MbiA (also known as htgA/htpY) is a small (161 aa) uncharacterized orphan protein in E. coli K12 that arose by overprinting (de novo gene birth) within the antisense strand of the yaaW gene. It was originally proposed to be a heat shock gene regulated by sigma-32, but this was later refuted by genome-wide regulon analysis (PMID:16818608). The protein has no recognizable InterPro domains or known molecular function. The gene name mbiA (modifier of biofilm) derives from its Salmonella orthologue, and strand-specific mutagenesis shows differential biofilm phenotypes (PMID:24111745), though the overlapping yaaW gene complicates functional attribution. The MbiA protein has not been directly detected at the protein level (PE 2, evidence at transcript level only). Full-length mbiA is restricted to Escherichia and Shigella, and shows evidence of purifying selection despite being nonessential.
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Download this section (compressed HTML)Q: Is MbiA protein actually expressed at the protein level in E. coli K12 under any growth conditions? Proteomics studies have not detected it.
Suggested experts: Klaus Neuhaus, Lea Fellner
Q: Can the biofilm phenotype attributed to mbiA disruption be cleanly separated from effects on the overlapping yaaW gene?
Suggested experts: Klaus Neuhaus, Siegfried Scherer
Q: Does the mbiA transcript produce a stable protein product, or is it a non-coding RNA that affects yaaW regulation?
Experiment: Use epitope-tagged mbiA expressed from its native promoter and perform Western blot detection under multiple growth conditions (exponential, stationary, biofilm, heat shock). If protein is undetectable, test whether the transcript functions as a regulatory antisense RNA affecting yaaW expression.
Hypothesis: MbiA protein is produced and stable under specific growth conditions
Type: protein detection
Experiment: Construct strand-specific synonymous mutations that disrupt mbiA coding while preserving yaaW (and vice versa) to cleanly separate the biofilm phenotype contributions of each overlapping gene.
Hypothesis: The biofilm phenotype maps specifically to mbiA and not yaaW disruption
Type: genetic dissection
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