snapshot_type: uniprot_record_evidence_extract archive: repository: https://github.com/ai4curation/uniprot-orphan-analysis commit: f6a331cb47f61256ad070bbaa75567094ef64e8a extraction: Original source line ranges with two context lines; not complete records. Structured fields are selected from the same archived snapshots. Sequence values are replaced by lengths and SHA-256 digests. sources: - url: https://rest.uniprot.org/uniprotkb/Q00363.json retrieved_at: '2026-10-18T23:39:31.034480+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/uniprotkb/L7YE01.json retrieved_at: '2026-10-18T23:39:31.221110+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/proteomes/UP000756132.json retrieved_at: '2026-10-18T23:39:31.381379+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/Q00363?format=txt&versions=67 retrieved_at: '2026-10-18T23:39:34.034502+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/Q00363?format=txt&versions=81 retrieved_at: '2026-10-18T23:39:36.030914+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/Q00363?format=txt&versions=88 retrieved_at: '2026-10-18T23:39:38.442088+00:00' uniprot_release: '2026_03' observations: primary_accession: Q00363 alternative_accession: L7YE01 sequence_identical: true primary_sequence_length: 135 alternative_sequence_length: 135 shared_uniparc_id: UPI0000126679 same_taxon: true reference_proteome: UP000756132 proteome_is_reference: true proteome_taxon_matches: true primary_in_reference_proteome: false alternative_in_reference_proteome: true searched_reference_proteomes: - UP000756132 primary_in_any_reference_proteome: false sampled_history_versions: - 67 - 81 - 88 sampled_versions_with_proteome_links: [] current_records: - primaryAccession: Q00363 entryType: UniProtKB reviewed (Swiss-Prot) entryAudit: firstPublicDate: '1997-11-01' lastAnnotationUpdateDate: '2026-06-10' lastSequenceUpdateDate: '1996-11-01' entryVersion: 90 sequenceVersion: 1 genes: - geneName: value: AVR4 organism: scientificName: Fulvia fulva taxonId: 5499 sequence: length: 135 sha256: 2b225f7233e1cff383a1e4bf8d569c845c434d12a06d965f5d641d176f7264f2 uniProtKBCrossReferences: [] - primaryAccession: L7YE01 entryType: UniProtKB unreviewed (TrEMBL) entryAudit: firstPublicDate: '2013-04-03' lastAnnotationUpdateDate: '2026-09-02' lastSequenceUpdateDate: '2013-04-03' entryVersion: 43 sequenceVersion: 1 genes: - orfNames: - evidences: - evidenceCode: ECO:0000313 source: EMBL id: UJO19575.1 value: CLAFUR5_10112 organism: scientificName: Fulvia fulva taxonId: 5499 sequence: length: 135 sha256: 2b225f7233e1cff383a1e4bf8d569c845c434d12a06d965f5d641d176f7264f2 uniProtKBCrossReferences: - database: Proteomes id: UP000756132 properties: - key: Component value: Chromosome 7 reference_proteomes: - id: UP000756132 proteomeType: Reference proteome taxonomy: scientificName: Fulvia fulva commonName: Tomato leaf mold synonyms: - Passalora fulva taxonId: 5499 mnemonic: FULFL unisave_records: - entry_version: 67 url: https://rest.uniprot.org/unisave/Q00363?format=txt&versions=67 entry_date: 09-DEC-2015, entry version 67. proteomes: [] reference_proteome_keyword: false record_text: '' - entry_version: 81 url: https://rest.uniprot.org/unisave/Q00363?format=txt&versions=81 entry_date: 02-DEC-2020, entry version 81. proteomes: [] reference_proteome_keyword: false record_text: '' - entry_version: 88 url: https://rest.uniprot.org/unisave/Q00363?format=txt&versions=88 entry_date: 27-MAR-2024, entry version 88. proteomes: [] reference_proteome_keyword: false record_text: '' archived_sources: - path: genes/FULFL/AVR4/AVR4-record-evidence.yaml url: https://github.com/ai4curation/uniprot-orphan-analysis/blob/f6a331cb47f61256ad070bbaa75567094ef64e8a/genes/FULFL/AVR4/AVR4-record-evidence.yaml sha256: ad3e8cdaef907bf5f10a289c53bddd32dddcbe11a269e3a02dccd301b9926c01 excerpts: - start_line: 26 end_line: 38 text: |2 alternative_sequence_length: 135 shared_uniparc_id: UPI0000126679 same_taxon: true reference_proteome: UP000756132 proteome_is_reference: true proteome_taxon_matches: true primary_in_reference_proteome: false alternative_in_reference_proteome: true searched_reference_proteomes: - UP000756132 primary_in_any_reference_proteome: false sampled_history_versions: - 67 - start_line: 1163 end_line: 1168 text: | - entry_version: 67 url: https://rest.uniprot.org/unisave/Q00363?format=txt&versions=67 entry_date: 09-DEC-2015, entry version 67. proteomes: [] reference_proteome_keyword: false record_text: | - start_line: 1231 end_line: 1236 text: | - entry_version: 81 url: https://rest.uniprot.org/unisave/Q00363?format=txt&versions=81 entry_date: 02-DEC-2020, entry version 81. proteomes: [] reference_proteome_keyword: false record_text: | - start_line: 1330 end_line: 1335 text: | - entry_version: 88 url: https://rest.uniprot.org/unisave/Q00363?format=txt&versions=88 entry_date: 27-MAR-2024, entry version 88. proteomes: [] reference_proteome_keyword: false record_text: | - path: genes/FULFL/AVR4/AVR4-bioinformatics/reference-counterparts/comparison.yaml url: https://github.com/ai4curation/uniprot-orphan-analysis/blob/f6a331cb47f61256ad070bbaa75567094ef64e8a/genes/FULFL/AVR4/AVR4-bioinformatics/reference-counterparts/comparison.yaml sha256: 94cb1e5111c524c0240ee8d37139bc646553850a81a040af930b814537d8e4da excerpts: - start_line: 25 end_line: 29 text: |2 - -v - '1' target_sequence_count: 14687 query_sha256: b4bbff878b7ccc0c8be48587ad16f448aa495dd764b11c4c64ff63ba6d8b4aa6 targets_sha256: 35d8b487261f72aa4516f53be905a25950fdf4e9fa291fc85ebfe488c2a62f48 - start_line: 44 end_line: 48 text: |2 sha256: 35d8b487261f72aa4516f53be905a25950fdf4e9fa291fc85ebfe488c2a62f48 detailed_alignment_limit: 10 candidate_count: 1 candidates: - accession: L7YE01 - start_line: 51 end_line: 62 text: |2 bit_score: 295.0 global_score: 771.0 query_length: 135 target_length: 135 alignment_columns: 135 identities: 135 mismatches: 0 gap_columns: 0 identity_percent: 100.0 query_coverage_percent: 100.0 target_coverage_percent: 100.0 substitutions: [] comparison: provenance: query_accession: Q00363 run_at: '2026-10-18T23:34:57.627848+00:00' biopython_version: '1.85' mmseqs_version: 18-8cc5c command: - mmseqs - easy-search - genes/FULFL/AVR4/AVR4-bioinformatics/reference-counterparts/query.fasta - .cache/orphan-curated/UP000756132.fasta - genes/FULFL/AVR4/AVR4-bioinformatics/reference-counterparts/search.tsv - genes/FULFL/AVR4/AVR4-bioinformatics/reference-counterparts/tmp - --threads - '4' - -s - '7.5' - -e - 1e-5 - --max-seqs - '1000' - --format-output - query,target,pident,alnlen,qstart,qend,qlen,tstart,tend,tlen,evalue,bits - --remove-tmp-files - '1' - -v - '1' target_sequence_count: 14687 query_sha256: b4bbff878b7ccc0c8be48587ad16f448aa495dd764b11c4c64ff63ba6d8b4aa6 targets_sha256: 35d8b487261f72aa4516f53be905a25950fdf4e9fa291fc85ebfe488c2a62f48 global_alignment: mode: global matrix: BLOSUM62 open_gap: -10 extend_gap: -0.5 terminal_gaps_penalized: true identity_denominator: All global alignment columns, including gaps coverage_denominator: Full query/target length; numerator is paired nongap residues limitation: MMseqs2 heuristic search; no guarantee of exhaustive retrieval or locus equivalence target_source: url: https://rest.uniprot.org/uniprotkb/stream?query=proteome%3AUP000756132&format=fasta retrieved_at: '2026-10-18T23:32:39.118552+00:00' uniprot_release: '2026_03' sequence_count: 14687 sha256: 35d8b487261f72aa4516f53be905a25950fdf4e9fa291fc85ebfe488c2a62f48 detailed_alignment_limit: 10 candidate_count: 1 retained_alignment_count: 1 candidates: - accession: L7YE01 description: tr|L7YE01|L7YE01_FULFL Avr4 OS=Fulvia fulva OX=5499 GN=CLAFUR5_10112 PE=4 SV=1 evalue: 3.938e-93 bit_score: 295.0 global_score: 771.0 query_length: 135 target_length: 135 alignment_columns: 135 identities: 135 mismatches: 0 gap_columns: 0 identity_percent: 100.0 query_coverage_percent: 100.0 target_coverage_percent: 100.0