mbiA

UniProt ID: P28697
Organism: Escherichia coli K-12
Review Status: COMPLETE
Aliases:
htgA htpY
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Gene Description

MbiA (also known as htgA/htpY) is a small (161 aa) uncharacterized orphan protein in E. coli K12 that arose by overprinting (de novo gene birth) within the antisense strand of the yaaW gene. It was originally proposed to be a heat shock gene regulated by sigma-32, but this was later refuted by genome-wide regulon analysis (PMID:16818608). The protein has no recognizable InterPro domains or known molecular function. The gene name mbiA (modifier of biofilm) derives from its Salmonella orthologue, and strand-specific mutagenesis shows differential biofilm phenotypes (PMID:24111745), though the overlapping yaaW gene complicates functional attribution. The MbiA protein has not been directly detected at the protein level (PE 2, evidence at transcript level only). Full-length mbiA is restricted to Escherichia and Shigella, and shows evidence of purifying selection despite being nonessential.

Core Functions

MbiA is an uncharacterized orphan protein with no known molecular function. The only phenotypic evidence is differential biofilm formation upon strand-specific gene disruption (PMID:24111745), but the overlapping yaaW gene on the antisense strand makes functional attribution uncertain. No enzymatic activity, binding partners, or molecular mechanism has been identified.

Supporting Evidence:
  • PMID:24111745
    Both mutants exhibited differential phenotypes in biofilm formation and metabolite levels in a nontargeted analysis, suggesting that both are functional
  • file:ECOLI/mbiA/mbiA-deep-research-falcon.md
    Across these sources, no enzymatic activity, binding partner, or defined signaling pathway is experimentally assigned to MbiA/HtpY. Fellner et al. explicitly state that functional explanations of metabolite changes are β€œhighly speculative.” (fellner2014phenotypeofhtga pages 3-5)

References

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Suggested Questions for Experts

Q: Is MbiA protein actually expressed at the protein level in E. coli K12 under any growth conditions? Proteomics studies have not detected it.

Suggested experts: Klaus Neuhaus, Lea Fellner

Q: Can the biofilm phenotype attributed to mbiA disruption be cleanly separated from effects on the overlapping yaaW gene?

Suggested experts: Klaus Neuhaus, Siegfried Scherer

Q: Does the mbiA transcript produce a stable protein product, or is it a non-coding RNA that affects yaaW regulation?

Suggested Experiments

Experiment: Use epitope-tagged mbiA expressed from its native promoter and perform Western blot detection under multiple growth conditions (exponential, stationary, biofilm, heat shock). If protein is undetectable, test whether the transcript functions as a regulatory antisense RNA affecting yaaW expression.

Hypothesis: MbiA protein is produced and stable under specific growth conditions

Type: protein detection

Experiment: Construct strand-specific synonymous mutations that disrupt mbiA coding while preserving yaaW (and vice versa) to cleanly separate the biofilm phenotype contributions of each overlapping gene.

Hypothesis: The biofilm phenotype maps specifically to mbiA and not yaaW disruption

Type: genetic dissection

Tags

orphan_gene overlapping_gene poorly_characterized de_novo_gene

Deep Research

Bioreason Pro

(mbiA-deep-research-bioreason-sft.md)

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Falcon

(mbiA-deep-research-falcon.md)

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πŸ“š Additional Documentation

Notes

(mbiA-notes.md)

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Bioreason Sft Review

(mbiA-bioreason-sft-review.md)

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