ProtNLM2 External predictions
View prediction review YAML Β· DYNLT2B-protnlm-predictions-review.yaml Β· Review status: COMPLETE
The ten ProtNLM predictions match well-supported functions or localizations of intact mammalian DYNLT2B, but their transfer to this exact extended and C-terminally truncated horse protein remains unresolved.
Source documents: genes/HORSE/DYNLT2B/DYNLT2B-bioinformatics/RESULTS.md Β· genes/human/DYNLT2B/DYNLT2B-uniprot.txt Β· projects/PROTNLM_EVALUATION/mammal-benchmark/horse40-predictions.csv
Review score: 2 = concordant with evidence; 1 = uncertain; 0 = discordant with evidence. This is an assessment score, not a model probability.
- PMID:25830415: "Tctex1d2 associates with Wdr34, Wdr60, and other subunits of Dync1 and Dync2 and colocalizes with Wdr60 to microtubule organizing centers during interphase, the mitotic spindle poles during cell division, and the base of the cilium in ciliated cells."
- file:HORSE/DYNLT2B/DYNLT2B-bioinformatics/RESULTS.md: "The horse sequence A0A9L0SWY1 (245 residues) aligns to human Q8WW35 (142 residues) with 91.41% identity across 128 paired residues. Paired coverage is 90.14% of the human sequence and 52.24% of the horse sequence. ... - STRAND: human [128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140] DSLFCVVAAFGCF β horse [245, None, None, None, None, None, None, None, None, None, None, None, None] K------------."
- file:human/DYNLT2B/DYNLT2B-uniprot.txt: "FT STRAND 128..140 FT /evidence="ECO:0007829|PDB:8RGI""
- PMID:29742051: "Utilizing the visible immunoprecipitation assay, we demonstrated the interaction modes among the dynein-2 subunits, including previously undefined interactions, such as that between WDR60 and the TCTEX1D2-DYNLT1/DYNLT3 dimer. The dynein-2 complex can be divided into three subcomplexes, namely DYNC2H1-DYNC2LI1, WDR34-DYNLL1/DYNLL2-DYNLRB1/DYNLRB2, and WDR60-TCTEX1D2-DYNLT1/DYNLT3."
- file:HORSE/DYNLT2B/DYNLT2B-bioinformatics/RESULTS.md: "The horse sequence A0A9L0SWY1 (245 residues) aligns to human Q8WW35 (142 residues) with 91.41% identity across 128 paired residues. Paired coverage is 90.14% of the human sequence and 52.24% of the horse sequence. ... - STRAND: human [128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140] DSLFCVVAAFGCF β horse [245, None, None, None, None, None, None, None, None, None, None, None, None] K------------."
- file:human/DYNLT2B/DYNLT2B-uniprot.txt: "FT STRAND 128..140 FT /evidence="ECO:0007829|PDB:8RGI""
- PMID:25830415: "Tctex1d2 associates with Wdr34, Wdr60, and other subunits of Dync1 and Dync2 and colocalizes with Wdr60 to microtubule organizing centers during interphase, the mitotic spindle poles during cell division, and the base of the cilium in ciliated cells."
- file:HORSE/DYNLT2B/DYNLT2B-bioinformatics/RESULTS.md: "The horse sequence A0A9L0SWY1 (245 residues) aligns to human Q8WW35 (142 residues) with 91.41% identity across 128 paired residues. Paired coverage is 90.14% of the human sequence and 52.24% of the horse sequence. ... - STRAND: human [128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140] DSLFCVVAAFGCF β horse [245, None, None, None, None, None, None, None, None, None, None, None, None] K------------."
- file:human/DYNLT2B/DYNLT2B-uniprot.txt: "FT STRAND 128..140 FT /evidence="ECO:0007829|PDB:8RGI""
- PMID:29742051: "We established cell lines lacking WDR60 or TCTEX1D2, both of which are dynein-2-specific subunits encoded by ciliopathy-causing genes, and found that both WDR60-knockout (KO) and TCTEX1D2-KO cells show defects in retrograde ciliary protein trafficking, with WDR60-KO cells demonstrating more severe defects probably due to failed assembly of the dynein-2 complex."
- file:HORSE/DYNLT2B/DYNLT2B-bioinformatics/RESULTS.md: "The horse sequence A0A9L0SWY1 (245 residues) aligns to human Q8WW35 (142 residues) with 91.41% identity across 128 paired residues. Paired coverage is 90.14% of the human sequence and 52.24% of the horse sequence. ... - STRAND: human [128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140] DSLFCVVAAFGCF β horse [245, None, None, None, None, None, None, None, None, None, None, None, None] K------------."
- file:human/DYNLT2B/DYNLT2B-uniprot.txt: "FT STRAND 128..140 FT /evidence="ECO:0007829|PDB:8RGI""
- PMID:26044572: "Loss of TCTEX1D2 impairs retrograde intraflagellar transport (IFT) in humans and the protist Chlamydomonas, accompanied by destabilization of the retrograde IFT dynein motor. We thus define TCTEX1D2 as an integral component of the evolutionarily conserved retrograde IFT machinery."
- file:HORSE/DYNLT2B/DYNLT2B-bioinformatics/RESULTS.md: "The horse sequence A0A9L0SWY1 (245 residues) aligns to human Q8WW35 (142 residues) with 91.41% identity across 128 paired residues. Paired coverage is 90.14% of the human sequence and 52.24% of the horse sequence. ... - STRAND: human [128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140] DSLFCVVAAFGCF β horse [245, None, None, None, None, None, None, None, None, None, None, None, None] K------------."
- file:human/DYNLT2B/DYNLT2B-uniprot.txt: "FT STRAND 128..140 FT /evidence="ECO:0007829|PDB:8RGI""
- PMID:25830415: "Tctex1d2 and Wdr60 localize to the base of the cilium and their depletion causes defects in ciliogenesis."
- file:HORSE/DYNLT2B/DYNLT2B-bioinformatics/RESULTS.md: "The horse sequence A0A9L0SWY1 (245 residues) aligns to human Q8WW35 (142 residues) with 91.41% identity across 128 paired residues. Paired coverage is 90.14% of the human sequence and 52.24% of the horse sequence. ... - STRAND: human [128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140] DSLFCVVAAFGCF β horse [245, None, None, None, None, None, None, None, None, None, None, None, None] K------------."
- file:human/DYNLT2B/DYNLT2B-uniprot.txt: "FT STRAND 128..140 FT /evidence="ECO:0007829|PDB:8RGI""
- PMID:25830415: "Tctex1d2 associates with Wdr34, Wdr60, and other subunits of Dync1 and Dync2 and colocalizes with Wdr60 to microtubule organizing centers during interphase, the mitotic spindle poles during cell division, and the base of the cilium in ciliated cells."
- file:HORSE/DYNLT2B/DYNLT2B-bioinformatics/RESULTS.md: "The horse sequence A0A9L0SWY1 (245 residues) aligns to human Q8WW35 (142 residues) with 91.41% identity across 128 paired residues. Paired coverage is 90.14% of the human sequence and 52.24% of the horse sequence. ... - STRAND: human [128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140] DSLFCVVAAFGCF β horse [245, None, None, None, None, None, None, None, None, None, None, None, None] K------------."
- file:human/DYNLT2B/DYNLT2B-uniprot.txt: "FT STRAND 128..140 FT /evidence="ECO:0007829|PDB:8RGI""
- PMID:25830415: "overexpression of LAP(EGFP-TEV-S-Peptide)-Tctex1d2 led to the localization of LAP-Tctex1d2 to the ciliary axoneme (Fig. 3I), similar to what had been observed with Wdr60 overexpression.4"
- file:HORSE/DYNLT2B/DYNLT2B-bioinformatics/RESULTS.md: "The horse sequence A0A9L0SWY1 (245 residues) aligns to human Q8WW35 (142 residues) with 91.41% identity across 128 paired residues. Paired coverage is 90.14% of the human sequence and 52.24% of the horse sequence. ... - STRAND: human [128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140] DSLFCVVAAFGCF β horse [245, None, None, None, None, None, None, None, None, None, None, None, None] K------------."
- file:human/DYNLT2B/DYNLT2B-uniprot.txt: "FT STRAND 128..140 FT /evidence="ECO:0007829|PDB:8RGI""
- PMID:25830415: "Tctex1d2 associates with Wdr34, Wdr60, and other subunits of Dync1 and Dync2 and colocalizes with Wdr60 to microtubule organizing centers during interphase, the mitotic spindle poles during cell division, and the base of the cilium in ciliated cells."
- file:HORSE/DYNLT2B/DYNLT2B-bioinformatics/RESULTS.md: "The horse sequence A0A9L0SWY1 (245 residues) aligns to human Q8WW35 (142 residues) with 91.41% identity across 128 paired residues. Paired coverage is 90.14% of the human sequence and 52.24% of the horse sequence. ... - STRAND: human [128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140] DSLFCVVAAFGCF β horse [245, None, None, None, None, None, None, None, None, None, None, None, None] K------------."
- file:human/DYNLT2B/DYNLT2B-uniprot.txt: "FT STRAND 128..140 FT /evidence="ECO:0007829|PDB:8RGI""
- PMID:25205765: "We show that the proteins encoded by the ciliopathy genes WDR34 and WDR60 are bona fide dynein-2 intermediate chains and are both required for dynein-2 function. In addition, we identify TCTEX1D2 as a unique dynein-2 light chain that is itself required for cilia function."
- file:HORSE/DYNLT2B/DYNLT2B-bioinformatics/RESULTS.md: "The horse sequence A0A9L0SWY1 (245 residues) aligns to human Q8WW35 (142 residues) with 91.41% identity across 128 paired residues. Paired coverage is 90.14% of the human sequence and 52.24% of the horse sequence. ... - STRAND: human [128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140] DSLFCVVAAFGCF β horse [245, None, None, None, None, None, None, None, None, None, None, None, None] K------------."
- file:human/DYNLT2B/DYNLT2B-uniprot.txt: "FT STRAND 128..140 FT /evidence="ECO:0007829|PDB:8RGI""