snapshot_type: uniprot_record_evidence_extract archive: repository: https://github.com/ai4curation/uniprot-orphan-analysis commit: f6a331cb47f61256ad070bbaa75567094ef64e8a extraction: Original source line ranges with two context lines; not complete records. Structured fields are selected from the same archived snapshots. Sequence values are replaced by lengths and SHA-256 digests. sources: - url: https://rest.uniprot.org/uniprotkb/P22287.json retrieved_at: '2026-10-18T23:39:17.735625+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/uniprotkb/L7YER9.json retrieved_at: '2026-10-18T23:39:17.901574+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/proteomes/UP000756132.json retrieved_at: '2026-10-18T23:39:18.053763+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/P22287?format=txt&versions=50 retrieved_at: '2026-10-18T23:39:20.512923+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/P22287?format=txt&versions=58 retrieved_at: '2026-10-18T23:39:23.910607+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/P22287?format=txt&versions=60 retrieved_at: '2026-10-18T23:39:26.039073+00:00' uniprot_release: '2026_03' observations: primary_accession: P22287 alternative_accession: L7YER9 sequence_identical: true primary_sequence_length: 63 alternative_sequence_length: 63 shared_uniparc_id: UPI000012667C same_taxon: true reference_proteome: UP000756132 proteome_is_reference: true proteome_taxon_matches: true primary_in_reference_proteome: false alternative_in_reference_proteome: true searched_reference_proteomes: - UP000756132 primary_in_any_reference_proteome: false sampled_history_versions: - 50 - 58 - 60 sampled_versions_with_proteome_links: [] current_records: - primaryAccession: P22287 entryType: UniProtKB reviewed (Swiss-Prot) entryAudit: firstPublicDate: '1991-08-01' lastAnnotationUpdateDate: '2026-06-10' lastSequenceUpdateDate: '1991-08-01' entryVersion: 61 sequenceVersion: 1 genes: - geneName: value: AVR9 organism: scientificName: Fulvia fulva taxonId: 5499 sequence: length: 63 sha256: a8a90965ded24cc79d76269eecd74aa16882e0e6185298f4e58520cb92115856 uniProtKBCrossReferences: [] - primaryAccession: L7YER9 entryType: UniProtKB unreviewed (TrEMBL) entryAudit: firstPublicDate: '2013-04-03' lastAnnotationUpdateDate: '2026-09-02' lastSequenceUpdateDate: '2013-04-03' entryVersion: 22 sequenceVersion: 1 genes: - orfNames: - evidences: - evidenceCode: ECO:0000313 source: EMBL id: UJO20306.1 value: CLAFUR5_09818 organism: scientificName: Fulvia fulva taxonId: 5499 sequence: length: 63 sha256: a8a90965ded24cc79d76269eecd74aa16882e0e6185298f4e58520cb92115856 uniProtKBCrossReferences: - database: Proteomes id: UP000756132 properties: - key: Component value: Chromosome 7 reference_proteomes: - id: UP000756132 proteomeType: Reference proteome taxonomy: scientificName: Fulvia fulva commonName: Tomato leaf mold synonyms: - Passalora fulva taxonId: 5499 mnemonic: FULFL unisave_records: - entry_version: 50 url: https://rest.uniprot.org/unisave/P22287?format=txt&versions=50 entry_date: 01-OCT-2014, entry version 50. proteomes: [] reference_proteome_keyword: false record_text: '' - entry_version: 58 url: https://rest.uniprot.org/unisave/P22287?format=txt&versions=58 entry_date: 02-DEC-2020, entry version 58. proteomes: [] reference_proteome_keyword: false record_text: '' - entry_version: 60 url: https://rest.uniprot.org/unisave/P22287?format=txt&versions=60 entry_date: 25-MAY-2022, entry version 60. proteomes: [] reference_proteome_keyword: false record_text: '' archived_sources: - path: genes/FULFL/AVR9/AVR9-record-evidence.yaml url: https://github.com/ai4curation/uniprot-orphan-analysis/blob/f6a331cb47f61256ad070bbaa75567094ef64e8a/genes/FULFL/AVR9/AVR9-record-evidence.yaml sha256: 9af5b1c23d0b0b7cb2ea2d370d88d0335c95b2f70389064332ba3b6cc6b1c7c2 excerpts: - start_line: 26 end_line: 38 text: |2 alternative_sequence_length: 63 shared_uniparc_id: UPI000012667C same_taxon: true reference_proteome: UP000756132 proteome_is_reference: true proteome_taxon_matches: true primary_in_reference_proteome: false alternative_in_reference_proteome: true searched_reference_proteomes: - UP000756132 primary_in_any_reference_proteome: false sampled_history_versions: - 50 - start_line: 900 end_line: 905 text: | - entry_version: 50 url: https://rest.uniprot.org/unisave/P22287?format=txt&versions=50 entry_date: 01-OCT-2014, entry version 50. proteomes: [] reference_proteome_keyword: false record_text: | - start_line: 998 end_line: 1003 text: | - entry_version: 58 url: https://rest.uniprot.org/unisave/P22287?format=txt&versions=58 entry_date: 02-DEC-2020, entry version 58. proteomes: [] reference_proteome_keyword: false record_text: | - start_line: 1107 end_line: 1112 text: | - entry_version: 60 url: https://rest.uniprot.org/unisave/P22287?format=txt&versions=60 entry_date: 25-MAY-2022, entry version 60. proteomes: [] reference_proteome_keyword: false record_text: | - path: genes/FULFL/AVR9/AVR9-bioinformatics/reference-counterparts/comparison.yaml url: https://github.com/ai4curation/uniprot-orphan-analysis/blob/f6a331cb47f61256ad070bbaa75567094ef64e8a/genes/FULFL/AVR9/AVR9-bioinformatics/reference-counterparts/comparison.yaml sha256: 05fe9d2e683a4341f0491aefce7595456c9e4d3640402a48410006229080121e excerpts: - start_line: 25 end_line: 29 text: |2 - -v - '1' target_sequence_count: 14687 query_sha256: a7bb675b33afcaceb971198628b2fc9c6f36e83d7924d9c61916f37a2a9dfa3c targets_sha256: 35d8b487261f72aa4516f53be905a25950fdf4e9fa291fc85ebfe488c2a62f48 - start_line: 44 end_line: 48 text: |2 sha256: 35d8b487261f72aa4516f53be905a25950fdf4e9fa291fc85ebfe488c2a62f48 detailed_alignment_limit: 10 candidate_count: 1 candidates: - accession: L7YER9 - start_line: 51 end_line: 62 text: |2 bit_score: 135.0 global_score: 344.0 query_length: 63 target_length: 63 alignment_columns: 63 identities: 63 mismatches: 0 gap_columns: 0 identity_percent: 100.0 query_coverage_percent: 100.0 target_coverage_percent: 100.0 substitutions: [] comparison: provenance: query_accession: P22287 run_at: '2026-10-18T23:34:42.623030+00:00' biopython_version: '1.85' mmseqs_version: 18-8cc5c command: - mmseqs - easy-search - genes/FULFL/AVR9/AVR9-bioinformatics/reference-counterparts/query.fasta - .cache/orphan-curated/UP000756132.fasta - genes/FULFL/AVR9/AVR9-bioinformatics/reference-counterparts/search.tsv - genes/FULFL/AVR9/AVR9-bioinformatics/reference-counterparts/tmp - --threads - '4' - -s - '7.5' - -e - 1e-5 - --max-seqs - '1000' - --format-output - query,target,pident,alnlen,qstart,qend,qlen,tstart,tend,tlen,evalue,bits - --remove-tmp-files - '1' - -v - '1' target_sequence_count: 14687 query_sha256: a7bb675b33afcaceb971198628b2fc9c6f36e83d7924d9c61916f37a2a9dfa3c targets_sha256: 35d8b487261f72aa4516f53be905a25950fdf4e9fa291fc85ebfe488c2a62f48 global_alignment: mode: global matrix: BLOSUM62 open_gap: -10 extend_gap: -0.5 terminal_gaps_penalized: true identity_denominator: All global alignment columns, including gaps coverage_denominator: Full query/target length; numerator is paired nongap residues limitation: MMseqs2 heuristic search; no guarantee of exhaustive retrieval or locus equivalence target_source: url: https://rest.uniprot.org/uniprotkb/stream?query=proteome%3AUP000756132&format=fasta retrieved_at: '2026-10-18T23:32:39.118552+00:00' uniprot_release: '2026_03' sequence_count: 14687 sha256: 35d8b487261f72aa4516f53be905a25950fdf4e9fa291fc85ebfe488c2a62f48 detailed_alignment_limit: 10 candidate_count: 1 retained_alignment_count: 1 candidates: - accession: L7YER9 description: tr|L7YER9|L7YER9_FULFL Avr9 OS=Fulvia fulva OX=5499 GN=CLAFUR5_09818 PE=4 SV=1 evalue: 6.21e-39 bit_score: 135.0 global_score: 344.0 query_length: 63 target_length: 63 alignment_columns: 63 identities: 63 mismatches: 0 gap_columns: 0 identity_percent: 100.0 query_coverage_percent: 100.0 target_coverage_percent: 100.0