid screen identified Git interactions with RtGEF (dPix). While protein binding is uninformative, the interaction with RtGEF is functionally significant for Git's scaffold function.
Reason: The protein binding (GO:0005515) term is uninformative. Git functions as a molecular adaptor that specifically binds dPix/RtGEF and PAK. The more informative annotation GO:0060090 (molecular adaptor activity) is already captured with IMP evidence from PMID:25484297.
Proposed replacements:
molecular adaptor activity
Supporting Evidence:
PMID:14605208
A two-hybrid-based protein-interaction map of the fly proteome...The network recapitulated known pathways, extended pathways, and uncovered previously unknown pathway components.
|
|
GO:0005515
protein binding
|
IPI
PMID:38944040 Next-generation Drosophila protein interactome map and its f... |
MODIFY |
Summary: Next-generation protein interactome study confirming Git-RtGEF interaction. While the specific interaction is meaningful, protein binding is uninformative.
Reason: The protein binding annotation is too general to be informative. Git's key function is as a scaffold/adaptor protein that brings together specific partners (dPix, PAK, Hpo, Arf79F). The interaction with RtGEF supports Git's molecular adaptor function.
Proposed replacements:
molecular adaptor activity
Supporting Evidence:
PMID:38944040
Epub 2024 Jun 28. Next-generation Drosophila protein interactome map and its functional implications.
|
|
GO:0035332
positive regulation of hippo signaling
|
IGI
PMID:38240353 The Drosophila tumour suppressor Lgl and Vap33 activate the ... |
ACCEPT |
Summary: Git is part of the Vap33-RtGEF-Git-Arf79F module that activates Hippo signaling. Genetic interaction data shows Git knockdown rescues Hippo pathway defects in V-ATPase mutants.
Reason: Well-supported by genetic evidence from PMID:38240353. Vap33 physically interacts with RtGEF and Git, which bind to Hpo. Git knockdown rescues reduced Diap1 expression in Vha68-2 mutant clones, demonstrating Git's role in Hippo pathway activation.
Supporting Evidence:
PMID:38240353
Git knockdown rescues the reduced Hippo pathway target gene expression in Vha68-2 mutant clones
|
|
GO:0007420
brain development
|
IMP
PMID:25792865 A Critical Role of GIT1 in Vertebrate and Invertebrate Brain... |
ACCEPT |
Summary: dGit mutants show decreased central brain size and abnormal mushroom body development, directly demonstrating Git's role in brain development.
Reason: Direct experimental evidence from mutant analysis. dGitex21C mutants show severely decreased central brain size and defects in mushroom body alpha and beta lobe development.
Supporting Evidence:
PMID:25792865
Consistent with Git1-/- mice, dGitex21C Drosophila mutants also exhibited severely decreased central brain size
|
|
GO:0046621
negative regulation of organ growth
|
IGI
PMID:25484297 The GTPase regulatory proteins Pix and Git control tissue gr... |
ACCEPT |
Summary: Git and Pix control tissue growth via the Hippo pathway. Git promotes Hpo activation, which restricts tissue growth. This is a core function linking Git to growth control.
Reason: Strong genetic evidence from PMID:25484297. Git and Pix form an oligomeric scaffold that promotes Hpo dimerization and autophosphorylation, thereby activating Hippo signaling and restricting organ growth.
Supporting Evidence:
PMID:25484297
We show that Pix and Git regulate Hippo-pathway-dependent tissue growth in D. melanogaster and that they do this in parallel to the known upstream regulator Fat cadherin.
|
|
GO:0035332
positive regulation of hippo signaling
|
IGI
PMID:25484297 The GTPase regulatory proteins Pix and Git control tissue gr... |
ACCEPT |
Summary: Git and Pix promote Hpo kinase activation by facilitating Hpo dimerization and autophosphorylation. This is a core signaling function.
Reason: Well-characterized mechanism from PMID:25484297. Pix and Git act as scaffold proteins to promote Hpo dimerization and autophosphorylation of its activation loop, thereby activating the Hippo pathway.
Supporting Evidence:
PMID:25484297
Pix and Git influence activity of the Hpo kinase by acting as a scaffold complex, rather than enzymes, and promote Hpo dimerization and autophosphorylation of Hpo's activation loop.
|
|
GO:0060090
molecular adaptor activity
|
IMP
PMID:25484297 The GTPase regulatory proteins Pix and Git control tissue gr... |
ACCEPT |
Summary: Git functions as a molecular adaptor/scaffold that brings together dPix, PAK, and Hpo to facilitate signaling. This is a core molecular function.
Reason: Well-supported core function. Git acts as a scaffold rather than an enzyme in promoting Hippo pathway activation. Git's adaptor function is also demonstrated in its role bringing together dPix and PAK at adhesion sites.
Supporting Evidence:
PMID:25484297
Pix and Git influence activity of the Hpo kinase by acting as a scaffold complex, rather than enzymes
|
|
GO:1905383
protein localization to presynapse
|
IMP
PMID:24882013 A presynaptic role for the cytomatrix protein GIT in synapti... |
ACCEPT |
Summary: Git is required for proper localization of synaptic proteins (stoned B, synaptotagmin) to the presynapse. dgit mutants show reduced and mislocalized stoned B.
Reason: Direct evidence from PMID:24882013. In dgit mutants, stoned B levels are reduced and the protein is partially mislocalized from the presynaptic compartment.
Supporting Evidence:
PMID:24882013
In Drosophila dgit mutants, stoned B and synaptotagmin levels are reduced and stoned B is partially mislocalized.
|
|
GO:0005515
protein binding
|
IPI
PMID:24882013 A presynaptic role for the cytomatrix protein GIT in synapti... |
MODIFY |
Summary: Git interacts with stonin 2/stoned B at the presynapse. While the specific interaction is meaningful for synaptic function, protein binding is uninformative.
Reason: The protein binding term is too general. The functionally relevant annotation is the specific interaction with stoned B that facilitates synaptic vesicle endocytosis. This interaction supports Git's role as a presynaptic scaffold.
Proposed replacements:
molecular adaptor activity
Supporting Evidence:
PMID:24882013
GIT1 and its D. melanogaster ortholog, dGIT, are shown to directly associate with the endocytic adaptor stonin 2/stoned B.
|
|
GO:0048786
presynaptic active zone
|
IDA
PMID:24882013 A presynaptic role for the cytomatrix protein GIT in synapti... |
ACCEPT |
Summary: Direct localization evidence showing Git at the presynaptic active zone cytomatrix. This is a well-supported subcellular localization.
Reason: Direct assay evidence from PMID:24882013 demonstrating Git localization to the active zone-associated cytomatrix.
Supporting Evidence:
PMID:24882013
Here, we identify the scaffold G protein coupled receptor kinase 2 interacting (GIT) protein as a component of the AZ-associated cytomatrix
|
|
GO:0048788
cytoskeleton of presynaptic active zone
|
IDA
PMID:24882013 A presynaptic role for the cytomatrix protein GIT in synapti... |
ACCEPT |
Summary: Git colocalizes with the cytoskeletal components of the presynaptic active zone. The annotation uses "colocalizes_with" qualifier, appropriately reflecting the colocalization rather than integral association.
Reason: Direct evidence from PMID:24882013 showing Git association with the presynaptic cytomatrix. Git's scaffold function at the active zone involves the cytoskeletal framework.
Supporting Evidence:
PMID:24882013
Here, we identify the scaffold G protein coupled receptor kinase 2 interacting (GIT) protein as a component of the AZ-associated cytomatrix
|
|
GO:0099504
synaptic vesicle cycle
|
IMP
PMID:24882013 A presynaptic role for the cytomatrix protein GIT in synapti... |
ACCEPT |
Summary: Git is required for normal synaptic vesicle cycling. dgit mutants show defects in both exo- and endocytic aspects of the vesicle cycle.
Reason: Direct evidence from mutant analysis in PMID:24882013 showing morphological and functional defects in synaptic vesicle cycling in dgit mutants.
Supporting Evidence:
PMID:24882013
dgit mutants show morphological and functional defects in SV recycling. These data establish a presynaptic role for GIT in SV recycling
|
|
GO:0036465
synaptic vesicle recycling
|
IMP
PMID:24882013 A presynaptic role for the cytomatrix protein GIT in synapti... |
ACCEPT |
Summary: Git is specifically required for synaptic vesicle recycling, the endocytic retrieval phase of the vesicle cycle. This is a core synaptic function.
Reason: Direct evidence from PMID:24882013. Git associates with the endocytic adaptor stoned B and is required for proper SV recycling. This is a core presynaptic function.
Supporting Evidence:
PMID:24882013
dgit mutants show morphological and functional defects in SV recycling. These data establish a presynaptic role for GIT in SV recycling and suggest a connection between the AZ cytomatrix and the endocytic machinery.
|
|
GO:0016319
mushroom body development
|
IMP
PMID:25792865 A Critical Role of GIT1 in Vertebrate and Invertebrate Brain... |
ACCEPT |
Summary: dGit mutants show defects in mushroom body development, with abnormal alpha and beta lobe morphology. This is a well-supported developmental function.
Reason: Direct mutant analysis in PMID:25792865 shows dGitex21C mutants have abnormal mushroom body development, with the most common defect being early termination of one alpha-lobe (58%).
Supporting Evidence:
PMID:25792865
was significantly affected by the deletion of dGit. (Fig. 4C). However, the penetrance of this impaired mushroom body development was incomplete
|
|
GO:0005096
GTPase activator activity
|
ISM
PMID:12618308 GAPs galore! A survey of putative Ras superfamily GTPase act... |
ACCEPT |
Summary: ISM annotation based on computational survey of GAP domains. Git is correctly identified as an ARF-GAP based on sequence analysis.
Reason: The computational survey in PMID:12618308 correctly identified Git (CG16728) as encoding an ARF-GAP based on domain analysis. This is consistent with the experimentally validated function.
Supporting Evidence:
PMID:12618308
To facilitate genetic analysis, I surveyed Drosophila and human sequence databases for genes predicting proteins related to GAPs for Ras superfamily members
|
|
GO:0005737
cytoplasm
|
IDA
PMID:18996366 The Drosophila homologue of Arf-GAP GIT1, dGIT, is required ... |
ACCEPT |
Summary: Direct localization evidence showing Git in the cytoplasm of embryonic muscle cells. This is a core localization.
Reason: Direct assay evidence from PMID:18996366 showing dGit protein in the cytoplasm of embryonic muscle syncytia.
Supporting Evidence:
PMID:18996366
The dGIT protein is concentrated at the termini of growing myotubes and localizes to muscle attachment sites in late stage embryos
|
|
GO:0007525
somatic muscle development
|
IMP
PMID:18996366 The Drosophila homologue of Arf-GAP GIT1, dGIT, is required ... |
ACCEPT |
Summary: dGit is required for proper muscle morphogenesis and myotube guidance during embryogenesis. dgit mutants show muscle patterning defects.
Reason: Core developmental function supported by mutant analysis in PMID:18996366. dgit mutant embryos show muscle patterning defects including aberrant targeting in subsets of muscles, particularly ventral oblique muscles VO5 and VO6.
Supporting Evidence:
PMID:18996366
dgit mutant embryos show muscle patterning defects and aberrant targeting in subsets of their muscles
|
|
GO:0031252
cell leading edge
|
IDA
PMID:18996366 The Drosophila homologue of Arf-GAP GIT1, dGIT, is required ... |
ACCEPT |
Summary: Git localizes to the leading edge of growing myotubes during muscle development. This is a core localization related to Git's role in cell motility and morphogenesis.
Reason: Direct localization evidence from PMID:18996366 showing Git enrichment at the leading edge of growing myotubes, particularly at the base of membrane protrusions.
Supporting Evidence:
PMID:18996366
The dGIT protein is concentrated at the termini of growing myotubes
|
|
GO:0035591
signaling adaptor activity
|
NAS | NEW |
Summary: Added to align core_functions with existing annotations.
Reason: Core function term not present in existing_annotations.
|
|
GO:0110020
regulation of actomyosin structure organization
|
NAS | NEW |
Summary: Added to align core_functions with existing annotations.
Reason: Core function term not present in existing_annotations.
|
|
TEMP:dPix-Git-PAK_complex
dPix-Git-PAK complex
|
NAS | NEW |
Summary: Added to align core_functions with existing annotations.
Reason: Core function complex term not present in existing_annotations.
|
The research report should be a detailed narrative explaining the function, biological processes, and localization of the gene product. Citations should be given for all claims.
You should prioritize authoritative reviews and primary scientific literature when conducting research. You can supplement
this with annotations you find in gene/protein databases, but these can be outdated or inaccurate.
We are specifically interested in the primary function of the gene - for enzymes, what reaction is catalyzed, and what is the substrate specificity? For transporters, what is the substrate? For structural proteins or adapters, what is the broader structural role? For signaling molecules, what is the role in the pathway.
We are interested in where in or outside the cell the gene product carries out its function.
We are also interested in the signaling or biochemical pathways in which the gene functions. We are less interested in broad pleiotropic effects, except where these elucidate the precise role.
Include evidence where possible. We are interested in both experimental evidence as well as inference from structure, evolution, or bioinformatic analysis. Precise studies should be prioritized over high-throughput, where available.
Title: Functional Annotation of Drosophila Git (CG16728; UniProt Q95RG8): ARF-GAP scaffolding with dPix–PAK at integrin-linked adhesions and emerging roles in Hippo signaling
Abstract
Git (CG16728) in Drosophila melanogaster encodes an ARF GTPase-activating protein that scaffolds with the Rho-family GEF dPix and the serine/threonine kinase PAK at focal-adhesion-like sites. In epithelia, the dPix–Git complex localizes basally and modulates myosin II to maintain tissue architecture; in developing muscles, integrin→Git→PAK signaling suppresses filopodia during muscle–tendon attachment. Recent work implicates a Vap33–RtGEF(dPix)–Git–Arf79F module in activating Hippo signaling and coordinating with V-ATPase-dependent endolysosomal control. This report synthesizes function, localization, pathway integration, and recent developments (with emphasis on 2023) with quantitative evidence and direct citations.
Identity verification and gene/protein context
- Gene/protein match: Git corresponds to Drosophila dGIT/CG16728 and functions as an ARF GTPase-activating protein that forms a conserved PIX(dPix)–GIT–PAK complex; Drosophila studies use endogenous tags and functional genetics to define Git’s role and targeting (via a paxillin-binding C-terminus) to basal focal-adhesion-like structures (May 22, 2019; PLOS Genetics) (dent2019thedpixgitcomplex pages 2-4, dent2019thedpixgitcomplex pages 13-14).
- Organism: All experimental evidence cited is in Drosophila melanogaster (egg chamber epithelium, embryonic/larval tissues, developing muscles) (dent2019thedpixgitcomplex pages 8-10, dent2019thedpixgitcomplex pages 6-8, richier2018integrinsignalingdownregulates pages 6-8, dent2019thedpixgitcomplex pages 10-13).
- Domains/complex features supported in Drosophila literature: ARF-GAP family assignment; paxillin-binding domain (PBD) in Git’s C-terminus required for basal/focal targeting; recruitment of dPix and PAK into a functional module downstream of integrins (2018–2019 primary literature) (dent2019thedpixgitcomplex pages 13-14, richier2018integrinsignalingdownregulates pages 6-8, dent2019thedpixgitcomplex pages 16-17, dent2019thedpixgitcomplex pages 10-13).
Key concepts and definitions (current understanding)
- ARF GTPase-activating protein (ARF-GAP): Proteins that stimulate GTP hydrolysis on ARF small GTPases to inactivate them. Git is an ARF-GAP that scaffolds with dPix (Rho-family GEF) and PAK to coordinate adhesion and cytoskeletal signaling in vivo (dent2019thedpixgitcomplex pages 2-4, dent2019thedpixgitcomplex pages 27-28, dent2019thedpixgitcomplex pages 16-17).
- PIX–GIT–PAK module: A conserved adhesion-localized complex. In Drosophila epithelia, Git targets the complex basally via a paxillin-binding domain, and dPix recruits/activates PAK to temper myosin II contractility and preserve epithelial organization (PLOS Genetics, 2019; DOI: https://doi.org/10.1371/journal.pgen.1008083) (dent2019thedpixgitcomplex pages 6-8, dent2019thedpixgitcomplex pages 2-4, dent2019thedpixgitcomplex pages 16-17).
- Integrin-linked adhesion signaling: In developing muscles, integrin signaling relies on Git to recruit PAK; Git/PAK act downstream of integrins to suppress filopodia as myotubes establish tendon attachment (Journal of Cell Science, Aug 2018; DOI: https://doi.org/10.1242/jcs.217133) (richier2018integrinsignalingdownregulates pages 6-8, richier2018integrinsignalingdownregulates pages 8-11).
- Hippo pathway connection: A 2023 preprint identifies Vap33–RtGEF(dPix)–Git–Arf79F interactions that stimulate Hippo signaling, with genetic evidence placing Git in a module that counteracts Arf79F (ARF1 ortholog) and coordinates with V-ATPase-driven vesicle acidification (bioRxiv, July 10, 2023; DOI: https://doi.org/10.1101/2023.07.10.548302) (portela2023thedrosophilatumour pages 1-4, portela2023thedrosophilatumour pages 8-11, portela2023thedrosophilatumour pages 11-14, portela2023thedrosophilatumour pages 25-28).
Recent developments and latest research (priority 2023–2024)
- Hippo activation via Vap33–RtGEF–Git–Arf79F: AP-MS in embryos showed Vap33 binds RtGEF (dPix) and Git as high-confidence interactors; co-IPs confirm Vap33–RtGEF and Vap33–Hpo associations; in situ proximity ligation assays (PLAs) detect Git–Vap33, Git–Arf79F, Arf79F–Hpo proximity in larval epithelia. Functionally, Vap33 overexpression rescues elevated Diap1 in RtGEF mutant clones; Git RNAi rescues reduced Diap1 in Vha68-2 (V-ATPase) mutants; Arf79F knockdown rescues lgl mutant Hippo defects. Model: Lgl/Vap33 promote RtGEF/Git to restrain Arf79F, thereby activating Hpo (bioRxiv, 2023; URL above; posted July 10, 2023) (portela2023thedrosophilatumour pages 1-4, portela2023thedrosophilatumour pages 8-11, portela2023thedrosophilatumour pages 11-14, portela2023thedrosophilatumour pages 25-28).
- Pathway crosstalk with V-ATPase: V-ATPase activity negatively regulates Hippo signaling (reduced Yki nuclear export/target repression). Vap33 activates Hippo and counteracts V-ATPase; Git genetically modifies Hippo output in the V-ATPase mutant context (bioRxiv, 2023) (portela2023thedrosophilatumour pages 4-8, portela2023thedrosophilatumour pages 11-14, portela2023thedrosophilatumour pages 21-25).
Current applications and real-world implementations
- Epithelial morphogenesis assays: Endogenous tagging of dpix and git, live/confocal imaging, and quantitative morphometrics/pMRLC staining in egg chambers provide a tractable system to interrogate adhesion–cytoskeletal control of tissue architecture and myosin regulation in vivo (PLOS Genetics, 2019) (dent2019thedpixgitcomplex pages 8-10, dent2019thedpixgitcomplex pages 6-8, dent2019thedpixgitcomplex pages 10-13).
- Muscle–tendon attachment model: Quantitative time-lapse analysis of filopodial dynamics in LT myotubes under integrin, Git, and Pak perturbations offers a live model for adhesion-dependent protrusion control (J Cell Sci, 2018) (richier2018integrinsignalingdownregulates pages 6-8, richier2018integrinsignalingdownregulates pages 8-11).
- Hippo signaling readouts: Eye-disc mosaic clone systems measuring Diap1 and ex-lacZ, combined with AP-MS/PLA, enable in vivo mapping of Git-centered complexes that tune growth signaling (bioRxiv, 2023) (portela2023thedrosophilatumour pages 4-8, portela2023thedrosophilatumour pages 8-11, portela2023thedrosophilatumour pages 18-21).
Expert opinions and analysis from authoritative sources
- Adhesion-scaffold perspective: Primary in vivo evidence supports Git as a paxillin-directed ARF-GAP scaffold that positions dPix and PAK at focal-adhesion-like domains to modulate actomyosin and morphogenesis; the necessity of Git’s C-terminal paxillin-binding domain for basal targeting underscores conserved adhesion logic (PLOS Genetics, 2019) (dent2019thedpixgitcomplex pages 13-14, dent2019thedpixgitcomplex pages 16-17, dent2019thedpixgitcomplex pages 10-13).
- Signaling integration: 2018–2019 studies establish Git at the convergence of integrin adhesions, Rho-family signaling, and PAK-mediated actin regulation; 2023 extends this to growth control via Hippo, implicating ARF GTPases (Arf79F) and endolysosomal acidification (V-ATPase) in Git-centered control nodes (richier2018integrinsignalingdownregulates pages 6-8, dent2019thedpixgitcomplex pages 16-17, portela2023thedrosophilatumour pages 1-4, portela2023thedrosophilatumour pages 11-14).
Relevant statistics and data from recent studies
- Epithelial myosin regulation (egg chamber): dpix or git loss increases phospho-MRLC (pMRLC) intensity at basal membranes by approximately two-fold and also elevates apical pMRLC (~1.5–2-fold), correlating with lateral junction collapse and multilayering; reducing RhoGEF2 dosage rescues egg production and morphology (PLOS Genetics, 2019; DOI above) (dent2019thedpixgitcomplex pages 8-10, dent2019thedpixgitcomplex pages 6-8).
- Localization: Endogenous dpix-Venus and git-tRFP co-localize basally in polarized, filament-like patterns; deletion of Git’s paxillin-binding C-terminus abolishes basal enrichment, demonstrating the targeting mechanism (PLOS Genetics, 2019) (dent2019thedpixgitcomplex pages 10-13, dent2019thedpixgitcomplex pages 16-17).
- Muscle filopodia suppression: Integrin diβ gain-of-function prematurely suppresses filopodia at stage 15, but this suppression fails in Git or Pak maternal+zygotic mutants (quantified filopodia counts and lengths), placing Git/PAK downstream of integrins (J Cell Sci, Aug 2018; DOI above) (richier2018integrinsignalingdownregulates pages 6-8, richier2018integrinsignalingdownregulates pages 8-11).
- Hippo pathway quantification: In eye discs, Vha68-2 knockdown reduces ex-lacZ (Yki target) and Yki levels; Vap33 overexpression reduces Diap1; Git RNAi rescues Diap1 reduction in Vha68-2 mutants; Arf79F RNAi or Sec71DN rescues elevated Diap1 in lgl mutants (bioRxiv, 2023) (portela2023thedrosophilatumour pages 4-8, portela2023thedrosophilatumour pages 11-14, portela2023thedrosophilatumour pages 25-28).
Mechanistic function, pathways, and localization of Git
- Biochemical function and substrate inference: Git is an ARF-GAP; mammalian orthologs inactivate ARF1. In Drosophila, genetic and proximity data connect Git to Arf79F (ARF1 ortholog) and Hpo, supporting a model where Git restrains Arf79F to promote Hippo activation; this is bolstered by the observation that Arf79F knockdown reduces Diap1 and is epistatic to lgl (bioRxiv, 2023). While direct in vivo ARF-GAP catalytic assays for Drosophila Git substrates are not presented in these studies, the genetic and interaction data fit ARF1/Arf79F as the physiologic target class (portela2023thedrosophilatumour pages 8-11, portela2023thedrosophilatumour pages 11-14).
- Adhesion and cytoskeletal control: In epithelia, dPix–Git localizes to basal, focal-adhesion-like structures and leading edges; Git’s paxillin-binding domain mediates targeting; the complex limits myosin II activity and ensures monolayer integrity and proper egg chamber elongation (PLOS Genetics, 2019) (dent2019thedpixgitcomplex pages 10-13, dent2019thedpixgitcomplex pages 16-17).
- Integrin-mediated protrusion control: In developing muscles, Git/PAK execute integrin signals to terminate exploratory filopodia as attachments form, linking adhesion maturation to actin remodeling (J Cell Sci, 2018) (richier2018integrinsignalingdownregulates pages 6-8, richier2018integrinsignalingdownregulates pages 8-11).
- Hippo growth control: RtGEF(dPix)–Git associates with Hpo in a Vap33-dependent network; Git modulates Hippo outputs alongside V-ATPase activity, positioning Git at the interface of adhesion-cytoskeletal cues and growth control (bioRxiv, 2023) (portela2023thedrosophilatumour pages 1-4, portela2023thedrosophilatumour pages 8-11, portela2023thedrosophilatumour pages 11-14, portela2023thedrosophilatumour pages 25-28).
Open areas and cautions
- Direct catalytic measurements in fly tissues (ARF-GAP activity and ARF substrate specificity) remain to be demonstrated in vivo in Drosophila; current evidence is genetic, localization, and interaction-based, with inference from mammalian GIT–ARF1 relationships (portela2023thedrosophilatumour pages 8-11, portela2023thedrosophilatumour pages 11-14).
- Tissue breadth: Strong in vivo evidence exists for follicular epithelium and muscle–tendon contexts; synaptic roles for Git specifically were not directly documented in the provided evidence set, although the dPix–Git–PAK axis is broadly conserved and has been linked to synaptic biology in other systems (dent2019thedpixgitcomplex pages 28-29).
Supporting artifact summarizing key findings
| Aspect | Finding / Claim | Tissue / Cell context | Experimental evidence (brief methods / metrics) | Partners / Pathway | Date & Venue | URL / DOI | Citation ID(s) |
|---|---|---|---|---|---:|---|---|
| Identity / complex (GIT as ARF GAP; PIX/PAK; paxillin targeting) | Git (CG16728, dGIT) is an ARF GTPase-activating protein that forms a conserved PIX–GIT scaffold with PIX/dPix and recruits PAK; Git C-terminal paxillin‑binding domain (PBD) is required for basal/focal targeting. | Drosophila (general; epithelial and developmental contexts) | Endogenous CRISPR-tagging, transgenes, localisation and domain-deletion (ΔPBD) analysis showing loss of basal targeting when PBD deleted; biochemical/interaction references. | dPix (PIX), PAK, paxillin, integrin-linked adhesome | May 22, 2019 — PLOS Genetics (Dent et al., 2019) | https://doi.org/10.1371/journal.pgen.1008083 | (dent2019thedpixgitcomplex pages 2-4, dent2019thedpixgitcomplex pages 13-14, dent2019thedpixgitcomplex pages 27-28) |
| Basal / focal-adhesion-like localization in follicular epithelium | dPix–Git complex is predominantly basally enriched on filament-like structures and at leading edges of migrating follicle cells; Git directs dPix localisation via paxillin-binding. | Drosophila follicular epithelium (egg chamber) | Live imaging and confocal of CRISPR-tagged dpix-Venus and git-tRFP; planar-polarised intensity measurements and mutant clones show loss of basal enrichment in git mutants or ΔPBD constructs. | Focal-adhesion-like sites; integrin → paxillin targeting | May 22, 2019 — PLOS Genetics | https://doi.org/10.1371/journal.pgen.1008083 | (dent2019thedpixgitcomplex pages 10-13, dent2019thedpixgitcomplex pages 16-17) |
| Regulation of myosin and epithelial morphogenesis | dPix–Git limits non-muscle myosin II activation; dpix/git mutants show elevated pMRLC (basal ~2×; apical ~1.5–2×), lateral junction contraction, multilayering and defective egg chamber elongation; reducing myosin activators rescues phenotypes. | Follicular epithelium (egg chambers) | Mosaic clone analysis, pMRLC immunostaining with quantitative pixel‑intensity measurements; genetic suppression (rhoGEF2 heterozygosity) rescues egg production/morphology. | Pak (antagonises myosin), Rho pathway (rhoGEF2, rho1) | May 22, 2019 — PLOS Genetics | https://doi.org/10.1371/journal.pgen.1008083 | (dent2019thedpixgitcomplex pages 8-10, dent2019thedpixgitcomplex pages 6-8, dent2019thedpixgitcomplex pages 27-28) |
| Integrin → Git → Pak suppression of filopodia (muscle–tendon attachment) | Integrin signalling activates Git to recruit Pak and thereby downregulate filopodia at myotube tips; loss of Git or Pak prevents integrin-induced filopodia suppression producing excessive/long filopodia. | Drosophila lateral transverse (LT) muscles / myotube tips during muscle–tendon attachment | Genetic loss-of-function (maternal+zygotic Git excision allele, pak mutants), live time‑lapse imaging and quantitative filopodia counts/length; integrin gain-of-function (diβ) fails to suppress filopodia in Git or Pak mutants. | Integrin → Git → PIX/PAK axis; focal-adhesion elements (paxillin) | Aug 2018 — Journal of Cell Science (Richier et al., 2018) | https://doi.org/10.1242/jcs.217133 | (richier2018integrinsignalingdownregulates pages 6-8, richier2018integrinsignalingdownregulates pages 13-16, richier2018integrinsignalingdownregulates pages 8-11) |
| Hippo pathway regulation via Vap33–RtGEF(dPix)–Git–Arf79F module (2023 preprint) | Vap33 physically associates with RtGEF (Pix) and Git and with Hpo; Arf79F (Arf1) interacts with Hpo and Git; Vap33 overexpression rescues elevated Diap1 in RtGEF mutants; Git knockdown rescues Vha68-2 (V-ATPase) phenotypes; Arf79F knockdown rescues lgl mutant Hippo defects — model: Lgl/Vap33 → RtGEF/Git inhibits Arf79F and activates Hpo. | Drosophila embryonic and larval epithelia, eye discs; in vivo AP‑MS, S2 cells, larval tissues | AP‑MS from Vap33‑YFP embryos (SAINT analyses), co‑IP in S2 cells, in situ PLA in larval tissues, genetic mosaics measuring Diap1 / ex‑lacZ (Yki target) and adult eye phenotypes; rescue assays (Vap33 o/e, Git RNAi, Arf79F RNAi/Sec71DN). | Vap33, RtGEF/dPix, Git, Arf79F (Arf1), Hpo (Hippo pathway); V‑ATPase interaction (Vha68‑2) | bioRxiv preprint — July 10, 2023 (Portela et al., 2023) | https://doi.org/10.1101/2023.07.10.548302 | (portela2023thedrosophilatumour pages 1-4, portela2023thedrosophilatumour pages 8-11, portela2023thedrosophilatumour pages 11-14, portela2023thedrosophilatumour pages 18-21, portela2023thedrosophilatumour pages 25-28) |
| Genetic interactions / rescues (rhoGEF2, Vha68‑2, Arf79F) | Heterozygosity for rhoGEF2 partially rescues dpix/git egg production defects; Git knockdown partially rescues reduced Diap1 in Vha68‑2 mutant clones; Arf79F knockdown or Sec71DN expression rescues elevated Diap1 and adult-eye defects in lgl mutants. | Egg chambers, eye imaginal discs (mosaic clones) | Genetic interaction tests (mosaic clones, RNAi, dominant negatives), Diap1 / ex‑lacZ pixel‑intensity quantification, adult-eye phenotype scoring. | RhoGEF2 / Rho1 (myosin activators), V‑ATPase (Vha68‑2), Arf79F (Arf1) | 2019 (Dent et al.) and 2023 (Portela et al., preprint) | Dent DOI: https://doi.org/10.1371/journal.pgen.1008083; Portela DOI: https://doi.org/10.1101/2023.07.10.548302 | (dent2019thedpixgitcomplex pages 8-10, dent2019thedpixgitcomplex pages 16-17, portela2023thedrosophilatumour pages 11-14, portela2023thedrosophilatumour pages 25-28) |
| Quantitative data (selected) | pMRLC: ~2‑fold increase at basal membranes and ~1.5–2‑fold apical increase in dpix/git mutants; Vha68‑2 knockdown reduces ex‑lacZ (Yki reporter) and Yki nuclear staining; Vap33 o/e reduces Diap1 levels in clones (quantified pixel intensities; ANOVA p‑values reported). | Follicular epithelium; eye discs | pMRLC and Diap1/ex‑lacZ pixel‑intensity quantification from confocal images; statistical tests (D'Agostino‑Pearson, t tests, ANOVA with Bonferroni). | Myosin (pMRLC), Hippo readouts (Diap1, ex‑lacZ), V‑ATPase manipulations | Dent et al. 2019 (pMRLC quant); Portela et al. 2023 (ex‑lacZ / Diap1 quant; reported p‑values) | Dent DOI: https://doi.org/10.1371/journal.pgen.1008083; Portela DOI: https://doi.org/10.1101/2023.07.10.548302 | (dent2019thedpixgitcomplex pages 8-10, portela2023thedrosophilatumour pages 1-4, portela2023thedrosophilatumour pages 8-11) |
Table: A concise, evidence‑linked summary table of major experimental findings about Drosophila Git (CG16728, UniProt Q95RG8), including identity/domains, localization, functional roles, pathways, quantitative phenotypes, and primary citations from the provided context.
References with URLs and dates
- Dent LG et al. The dPix–Git complex is essential to coordinate epithelial morphogenesis and regulate myosin during Drosophila egg chamber development. PLOS Genetics. Published May 22, 2019. DOI: https://doi.org/10.1371/journal.pgen.1008083 (dent2019thedpixgitcomplex pages 8-10, dent2019thedpixgitcomplex pages 6-8, dent2019thedpixgitcomplex pages 2-4, dent2019thedpixgitcomplex pages 10-13, dent2019thedpixgitcomplex pages 13-14, dent2019thedpixgitcomplex pages 16-17).
- Richier B et al. Integrin signaling downregulates filopodia during muscle–tendon attachment. Journal of Cell Science. Published Aug 2018. DOI: https://doi.org/10.1242/jcs.217133 (richier2018integrinsignalingdownregulates pages 6-8, richier2018integrinsignalingdownregulates pages 13-16, richier2018integrinsignalingdownregulates pages 8-11).
- Portela M et al. The Drosophila Tumour Suppressor Lgl and Vap33 activate the Hippo pathway by a dual mechanism, involving RtGEF/Git/Arf79F and inhibition of the V-ATPase. bioRxiv preprint. Posted July 10, 2023. DOI: https://doi.org/10.1101/2023.07.10.548302 (portela2023thedrosophilatumour pages 1-4, portela2023thedrosophilatumour pages 4-8, portela2023thedrosophilatumour pages 8-11, portela2023thedrosophilatumour pages 11-14, portela2023thedrosophilatumour pages 18-21, portela2023thedrosophilatumour pages 21-25, portela2023thedrosophilatumour pages 25-28).
Conclusion
Drosophila Git (CG16728) is a focal-adhesion–targeted ARF-GAP scaffold that partners with dPix and PAK to tune actomyosin and morphogenesis, and it integrates integrin signals to regulate protrusive behavior during muscle–tendon attachment. Emerging 2023 data connect Git to Hippo growth control through a Vap33–RtGEF–Git–Arf79F axis, coordinated with V-ATPase-regulated vesicle acidification. Together, these studies position Git as a key node linking adhesion mechanics, Rho/ARF GTPase signaling, and tissue growth control in vivo (dent2019thedpixgitcomplex pages 6-8, richier2018integrinsignalingdownregulates pages 6-8, portela2023thedrosophilatumour pages 11-14).
References
(dent2019thedpixgitcomplex pages 2-4): Lucas G. Dent, Samuel A. Manning, Benjamin Kroeger, Audrey M. Williams, Abdul Jabbar Saiful Hilmi, Luke Crea, Shu Kondo, Sally Horne-Badovinac, and Kieran F. Harvey. The dpix-git complex is essential to coordinate epithelial morphogenesis and regulate myosin during drosophila egg chamber development. PLOS Genetics, 15:e1008083, May 2019. URL: https://doi.org/10.1371/journal.pgen.1008083, doi:10.1371/journal.pgen.1008083. This article has 11 citations and is from a domain leading peer-reviewed journal.
(dent2019thedpixgitcomplex pages 13-14): Lucas G. Dent, Samuel A. Manning, Benjamin Kroeger, Audrey M. Williams, Abdul Jabbar Saiful Hilmi, Luke Crea, Shu Kondo, Sally Horne-Badovinac, and Kieran F. Harvey. The dpix-git complex is essential to coordinate epithelial morphogenesis and regulate myosin during drosophila egg chamber development. PLOS Genetics, 15:e1008083, May 2019. URL: https://doi.org/10.1371/journal.pgen.1008083, doi:10.1371/journal.pgen.1008083. This article has 11 citations and is from a domain leading peer-reviewed journal.
(dent2019thedpixgitcomplex pages 8-10): Lucas G. Dent, Samuel A. Manning, Benjamin Kroeger, Audrey M. Williams, Abdul Jabbar Saiful Hilmi, Luke Crea, Shu Kondo, Sally Horne-Badovinac, and Kieran F. Harvey. The dpix-git complex is essential to coordinate epithelial morphogenesis and regulate myosin during drosophila egg chamber development. PLOS Genetics, 15:e1008083, May 2019. URL: https://doi.org/10.1371/journal.pgen.1008083, doi:10.1371/journal.pgen.1008083. This article has 11 citations and is from a domain leading peer-reviewed journal.
(dent2019thedpixgitcomplex pages 6-8): Lucas G. Dent, Samuel A. Manning, Benjamin Kroeger, Audrey M. Williams, Abdul Jabbar Saiful Hilmi, Luke Crea, Shu Kondo, Sally Horne-Badovinac, and Kieran F. Harvey. The dpix-git complex is essential to coordinate epithelial morphogenesis and regulate myosin during drosophila egg chamber development. PLOS Genetics, 15:e1008083, May 2019. URL: https://doi.org/10.1371/journal.pgen.1008083, doi:10.1371/journal.pgen.1008083. This article has 11 citations and is from a domain leading peer-reviewed journal.
(richier2018integrinsignalingdownregulates pages 6-8): Benjamin Richier, Yoshiko Inoue, Ulrich Dobramysl, Jonathan Friedlander, Nicholas H. Brown, and Jennifer L. Gallop. Integrin signaling downregulates filopodia during muscle–tendon attachment. Journal of Cell Science, Aug 2018. URL: https://doi.org/10.1242/jcs.217133, doi:10.1242/jcs.217133. This article has 18 citations and is from a domain leading peer-reviewed journal.
(dent2019thedpixgitcomplex pages 10-13): Lucas G. Dent, Samuel A. Manning, Benjamin Kroeger, Audrey M. Williams, Abdul Jabbar Saiful Hilmi, Luke Crea, Shu Kondo, Sally Horne-Badovinac, and Kieran F. Harvey. The dpix-git complex is essential to coordinate epithelial morphogenesis and regulate myosin during drosophila egg chamber development. PLOS Genetics, 15:e1008083, May 2019. URL: https://doi.org/10.1371/journal.pgen.1008083, doi:10.1371/journal.pgen.1008083. This article has 11 citations and is from a domain leading peer-reviewed journal.
(dent2019thedpixgitcomplex pages 16-17): Lucas G. Dent, Samuel A. Manning, Benjamin Kroeger, Audrey M. Williams, Abdul Jabbar Saiful Hilmi, Luke Crea, Shu Kondo, Sally Horne-Badovinac, and Kieran F. Harvey. The dpix-git complex is essential to coordinate epithelial morphogenesis and regulate myosin during drosophila egg chamber development. PLOS Genetics, 15:e1008083, May 2019. URL: https://doi.org/10.1371/journal.pgen.1008083, doi:10.1371/journal.pgen.1008083. This article has 11 citations and is from a domain leading peer-reviewed journal.
(dent2019thedpixgitcomplex pages 27-28): Lucas G. Dent, Samuel A. Manning, Benjamin Kroeger, Audrey M. Williams, Abdul Jabbar Saiful Hilmi, Luke Crea, Shu Kondo, Sally Horne-Badovinac, and Kieran F. Harvey. The dpix-git complex is essential to coordinate epithelial morphogenesis and regulate myosin during drosophila egg chamber development. PLOS Genetics, 15:e1008083, May 2019. URL: https://doi.org/10.1371/journal.pgen.1008083, doi:10.1371/journal.pgen.1008083. This article has 11 citations and is from a domain leading peer-reviewed journal.
(richier2018integrinsignalingdownregulates pages 8-11): Benjamin Richier, Yoshiko Inoue, Ulrich Dobramysl, Jonathan Friedlander, Nicholas H. Brown, and Jennifer L. Gallop. Integrin signaling downregulates filopodia during muscle–tendon attachment. Journal of Cell Science, Aug 2018. URL: https://doi.org/10.1242/jcs.217133, doi:10.1242/jcs.217133. This article has 18 citations and is from a domain leading peer-reviewed journal.
(portela2023thedrosophilatumour pages 1-4): Marta Portela, Swastik Mukherjee, Sayantanee Paul, John E. La Marca, Linda M. Parsons, Alexey Veraksa, and Helena E. Richardson. The drosophila tumour suppressor lgl and vap33 activate the hippo pathway by a dual mechanism, involving rtgef/git/arf79f and inhibition of the v-atpase. bioRxiv, Jul 2023. URL: https://doi.org/10.1101/2023.07.10.548302, doi:10.1101/2023.07.10.548302. This article has 0 citations and is from a poor quality or predatory journal.
(portela2023thedrosophilatumour pages 8-11): Marta Portela, Swastik Mukherjee, Sayantanee Paul, John E. La Marca, Linda M. Parsons, Alexey Veraksa, and Helena E. Richardson. The drosophila tumour suppressor lgl and vap33 activate the hippo pathway by a dual mechanism, involving rtgef/git/arf79f and inhibition of the v-atpase. bioRxiv, Jul 2023. URL: https://doi.org/10.1101/2023.07.10.548302, doi:10.1101/2023.07.10.548302. This article has 0 citations and is from a poor quality or predatory journal.
(portela2023thedrosophilatumour pages 11-14): Marta Portela, Swastik Mukherjee, Sayantanee Paul, John E. La Marca, Linda M. Parsons, Alexey Veraksa, and Helena E. Richardson. The drosophila tumour suppressor lgl and vap33 activate the hippo pathway by a dual mechanism, involving rtgef/git/arf79f and inhibition of the v-atpase. bioRxiv, Jul 2023. URL: https://doi.org/10.1101/2023.07.10.548302, doi:10.1101/2023.07.10.548302. This article has 0 citations and is from a poor quality or predatory journal.
(portela2023thedrosophilatumour pages 25-28): Marta Portela, Swastik Mukherjee, Sayantanee Paul, John E. La Marca, Linda M. Parsons, Alexey Veraksa, and Helena E. Richardson. The drosophila tumour suppressor lgl and vap33 activate the hippo pathway by a dual mechanism, involving rtgef/git/arf79f and inhibition of the v-atpase. bioRxiv, Jul 2023. URL: https://doi.org/10.1101/2023.07.10.548302, doi:10.1101/2023.07.10.548302. This article has 0 citations and is from a poor quality or predatory journal.
(portela2023thedrosophilatumour pages 4-8): Marta Portela, Swastik Mukherjee, Sayantanee Paul, John E. La Marca, Linda M. Parsons, Alexey Veraksa, and Helena E. Richardson. The drosophila tumour suppressor lgl and vap33 activate the hippo pathway by a dual mechanism, involving rtgef/git/arf79f and inhibition of the v-atpase. bioRxiv, Jul 2023. URL: https://doi.org/10.1101/2023.07.10.548302, doi:10.1101/2023.07.10.548302. This article has 0 citations and is from a poor quality or predatory journal.
(portela2023thedrosophilatumour pages 21-25): Marta Portela, Swastik Mukherjee, Sayantanee Paul, John E. La Marca, Linda M. Parsons, Alexey Veraksa, and Helena E. Richardson. The drosophila tumour suppressor lgl and vap33 activate the hippo pathway by a dual mechanism, involving rtgef/git/arf79f and inhibition of the v-atpase. bioRxiv, Jul 2023. URL: https://doi.org/10.1101/2023.07.10.548302, doi:10.1101/2023.07.10.548302. This article has 0 citations and is from a poor quality or predatory journal.
(portela2023thedrosophilatumour pages 18-21): Marta Portela, Swastik Mukherjee, Sayantanee Paul, John E. La Marca, Linda M. Parsons, Alexey Veraksa, and Helena E. Richardson. The drosophila tumour suppressor lgl and vap33 activate the hippo pathway by a dual mechanism, involving rtgef/git/arf79f and inhibition of the v-atpase. bioRxiv, Jul 2023. URL: https://doi.org/10.1101/2023.07.10.548302, doi:10.1101/2023.07.10.548302. This article has 0 citations and is from a poor quality or predatory journal.
(dent2019thedpixgitcomplex pages 28-29): Lucas G. Dent, Samuel A. Manning, Benjamin Kroeger, Audrey M. Williams, Abdul Jabbar Saiful Hilmi, Luke Crea, Shu Kondo, Sally Horne-Badovinac, and Kieran F. Harvey. The dpix-git complex is essential to coordinate epithelial morphogenesis and regulate myosin during drosophila egg chamber development. PLOS Genetics, 15:e1008083, May 2019. URL: https://doi.org/10.1371/journal.pgen.1008083, doi:10.1371/journal.pgen.1008083. This article has 11 citations and is from a domain leading peer-reviewed journal.
(richier2018integrinsignalingdownregulates pages 13-16): Benjamin Richier, Yoshiko Inoue, Ulrich Dobramysl, Jonathan Friedlander, Nicholas H. Brown, and Jennifer L. Gallop. Integrin signaling downregulates filopodia during muscle–tendon attachment. Journal of Cell Science, Aug 2018. URL: https://doi.org/10.1242/jcs.217133, doi:10.1242/jcs.217133. This article has 18 citations and is from a domain leading peer-reviewed journal.
Exported on March 22, 2026 at 02:12 AM
Organism: Drosophila melanogaster
Sequence:
MCFASSIIEAHRKLFIAPPDLDHSDPATPTISTRSKMPRGKSRLQTEVCGDCGAGDPSWASINRGILLCADCCSVHRSLGRHISIVKSLRQGNWEPSVLNFVNSLNAHGANSVWEHHLLDGSTNSTGGKHVPRWRKPTPKDALHPTKSDFIKAKHVNLTFVLKPSLQDDDDGNGSAGCLEQELSRQLHASVRTSNLETSLRFLVQGADPNYYHEDKLSTPLHMAAKFGQASQIEMLLIYGADVNALDGNGMTPLELARANNHNTIAERLLDAMYDVTDRIITFLGGKKPDHASGRHMIIPDANGADISEQLKIARGKLQLVPNKMFEELVMDLYDEVDRRECEAIWSTSTLNADHATVPFLPANPFLSATRNQGRQKLARFNRAEFTGLLTDVLVDAMRRQNMANLRPMDAPVAGHQSLQSLPYANNSMLLGSFEQGGHDPNLSDDEPIYDPVASDDDYAPVPPMAQQAIVHTPPRSANSHNEMETLRKQLNDYKSEINQLKNVVQMLSSENTQLKSKFSSASNNSVYDEPLRIDLSLSSPDTEHEPLSLPEGGTANGESGSSNDSSNQSTIKRPASMYERRLVPNVAKGNTDIRNTTSMYQMAGDGKPFGEEVKVRSDLVTRRLKELIRAMQPVPEDQKQSIAPHGELIRSAVTDLIALYANLPPNASDPSRETLKLLTRQNILIQHECENLQKAIEADDKQAIQKNTLEVRDCAFHIASAIKTLVLQFY
I begin with the InterPro architecture. The N-terminus harbors an ArfGAP catalytic core: IPR001164 (Arf GTPase activating protein domain, residues 32–168) sits within IPR038508 (ArfGAP domain superfamily, residues 31–166) and is reinforced by IPR037278 (ARFGAP/RecO-like zinc finger, residues 46–162). This triad defines a Zn2+-coordinating ArfGAP fold that accelerates GTP hydrolysis on ADP-ribosylation factor (Arf) small GTPases. Immediately downstream, the protein transitions into a modular scaffold. IPR036770 (Ankyrin repeat-containing domain superfamily, residues 82–294) and its internal repeat IPR002110 (Ankyrin repeat, residues 187–278) create elongated helical repeats that mediate high-affinity protein–protein interactions and cargo assembly. The central region contains IPR013724 (GIT, Spa2 homology domain, residues 314–404), a hallmark of GIT-family scaffolds that recruit cytoskeletal and signaling partners. The overall family assignment IPR047161 (ARF GTPase-activating protein Git-like, residues 39–589) and the distal IPR022018 (ARF GTPase-activating protein GIT1, C-terminal domain, residues 612–730) define a canonical GIT1-like architecture: an N-terminal ArfGAP catalytic module followed by ankyrin repeats, an SHD platform, and a GIT1-specific C-terminus that stabilizes assemblies and targets membranes.
This ordered layout causally establishes molecular function. The ArfGAP domain and its zinc finger architecture supply the catalytic chemistry that stimulates GTP hydrolysis on Arf small GTPases; this defines ARF GTPase activator activity (GO:0008065). The ankyrin repeats and SHD domain expand interaction capacity, positioning the catalytic core within larger trafficking and cytoskeletal assemblies. Together, these modules generate a platform that both turns over Arf-GTP and organizes effectors.
From function to process, accelerating Arf GTPase cycles directly controls vesicle budding, uncoating, and cargo sorting along endocytic and recycling routes. The ankyrin–SHD–GIT1C-terminal triad recruits actin regulators and adaptor complexes, coupling membrane traffic to cytoskeletal remodeling. This architecture therefore drives vesicle-mediated transport and endocytic pathway organization; in cellular component terms this maps to soluble pools at membranes but is best captured here as GO:0043226 cytoplasm, consistent with a cytoplasmic scaffold that transiently engages endomembranes.
The cellular context follows. Absence of transmembrane segments and the presence of ankyrin repeats and soluble scaffold domains argue for a soluble cytoplasmic localization where the protein assembles trafficking hubs; thus I infer cytoplasm (GO:0005737) as the principal compartment, matching the operational zone of Arf-regulated endocytosis and recycling endosomes in the cytoplasmic milieu.
Mechanistically, the protein likely binds and inactivates Arf via its N-terminal ArfGAP core, while the ankyrin repeats and SHD domain nucleate complexes that couple membrane trafficking to actin dynamics. I hypothesize interactions with Arf small GTPases (e.g., Arf1/Arf6), clathrin/adaptor assemblies, and GIT-associated partners such as paxillin and PIX/PAFAH1B1-like GEFs, enabling coordinated control of endocytic sorting and cytoskeletal remodeling in Drosophila cells.
A cytoplasmic scaffold that accelerates GTP hydrolysis on Arf small GTPases and organizes endocytic and recycling pathways in fruit fly cells. Its N-terminal catalytic module drives Arf inactivation, while central ankyrin repeats and a GIT platform assemble multiprotein complexes that couple membrane trafficking to actin remodeling. By positioning catalytic and scaffolding elements in a GIT-like architecture, it coordinates vesicle dynamics and cytoskeletal control from soluble cytoplasmic hubs.
May function as a GTPase-activating protein for Arf.
IPR038508, homologous_superfamily) — residues 31-166IPR001164, domain) — residues 32-168IPR047161, family) — residues 39-589IPR037278, homologous_superfamily) — residues 46-162IPR036770, homologous_superfamily) — residues 82-294IPR002110, repeat) — residues 187-278IPR013724, domain) — residues 314-404IPR022018, domain) — residues 612-730Molecular Function: molecular_function (GO:0003674), binding (GO:0005488), molecular adaptor activity (GO:0060090), protein binding (GO:0005515)
Biological Process: biological_process (GO:0008150), biological regulation (GO:0065007), localization (GO:0051179), positive regulation of biological process (GO:0048518), regulation of biological process (GO:0050789), developmental process (GO:0032502), cellular process (GO:0009987), negative regulation of biological process (GO:0048519), multicellular organismal process (GO:0032501), cellular localization (GO:0051641), regulation of developmental process (GO:0050793), positive regulation of signaling (GO:0023056), anatomical structure development (GO:0048856), multicellular organism development (GO:0007275), positive regulation of response to stimulus (GO:0048584), regulation of cellular process (GO:0050794), regulation of response to stimulus (GO:0048583), establishment of localization (GO:0051234), regulation of signaling (GO:0023051), negative regulation of multicellular organismal process (GO:0051241), regulation of multicellular organismal process (GO:0051239), negative regulation of growth (GO:0045926), negative regulation of developmental process (GO:0051093), regulation of growth (GO:0040008), macromolecule localization (GO:0033036), positive regulation of cellular process (GO:0048522), positive regulation of signal transduction (GO:0009967), muscle structure development (GO:0061061), regulation of cell communication (GO:0010646), head development (GO:0060322), system development (GO:0048731), negative regulation of organ growth (GO:0046621), transport (GO:0006810), animal organ development (GO:0048513), negative regulation of developmental growth (GO:0048640), regulation of signal transduction (GO:0009966), cellular macromolecule localization (GO:0070727), establishment of localization in cell (GO:0051649), regulation of organ growth (GO:0046620), positive regulation of cell communication (GO:0010647), mushroom body development (GO:0016319), regulation of developmental growth (GO:0048638), brain development (GO:0007420), synaptic vesicle cycle (GO:0099504), synaptic vesicle recycling (GO:0036465), nervous system development (GO:0007399), central nervous system development (GO:0007417), positive regulation of intracellular signal transduction (GO:1902533), vesicle-mediated transport (GO:0016192), protein localization (GO:0008104), somatic muscle development (GO:0007525), regulation of intracellular signal transduction (GO:1902531), protein localization to cell junction (GO:1902414), vesicle-mediated transport in synapse (GO:0099003), positive regulation of hippo signaling (GO:0035332), regulation of hippo signaling (GO:0035330), protein localization to synapse (GO:0035418)
Cellular Component: cellular_component (GO:0005575), cellular anatomical entity (GO:0110165), cell leading edge (GO:0031252), intracellular anatomical structure (GO:0005622), organelle (GO:0043226), presynaptic active zone (GO:0048786), presynapse (GO:0098793), cytoplasm (GO:0005737), cell periphery (GO:0071944), cell junction (GO:0030054), presynaptic cytoskeleton (GO:0099569), presynaptic active zone cytoplasmic component (GO:0098831), intracellular organelle (GO:0043229), synapse (GO:0045202), cell cortex (GO:0005938), cytoplasmic region (GO:0099568), non-membrane-bounded organelle (GO:0043228), cortical cytoskeleton (GO:0030863), cytoskeleton of presynaptic active zone (GO:0048788), cell cortex region (GO:0099738), intracellular non-membrane-bounded organelle (GO:0043232), cytoskeleton (GO:0005856)
Generated by BioReason
Source: git-bioreason-rl-predictions.md
The BioReason summary states:
A cytoplasmic scaffold that accelerates GTP hydrolysis on Arf small GTPases and organizes endocytic and recycling pathways in fruit fly cells. Its N-terminal catalytic module drives Arf inactivation, while central ankyrin repeats and a GIT platform assemble multiprotein complexes that couple membrane trafficking to actin remodeling. By positioning catalytic and scaffolding elements in a GIT-like architecture, it coordinates vesicle dynamics and cytoskeletal control from soluble cytoplasmic hubs.
This is a solid summary that correctly identifies the dual nature of Git: ARF-GAP catalytic activity and scaffold function. The curated review confirms Git as an "ARF GTPase-activating protein that functions as a multidomain scaffold protein, forming a conserved dPix-Git-PAK complex." The core molecular function of GTPase activator activity (GO:0005096) is well-captured.
Strengths:
- Correctly identifies the ArfGAP catalytic function
- Recognizes the scaffolding role via ankyrin repeats and SHD domain
- Accurately describes coupling of membrane trafficking to cytoskeletal control
Omissions:
Hippo pathway regulation: The curated review identifies positive regulation of Hippo signaling (GO:0035332) as a core function, with Git regulating Arf79F upstream of Hippo (PMID:38240353). This is entirely absent from BioReason's summary.
Synaptic vesicle recycling: The curated review documents Git's role at presynaptic active zones and in synaptic vesicle recycling (PMID:24882013). BioReason mentions "vesicle dynamics" generically but misses the synaptic context.
Brain development: The curated review notes severely decreased central brain size in dGit mutants (PMID:25792865). Not mentioned.
Specific complex: The dPix-Git-PAK complex and paxillin-binding domain-mediated basal targeting are key features documented in the curated review but absent from the summary.
Localization: The curated review places Git at presynaptic active zones, focal adhesion-like structures, and the cell cortex. BioReason only mentions "cytoplasm."
Comparison with interpro2go:
The ai-review.yaml contains two GO_REF:0000002 annotations: brain development (GO:0007420) and regulation of ARF protein signal transduction (GO:0032012). BioReason's summary recapitulates the ARF signal transduction aspect well, essentially matching the interpro2go reasoning. However, it misses the brain development annotation entirely. BioReason adds value by describing the scaffolding function and vesicle trafficking context beyond what interpro2go provides, but does not reach the specific biological contexts (Hippo, synapses, brain development) documented in the curated review.
The trace provides accurate domain-by-domain analysis. The identification of the ArfGAP-ankyrin-SHD-GIT1C architecture is correct. The hypothesized interactions with "clathrin/adaptor assemblies" and "PIX/PAFAH1B1-like GEFs" show awareness of GIT-family biology, though dPix is not named specifically.
---
id: Q95RG8
gene_symbol: Git
aliases: [dGIT, arfgap2, CG16728]
product_type: PROTEIN
status: COMPLETE
taxon:
id: NCBITaxon:7227
label: Drosophila melanogaster
description: ARF GTPase-activating protein that functions as a multidomain scaffold
protein, forming a conserved dPix-Git-PAK complex at focal adhesion-like sites.
Git stimulates GTP hydrolysis on ARF family GTPases (particularly Arf79F, the fly
ARF1 ortholog), acts as a molecular adaptor targeting the complex basally via its
paxillin-binding domain, and regulates actomyosin dynamics, synaptic vesicle recycling,
and Hippo pathway signaling.
existing_annotations:
- term:
id: GO:0045202
label: synapse
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: Git localizes to presynaptic active zones and is involved in synaptic
vesicle recycling. IBA annotation is phylogenetically sound and supported
by direct evidence in Drosophila from PMID:24882013.
action: ACCEPT
reason: The IBA annotation reflects conserved synaptic localization across the
GIT family. Direct Drosophila evidence shows dGIT at presynaptic active zones
(IDA from PMID:24882013) and involvement in synaptic vesicle recycling (IMP
from PMID:24882013). The synapse annotation appropriately captures this localization.
supported_by:
- reference_id: PMID:24882013
supporting_text: GIT1 and its D. melanogaster ortholog, dGIT, are shown
to directly associate with the endocytic adaptor stonin 2/stoned B. In
Drosophila dgit mutants, stoned B and synaptotagmin levels are reduced
and stoned B is partially mislocalized.
- reference_id: file:DROME/git/git-deep-research-falcon.md
supporting_text: 'model: Edison Scientific Literature'
- term:
id: GO:0007420
label: brain development
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: Git is required for brain development in Drosophila, with mutants showing
decreased central brain size and abnormal mushroom body morphology. IBA annotation
is well-supported by direct experimental evidence in fly.
action: ACCEPT
reason: The IBA annotation is strongly supported by direct Drosophila evidence
(IMP from PMID:25792865). dGit mutants show severely decreased central brain
size and defects in mushroom body development.
supported_by:
- reference_id: PMID:25792865
supporting_text: dGitex21C Drosophila mutants also exhibited severely decreased
central brain size
- term:
id: GO:0005096
label: GTPase activator activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: Git contains a well-characterized ARF-GAP domain and functions as a
GTPase activating protein for ARF family members. This is a core molecular
function supported by domain architecture and genetic/interaction data.
action: ACCEPT
reason: GTPase activator activity is the primary enzymatic function of Git.
The protein contains an ArfGAP domain (aa 32-168) with a C4-type zinc finger,
and genetic evidence places Git upstream of Arf79F in Hippo signaling (PMID:38240353).
This represents a core function.
supported_by:
- reference_id: PMID:18996366
supporting_text: GIT1-like proteins are GTPase-activating proteins (GAPs)
for Arfs and interact with a variety of signaling molecules to function
as integrators of pathways controlling cytoskeletal organization and cell
motility.
- term:
id: GO:0008277
label: regulation of G protein-coupled receptor signaling pathway
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: While Git was originally named for "G protein-coupled receptor kinase
interacting protein", evidence for direct GPCR signaling regulation in Drosophila
is limited. The IBA annotation likely derives from mammalian orthologs where
this connection is better established.
action: KEEP_AS_NON_CORE
reason: The GIT family was initially identified through interaction with G-protein
coupled receptor kinases in mammals, but direct evidence for this role in
Drosophila Git is lacking. The primary functions of dGit appear to be in adhesion-cytoskeletal
signaling, synaptic function, and Hippo pathway regulation. Keep as non-core
pending additional Drosophila-specific evidence.
supported_by:
- reference_id: PMID:18996366
supporting_text: GIT1-like proteins are GTPase-activating proteins (GAPs)
for Arfs and interact with a variety of signaling molecules to function
as integrators of pathways controlling cytoskeletal organization and cell
motility.
- term:
id: GO:0031267
label: small GTPase binding
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: Git binds to small GTPases including Arf79F (ARF1 ortholog) to regulate
their activity. This is consistent with Git's ARF-GAP function.
action: ACCEPT
reason: As an ARF-GAP, Git necessarily binds to ARF family small GTPases as
substrates. Proximity ligation assays in PMID:38240353 demonstrate Git-Arf79F
interaction in larval tissues. This binding is essential for Git's GAP activity.
supported_by:
- reference_id: PMID:38240353
supporting_text: Git, which also bind to the Hippo protein (Hpo) and are
involved in the activation of the Hippo pathway. Additionally, we show
that the ADP ribosylation factor Arf79F (Arf1), which is a Hpo interactor
- term:
id: GO:0032012
label: regulation of ARF protein signal transduction
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: Git regulates ARF protein signaling through its GAP activity on Arf79F.
This is a core function supported by genetic and physical interaction data.
action: ACCEPT
reason: Git functions as an ARF-GAP that restrains Arf79F activity. Genetic
evidence from PMID:38240353 shows that Arf79F knockdown rescues Hippo pathway
defects in lgl mutants, placing Git in a pathway that negatively regulates
Arf79F to activate Hippo signaling.
supported_by:
- reference_id: PMID:38240353
supporting_text: 'Lgl acts via Vap33 to activate the Hippo pathway by a
dual mechanism: (1) through interaction with RtGEF, Git and Arf79F'
- term:
id: GO:0036465
label: synaptic vesicle recycling
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: Git is required for proper synaptic vesicle recycling at the neuromuscular
junction. IBA annotation is directly supported by experimental evidence in
Drosophila.
action: ACCEPT
reason: The IBA annotation is well-supported by IMP evidence from PMID:24882013
showing that dgit mutants have morphological and functional defects in synaptic
vesicle recycling.
supported_by:
- reference_id: PMID:24882013
supporting_text: Moreover, dgit mutants show morphological and functional
defects in SV recycling. These data establish a presynaptic role for GIT
in SV recycling and suggest a connection between the AZ cytomatrix and
the endocytic machinery.
- term:
id: GO:0000922
label: spindle pole
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: Spindle pole localization is inferred from mammalian ortholog data
in UniProt. Direct evidence for spindle pole localization of dGit in Drosophila
is not available.
action: UNDECIDED
reason: This IEA annotation is based on mammalian ortholog localization data.
While GIT family proteins may localize to spindle poles in some contexts,
direct Drosophila evidence is lacking. The primary characterized localizations
for dGit are cytoplasm, cell leading edge, focal adhesion-like structures,
and presynaptic active zones.
- term:
id: GO:0005096
label: GTPase activator activity
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: IEA annotation based on InterPro domain (ArfGAP) correctly captures
Git's enzymatic function. Duplicates the IBA annotation but with different
evidence.
action: ACCEPT
reason: Git contains a well-defined ArfGAP domain (IPR001164) with the characteristic
zinc finger. The IEA annotation from domain mapping is correct and complements
the IBA annotation.
supported_by:
- reference_id: PMID:12618308
supporting_text: I surveyed Drosophila and human sequence databases for
genes predicting proteins related to GAPs for Ras superfamily members
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: Cytoplasmic localization is supported by direct IDA evidence in Drosophila
(PMID:18996366). The IEA annotation is consistent with experimental data.
action: ACCEPT
reason: The IEA annotation is consistent with direct experimental evidence from
PMID:18996366 showing cytoplasmic localization of dGit protein in embryonic
muscle syncytia.
supported_by:
- reference_id: PMID:18996366
supporting_text: The dGIT protein is concentrated at the termini of growing
myotubes and localizes to muscle attachment sites in late stage embryos.
- term:
id: GO:0005813
label: centrosome
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: Centrosome localization is inferred from mammalian ortholog data. Direct
Drosophila evidence for centrosome localization is not available.
action: UNDECIDED
reason: This IEA annotation is based on mammalian ortholog data. Direct evidence
for centrosome localization of dGit in Drosophila has not been reported. The
characterized Drosophila localizations are cytoplasm, leading edge, focal
adhesions, and presynaptic zones.
- term:
id: GO:0005925
label: focal adhesion
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: Git localizes to focal adhesion-like structures in Drosophila epithelia
via its paxillin-binding domain. IEA annotation is well-supported by Drosophila
studies.
action: ACCEPT
reason: Although annotated via IEA, focal adhesion localization is strongly
supported by primary Drosophila literature. Git's C-terminal paxillin-binding
domain mediates targeting to basal focal adhesion-like structures in follicular
epithelium.
supported_by:
- reference_id: PMID:18996366
supporting_text: The dGIT protein is concentrated at the termini of growing
myotubes and localizes to muscle attachment sites in late stage embryos.
- term:
id: GO:0007420
label: brain development
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: IEA annotation from InterPro mapping. Brain development role is well-established
by direct experimental evidence in Drosophila.
action: ACCEPT
reason: The IEA annotation correctly captures Git's role in brain development,
which is directly demonstrated in Drosophila by IMP evidence (PMID:25792865)
showing reduced brain size and mushroom body defects in dGit mutants.
supported_by:
- reference_id: PMID:25792865
supporting_text: dGitex21C Drosophila mutants also exhibited severely decreased
central brain size
- term:
id: GO:0008270
label: zinc ion binding
evidence_type: IEA
original_reference_id: GO_REF:0000043
review:
summary: Git contains a C4-type zinc finger (aa 49-72) within its ArfGAP domain
that coordinates zinc ions. This is structurally well-supported.
action: ACCEPT
reason: The zinc ion binding annotation correctly reflects the presence of a
C4-type zinc finger within the ArfGAP domain. This zinc finger is essential
for the structural integrity and function of the GAP domain.
- term:
id: GO:0030027
label: lamellipodium
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: Lamellipodium localization is inferred from mammalian ortholog data.
In Drosophila, Git localizes to leading edges of cells, which includes lamellipodia-like
structures.
action: ACCEPT
reason: While annotated via IEA, the localization is consistent with direct
Drosophila evidence showing Git at "the leading edge of growing myotubes"
(PMID:18996366). Cell leading edge structures include lamellipodia.
supported_by:
- reference_id: PMID:18996366
supporting_text: The dGIT protein is concentrated at the termini of growing
myotubes and localizes to muscle attachment sites in late stage embryos
- term:
id: GO:0032012
label: regulation of ARF protein signal transduction
evidence_type: IEA
original_reference_id: GO_REF:0000002
review:
summary: IEA annotation from InterPro correctly captures Git's role in ARF signaling
regulation. Git regulates Arf79F in the Hippo pathway.
action: ACCEPT
reason: The IEA annotation is correct and consistent with the IBA annotation
and experimental data showing Git's function in regulating ARF signaling,
particularly Arf79F in the context of Hippo pathway activation.
supported_by:
- reference_id: PMID:38240353
supporting_text: 'Lgl acts via Vap33 to activate the Hippo pathway by a
dual mechanism: (1) through interaction with RtGEF, Git and Arf79F'
- term:
id: GO:0045202
label: synapse
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: IEA annotation for synapse localization is consistent with direct experimental
evidence showing Git at presynaptic active zones in Drosophila.
action: ACCEPT
reason: The IEA annotation is well-supported by IDA evidence from PMID:24882013
showing dGit at the presynaptic active zone. Git functions in synaptic vesicle
recycling at the synapse.
supported_by:
- reference_id: PMID:24882013
supporting_text: Here, we identify the scaffold G protein coupled receptor
kinase 2 interacting (GIT) protein as a component of the AZ-associated
cytomatrix
- term:
id: GO:0046872
label: metal ion binding
evidence_type: IEA
original_reference_id: GO_REF:0000043
review:
summary: Metal ion binding is a parent term of zinc ion binding. Git binds zinc
through its C4-type zinc finger.
action: ACCEPT
reason: This is a correct parent annotation to zinc ion binding. Git's ArfGAP
domain contains a zinc-coordinating C4-type zinc finger motif.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:14605208
review:
summary: High-throughput two-hybrid screen identified Git interactions with
RtGEF (dPix). While protein binding is uninformative, the interaction with
RtGEF is functionally significant for Git's scaffold function.
action: MODIFY
reason: The protein binding (GO:0005515) term is uninformative. Git functions
as a molecular adaptor that specifically binds dPix/RtGEF and PAK. The more
informative annotation GO:0060090 (molecular adaptor activity) is already
captured with IMP evidence from PMID:25484297.
proposed_replacement_terms:
- id: GO:0060090
label: molecular adaptor activity
supported_by:
- reference_id: PMID:14605208
supporting_text: A two-hybrid-based protein-interaction map of the fly proteome...The
network recapitulated known pathways, extended pathways, and uncovered
previously unknown pathway components.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:38944040
review:
summary: Next-generation protein interactome study confirming Git-RtGEF interaction.
While the specific interaction is meaningful, protein binding is uninformative.
action: MODIFY
reason: The protein binding annotation is too general to be informative. Git's
key function is as a scaffold/adaptor protein that brings together specific
partners (dPix, PAK, Hpo, Arf79F). The interaction with RtGEF supports Git's
molecular adaptor function.
proposed_replacement_terms:
- id: GO:0060090
label: molecular adaptor activity
supported_by:
- reference_id: PMID:38944040
supporting_text: Epub 2024 Jun 28. Next-generation Drosophila protein interactome
map and its functional implications.
- term:
id: GO:0035332
label: positive regulation of hippo signaling
evidence_type: IGI
original_reference_id: PMID:38240353
review:
summary: Git is part of the Vap33-RtGEF-Git-Arf79F module that activates Hippo
signaling. Genetic interaction data shows Git knockdown rescues Hippo pathway
defects in V-ATPase mutants.
action: ACCEPT
reason: Well-supported by genetic evidence from PMID:38240353. Vap33 physically
interacts with RtGEF and Git, which bind to Hpo. Git knockdown rescues reduced
Diap1 expression in Vha68-2 mutant clones, demonstrating Git's role in Hippo
pathway activation.
supported_by:
- reference_id: PMID:38240353
supporting_text: Git knockdown rescues the reduced Hippo pathway target
gene expression in Vha68-2 mutant clones
- term:
id: GO:0007420
label: brain development
evidence_type: IMP
original_reference_id: PMID:25792865
review:
summary: dGit mutants show decreased central brain size and abnormal mushroom
body development, directly demonstrating Git's role in brain development.
action: ACCEPT
reason: Direct experimental evidence from mutant analysis. dGitex21C mutants
show severely decreased central brain size and defects in mushroom body alpha
and beta lobe development.
supported_by:
- reference_id: PMID:25792865
supporting_text: Consistent with Git1-/- mice, dGitex21C Drosophila mutants
also exhibited severely decreased central brain size
- term:
id: GO:0046621
label: negative regulation of organ growth
evidence_type: IGI
original_reference_id: PMID:25484297
review:
summary: Git and Pix control tissue growth via the Hippo pathway. Git promotes
Hpo activation, which restricts tissue growth. This is a core function linking
Git to growth control.
action: ACCEPT
reason: Strong genetic evidence from PMID:25484297. Git and Pix form an oligomeric
scaffold that promotes Hpo dimerization and autophosphorylation, thereby activating
Hippo signaling and restricting organ growth.
supported_by:
- reference_id: PMID:25484297
supporting_text: We show that Pix and Git regulate Hippo-pathway-dependent
tissue growth in D. melanogaster and that they do this in parallel to
the known upstream regulator Fat cadherin.
- term:
id: GO:0035332
label: positive regulation of hippo signaling
evidence_type: IGI
original_reference_id: PMID:25484297
review:
summary: Git and Pix promote Hpo kinase activation by facilitating Hpo dimerization
and autophosphorylation. This is a core signaling function.
action: ACCEPT
reason: Well-characterized mechanism from PMID:25484297. Pix and Git act as
scaffold proteins to promote Hpo dimerization and autophosphorylation of its
activation loop, thereby activating the Hippo pathway.
supported_by:
- reference_id: PMID:25484297
supporting_text: Pix and Git influence activity of the Hpo kinase by acting
as a scaffold complex, rather than enzymes, and promote Hpo dimerization
and autophosphorylation of Hpo's activation loop.
- term:
id: GO:0060090
label: molecular adaptor activity
evidence_type: IMP
original_reference_id: PMID:25484297
review:
summary: Git functions as a molecular adaptor/scaffold that brings together
dPix, PAK, and Hpo to facilitate signaling. This is a core molecular function.
action: ACCEPT
reason: Well-supported core function. Git acts as a scaffold rather than an
enzyme in promoting Hippo pathway activation. Git's adaptor function is also
demonstrated in its role bringing together dPix and PAK at adhesion sites.
supported_by:
- reference_id: PMID:25484297
supporting_text: Pix and Git influence activity of the Hpo kinase by acting
as a scaffold complex, rather than enzymes
- term:
id: GO:1905383
label: protein localization to presynapse
evidence_type: IMP
original_reference_id: PMID:24882013
review:
summary: Git is required for proper localization of synaptic proteins (stoned
B, synaptotagmin) to the presynapse. dgit mutants show reduced and mislocalized
stoned B.
action: ACCEPT
reason: Direct evidence from PMID:24882013. In dgit mutants, stoned B levels
are reduced and the protein is partially mislocalized from the presynaptic
compartment.
supported_by:
- reference_id: PMID:24882013
supporting_text: In Drosophila dgit mutants, stoned B and synaptotagmin
levels are reduced and stoned B is partially mislocalized.
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:24882013
review:
summary: Git interacts with stonin 2/stoned B at the presynapse. While the specific
interaction is meaningful for synaptic function, protein binding is uninformative.
action: MODIFY
reason: The protein binding term is too general. The functionally relevant annotation
is the specific interaction with stoned B that facilitates synaptic vesicle
endocytosis. This interaction supports Git's role as a presynaptic scaffold.
proposed_replacement_terms:
- id: GO:0060090
label: molecular adaptor activity
supported_by:
- reference_id: PMID:24882013
supporting_text: GIT1 and its D. melanogaster ortholog, dGIT, are shown
to directly associate with the endocytic adaptor stonin 2/stoned B.
- term:
id: GO:0048786
label: presynaptic active zone
evidence_type: IDA
original_reference_id: PMID:24882013
review:
summary: Direct localization evidence showing Git at the presynaptic active
zone cytomatrix. This is a well-supported subcellular localization.
action: ACCEPT
reason: Direct assay evidence from PMID:24882013 demonstrating Git localization
to the active zone-associated cytomatrix.
supported_by:
- reference_id: PMID:24882013
supporting_text: Here, we identify the scaffold G protein coupled receptor
kinase 2 interacting (GIT) protein as a component of the AZ-associated
cytomatrix
- term:
id: GO:0048788
label: cytoskeleton of presynaptic active zone
evidence_type: IDA
original_reference_id: PMID:24882013
review:
summary: Git colocalizes with the cytoskeletal components of the presynaptic
active zone. The annotation uses "colocalizes_with" qualifier, appropriately
reflecting the colocalization rather than integral association.
action: ACCEPT
reason: Direct evidence from PMID:24882013 showing Git association with the
presynaptic cytomatrix. Git's scaffold function at the active zone involves
the cytoskeletal framework.
supported_by:
- reference_id: PMID:24882013
supporting_text: Here, we identify the scaffold G protein coupled receptor
kinase 2 interacting (GIT) protein as a component of the AZ-associated
cytomatrix
- term:
id: GO:0099504
label: synaptic vesicle cycle
evidence_type: IMP
original_reference_id: PMID:24882013
review:
summary: Git is required for normal synaptic vesicle cycling. dgit mutants show
defects in both exo- and endocytic aspects of the vesicle cycle.
action: ACCEPT
reason: Direct evidence from mutant analysis in PMID:24882013 showing morphological
and functional defects in synaptic vesicle cycling in dgit mutants.
supported_by:
- reference_id: PMID:24882013
supporting_text: dgit mutants show morphological and functional defects
in SV recycling. These data establish a presynaptic role for GIT in SV
recycling
- term:
id: GO:0036465
label: synaptic vesicle recycling
evidence_type: IMP
original_reference_id: PMID:24882013
review:
summary: Git is specifically required for synaptic vesicle recycling, the endocytic
retrieval phase of the vesicle cycle. This is a core synaptic function.
action: ACCEPT
reason: Direct evidence from PMID:24882013. Git associates with the endocytic
adaptor stoned B and is required for proper SV recycling. This is a core presynaptic
function.
supported_by:
- reference_id: PMID:24882013
supporting_text: dgit mutants show morphological and functional defects
in SV recycling. These data establish a presynaptic role for GIT in SV
recycling and suggest a connection between the AZ cytomatrix and the endocytic
machinery.
- term:
id: GO:0016319
label: mushroom body development
evidence_type: IMP
original_reference_id: PMID:25792865
review:
summary: dGit mutants show defects in mushroom body development, with abnormal
alpha and beta lobe morphology. This is a well-supported developmental function.
action: ACCEPT
reason: Direct mutant analysis in PMID:25792865 shows dGitex21C mutants have
abnormal mushroom body development, with the most common defect being early
termination of one alpha-lobe (58%).
supported_by:
- reference_id: PMID:25792865
supporting_text: was significantly affected by the deletion of dGit. (Fig.
4C). However, the penetrance of this impaired mushroom body development
was incomplete
- term:
id: GO:0005096
label: GTPase activator activity
evidence_type: ISM
original_reference_id: PMID:12618308
review:
summary: ISM annotation based on computational survey of GAP domains. Git is
correctly identified as an ARF-GAP based on sequence analysis.
action: ACCEPT
reason: The computational survey in PMID:12618308 correctly identified Git (CG16728)
as encoding an ARF-GAP based on domain analysis. This is consistent with the
experimentally validated function.
supported_by:
- reference_id: PMID:12618308
supporting_text: To facilitate genetic analysis, I surveyed Drosophila and
human sequence databases for genes predicting proteins related to GAPs
for Ras superfamily members
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IDA
original_reference_id: PMID:18996366
review:
summary: Direct localization evidence showing Git in the cytoplasm of embryonic
muscle cells. This is a core localization.
action: ACCEPT
reason: Direct assay evidence from PMID:18996366 showing dGit protein in the
cytoplasm of embryonic muscle syncytia.
supported_by:
- reference_id: PMID:18996366
supporting_text: The dGIT protein is concentrated at the termini of growing
myotubes and localizes to muscle attachment sites in late stage embryos
- term:
id: GO:0007525
label: somatic muscle development
evidence_type: IMP
original_reference_id: PMID:18996366
review:
summary: dGit is required for proper muscle morphogenesis and myotube guidance
during embryogenesis. dgit mutants show muscle patterning defects.
action: ACCEPT
reason: Core developmental function supported by mutant analysis in PMID:18996366.
dgit mutant embryos show muscle patterning defects including aberrant targeting
in subsets of muscles, particularly ventral oblique muscles VO5 and VO6.
supported_by:
- reference_id: PMID:18996366
supporting_text: dgit mutant embryos show muscle patterning defects and
aberrant targeting in subsets of their muscles
- term:
id: GO:0031252
label: cell leading edge
evidence_type: IDA
original_reference_id: PMID:18996366
review:
summary: Git localizes to the leading edge of growing myotubes during muscle
development. This is a core localization related to Git's role in cell motility
and morphogenesis.
action: ACCEPT
reason: Direct localization evidence from PMID:18996366 showing Git enrichment
at the leading edge of growing myotubes, particularly at the base of membrane
protrusions.
supported_by:
- reference_id: PMID:18996366
supporting_text: The dGIT protein is concentrated at the termini of growing
myotubes
- term:
id: GO:0035591
label: signaling adaptor activity
evidence_type: NAS
review:
summary: Added to align core_functions with existing annotations.
action: NEW
reason: Core function term not present in existing_annotations.
- term:
id: GO:0110020
label: regulation of actomyosin structure organization
evidence_type: NAS
review:
summary: Added to align core_functions with existing annotations.
action: NEW
reason: Core function term not present in existing_annotations.
- term:
id: TEMP:dPix-Git-PAK_complex
label: dPix-Git-PAK complex
evidence_type: NAS
review:
summary: Added to align core_functions with existing annotations.
action: NEW
reason: Core function complex term not present in existing_annotations.
references:
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with GO
terms
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000043
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot keyword mapping
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location
vocabulary mapping, accompanied by conservative changes to GO terms applied
by UniProt
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:12618308
title: GAPs galore! A survey of putative Ras superfamily GTPase activating proteins
in man and Drosophila.
findings:
- statement: Git (CG16728) is computationally identified as encoding an ARF-GAP
based on conserved domain analysis in a systematic survey of Drosophila
and human GAP genes.
supporting_text: To facilitate genetic analysis, I surveyed Drosophila and
human sequence databases for genes predicting proteins related to GAPs for
Ras superfamily members. Remarkably, close to 0.5% of genes in both species
(173 human and 64 Drosophila genes) predict proteins related to GAPs for
Arf, Rab, Ran, Rap, Ras, Rho, and Sar family GTPases.
reference_section_type: ABSTRACT
full_text_unavailable: true
- id: PMID:14605208
title: A protein interaction map of Drosophila melanogaster.
findings:
- statement: Git interacts with RtGEF (dPix) in a high-throughput two-hybrid
screen of the Drosophila proteome, supporting the conserved Pix-Git protein
complex.
supporting_text: A two-hybrid-based protein-interaction map of the fly proteome.
A total of 10,623 predicted transcripts were isolated and screened against
standard and normalized complementary DNA libraries to produce a draft map
of 7048 proteins and 20,405 interactions... The network recapitulated known
pathways, extended pathways, and uncovered previously unknown pathway components.
reference_section_type: ABSTRACT
full_text_unavailable: true
- id: PMID:18996366
title: The Drosophila homologue of Arf-GAP GIT1, dGIT, is required for proper
muscle morphogenesis and guidance during embryogenesis.
findings:
- statement: dGIT is a GTPase-activating protein for ARF family members that
integrates signaling pathways controlling cytoskeletal organization and
cell motility.
supporting_text: GIT1-like proteins are GTPase-activating proteins (GAPs)
for Arfs and interact with a variety of signaling molecules to function
as integrators of pathways controlling cytoskeletal organization and cell
motility.
reference_section_type: ABSTRACT
full_text_unavailable: true
- statement: dGIT is required for proper muscle morphogenesis and myotube guidance
during embryogenesis.
supporting_text: we describe the characterization of a Drosophila homologue
of GIT1, dGIT, and show that it is required for proper muscle morphogenesis
and myotube guidance in the fly embryo.
reference_section_type: ABSTRACT
full_text_unavailable: true
- statement: dGIT protein localizes to the leading edge of growing myotubes
and to muscle attachment sites.
supporting_text: The dGIT protein is concentrated at the termini of growing
myotubes and localizes to muscle attachment sites in late stage embryos.
reference_section_type: ABSTRACT
full_text_unavailable: true
- statement: dgit mutant embryos show muscle patterning defects and aberrant
targeting in subsets of muscles.
supporting_text: dgit mutant embryos show muscle patterning defects and aberrant
targeting in subsets of their muscles.
reference_section_type: ABSTRACT
full_text_unavailable: true
- statement: dGIT is required for proper localization of dPak to myotube termini
and forms a complex with dPak in the presence of dPIX.
supporting_text: dgit mutant muscles fail to localize the p21-activated kinase,
dPak, to their termini. dPak and dGIT form a complex in the presence of
dPIX and dpak mutant embryos show similar muscle morphogenesis and targeting
phenotypes to that of dgit.
reference_section_type: ABSTRACT
full_text_unavailable: true
- id: PMID:24882013
title: A presynaptic role for the cytomatrix protein GIT in synaptic vesicle recycling.
findings:
- statement: GIT is a component of the active zone (AZ)-associated cytomatrix
at presynaptic terminals.
supporting_text: Here, we identify the scaffold G protein coupled receptor
kinase 2 interacting (GIT) protein as a component of the AZ-associated cytomatrix
and as a regulator of SV endocytosis.
reference_section_type: ABSTRACT
full_text_unavailable: true
- statement: GIT directly associates with the endocytic adaptor stonin 2/stoned
B, linking the active zone cytomatrix to endocytic machinery.
supporting_text: GIT1 and its D. melanogaster ortholog, dGIT, are shown to
directly associate with the endocytic adaptor stonin 2/stoned B.
reference_section_type: ABSTRACT
full_text_unavailable: true
- statement: In dgit mutants, stoned B and synaptotagmin levels are reduced
and stoned B is partially mislocalized from the presynapse.
supporting_text: In Drosophila dgit mutants, stoned B and synaptotagmin levels
are reduced and stoned B is partially mislocalized.
reference_section_type: ABSTRACT
full_text_unavailable: true
- statement: dgit mutants show morphological and functional defects in synaptic
vesicle recycling.
supporting_text: Moreover, dgit mutants show morphological and functional
defects in SV recycling. These data establish a presynaptic role for GIT
in SV recycling and suggest a connection between the AZ cytomatrix and the
endocytic machinery.
reference_section_type: ABSTRACT
full_text_unavailable: true
- id: PMID:25484297
title: The GTPase regulatory proteins Pix and Git control tissue growth via the
Hippo pathway.
findings:
- statement: Pix and Git were identified as prominent Hippo (Hpo) kinase interactors
through proteomics.
supporting_text: we used proteomics to identify proteins that bind to the
Hippo (Hpo) kinase. Prominent among these were PAK-interacting exchange
factor (known as Pix or RtGEF) and G-protein-coupled receptor kinase-interacting
protein (Git).
reference_section_type: ABSTRACT
full_text_unavailable: true
- statement: Git is the single Drosophila melanogaster homolog of mammalian
GIT1 and GIT2 proteins.
supporting_text: Git is the single Drosophila melanogaster homolog of the
mammalian GIT1 and GIT2 proteins, which were originally identified in the
search for molecules that interact with G-protein-coupled receptor kinases.
reference_section_type: ABSTRACT
full_text_unavailable: true
- statement: Pix and Git form an oligomeric scaffold to facilitate sterile 20-like
kinase activation.
supporting_text: Pix and Git form an oligomeric scaffold to facilitate sterile
20-like kinase activation and have also been linked to GTPase regulation.
reference_section_type: ABSTRACT
full_text_unavailable: true
- statement: Pix and Git regulate Hippo-pathway-dependent tissue growth in parallel
to the known upstream regulator Fat cadherin.
supporting_text: We show that Pix and Git regulate Hippo-pathway-dependent
tissue growth in D. melanogaster and that they do this in parallel to the
known upstream regulator Fat cadherin.
reference_section_type: ABSTRACT
full_text_unavailable: true
- statement: Pix and Git act as a scaffold complex (not enzymes) to promote
Hpo dimerization and autophosphorylation of Hpo's activation loop.
supporting_text: Pix and Git influence activity of the Hpo kinase by acting
as a scaffold complex, rather than enzymes, and promote Hpo dimerization
and autophosphorylation of Hpo's activation loop.
reference_section_type: ABSTRACT
full_text_unavailable: true
- id: PMID:25792865
title: A Critical Role of GIT1 in Vertebrate and Invertebrate Brain Development.
findings:
- statement: dGit shows remarkable conservation with mammalian Git1 both structurally
and functionally, forming a signaling complex with dPix and dPak.
supporting_text: dGit, a Drosophila ortholog of Git1, shows remarkable conservation
with mammalian Git1 both structurally and functionally. dGit forms signaling
complex with dPix and dPak, and the dGit-dPix-dPak signaling pathway plays
an essential role for the development in Drosophila.
reference_section_type: INTRODUCTION
full_text_unavailable: false
- statement: Adult dGit mutants exhibit severely decreased central brain size,
consistent with mammalian Git1 knockout phenotypes.
supporting_text: Consistent with Git1-/- mice, dGitex21C Drosophila mutants
also exhibited severely decreased central brain size
reference_section_type: RESULTS
full_text_unavailable: false
- statement: dGit deletion significantly affects mushroom body development,
with the most common defect being early termination of one alpha-lobe (58%).
supporting_text: Moreover, the development of alpha- or/and beta-lobe of the
mushroom body, which is known to be important for learning and memory in
Drosophila [30], was significantly affected by the deletion of dGit
reference_section_type: RESULTS
full_text_unavailable: false
- statement: dGit regulates the subcellular localization and activation of the
dPix-Rac-dPak signaling complex, and its dysregulation causes brain size
reduction and abnormal mushroom body development.
supporting_text: subcellular localization and activation of the dPix-Rac-dPak
signaling complex is modulated by dGit, and dysregultion of this signaling
complex causes severe defects, leading to brain size reduction and abnormal
mushroom body development.
reference_section_type: DISCUSSION
full_text_unavailable: false
- statement: GIT1 plays a conserved and critical role in brain development across
invertebrates and vertebrates.
supporting_text: severe developmental deficits shown in Git1-/- mice as well
as adult dGit1ex21C Drosophila mutants indicate the conserved and critical
role of GIT1 in brain development.
reference_section_type: DISCUSSION
full_text_unavailable: false
- id: PMID:38240353
title: The Drosophila tumour suppressor Lgl and Vap33 activate the Hippo pathway
through a dual mechanism.
findings:
- statement: Vap33 physically and genetically interacts with Git, which binds
to Hpo and is involved in Hippo pathway activation.
supporting_text: Vap33 physically and genetically interacts with the actin
cytoskeletal regulators RtGEF (Pix) and Git, which also bind to the Hippo
protein (Hpo) and are involved in the activation of the Hippo pathway.
reference_section_type: ABSTRACT
full_text_unavailable: false
- statement: Lgl activates the Hippo pathway via Vap33 through a mechanism involving
RtGEF, Git, and Arf79F.
supporting_text: 'Altogether, our data suggest that Lgl acts via Vap33 to
activate the Hippo pathway by a dual mechanism: (1) through interaction
with RtGEF, Git and Arf79F, and (2) through interaction and inhibition of
the V-ATPase, thereby controlling epithelial tissue growth.'
reference_section_type: ABSTRACT
full_text_unavailable: false
- statement: Git knockdown rescues reduced Hippo pathway target gene expression
in Vha68-2 mutant clones, demonstrating Git's role in Hippo pathway regulation.
supporting_text: Git knockdown rescues the reduced Hippo pathway target gene
expression in Vha68-2 mutant clones
reference_section_type: RESULTS
full_text_unavailable: false
- statement: Vap33, Lgl, RtGEF, Git, Arf79F, and Hpo form a protein interaction
network that regulates the Hippo pathway.
supporting_text: Vap33 and Lgl form a protein interaction network with RtGEF,
Git, Arf79F and Hpo
reference_section_type: RESULTS
full_text_unavailable: false
- id: PMID:38944040
title: Next-generation Drosophila protein interactome map and its functional implications.
findings:
- statement: Git interactions were identified in the next-generation Drosophila
protein interactome map (DPIM2) using affinity purification-mass spectrometry,
confirming its role in protein complexes.
supporting_text: We describe a next-generation Drosophila protein interaction
map-"DPIM2"-established from affinity purification-mass spectrometry of
5,805 baits, covering the largest fraction of the Drosophila proteome
reference_section_type: ABSTRACT
full_text_unavailable: true
- id: file:DROME/git/git-deep-research-falcon.md
title: Deep research report on Git
findings: []
core_functions:
- description: Git stimulates GTP hydrolysis on Arf79F (ARF1 ortholog), inactivating
ARF signaling to promote Hippo pathway activation and regulate membrane trafficking.
molecular_function:
id: GO:0005096
label: GTPase activator activity
directly_involved_in:
- id: GO:0032012
label: regulation of ARF protein signal transduction
- id: GO:0035332
label: positive regulation of hippo signaling
locations:
- id: GO:0005737
label: cytoplasm
- id: GO:0005925
label: focal adhesion
substrates:
- id: UniProtKB:P32387
label: Arf79F (Drosophila ARF1)
- description: Git acts as a signaling adaptor at focal adhesion-like structures,
scaffolding the dPix-Git-PAK complex via its paxillin-binding domain to limit
myosin II activation and maintain epithelial organization during morphogenesis.
supported_by:
- reference_id: PMID:25484297
supporting_text: Pix and Git influence activity of the Hpo kinase by acting
as a scaffold complex, rather than enzymes
- reference_id: file:DROME/git/git-deep-research-falcon.md
supporting_text: dPix-Git localizes to basal, focal-adhesion-like structures
and leading edges; Git's paxillin-binding domain mediates targeting; the
complex limits myosin II activity and ensures monolayer integrity
molecular_function:
id: GO:0035591
label: signaling adaptor activity
directly_involved_in:
- id: GO:0110020
label: regulation of actomyosin structure organization
- id: GO:0007525
label: somatic muscle development
locations:
- id: GO:0005925
label: focal adhesion
- id: GO:0031252
label: cell leading edge
- description: Git scaffolds Hpo dimerization and autophosphorylation as part of
the Lgl-Vap33-RtGEF-Git-Arf79F module, activating Hippo signaling to restrict
organ growth.
molecular_function:
id: GO:0060090
label: molecular adaptor activity
directly_involved_in:
- id: GO:0035332
label: positive regulation of hippo signaling
- id: GO:0046621
label: negative regulation of organ growth
locations:
- id: GO:0005737
label: cytoplasm
- description: Git localizes to the presynaptic active zone cytomatrix and associates
with stoned B to facilitate synaptic vesicle recycling at the neuromuscular
junction.
molecular_function:
id: GO:0060090
label: molecular adaptor activity
directly_involved_in:
- id: GO:0036465
label: synaptic vesicle recycling
- id: GO:1905383
label: protein localization to presynapse
locations:
- id: GO:0048786
label: presynaptic active zone
- id: GO:0048788
label: cytoskeleton of presynaptic active zone