ProtNLM2 External predictions
View prediction review YAML Β· GEMIN5-protnlm-predictions-review.yaml Β· Review status: COMPLETE
The nuclear prediction is broad but supported. Four RNA-function predictions are uncertain for a horse model with a WD40-boundary deletion; protein-ubiquitination participation lacks a demonstrated mechanism.
Source documents: projects/PROTNLM_EVALUATION/mammal-benchmark/horse40-predictions.csv Β· projects/PROTNLM_EVALUATION/mammal-benchmark/predictions.jsonl.gz Β· projects/PROTNLM_EVALUATION/mammal-benchmark/paired-sequences/GEMIN5.json
Review score: 2 = concordant with evidence; 1 = uncertain; 0 = discordant with evidence. This is an assessment score, not a model probability.
- PMID:27881600: "the WD40 domain of Gemin5 is both necessary and sufficient for binding the Sm site of pre-snRNAs"
- PMID:11714716: "Gemin5 interacts with several of the snRNP core proteins including SmB, SmD1, SmD2, SmD3, and SmE, suggesting that it participates in the activities of the SMN complex in snRNP assembly."
- file:HORSE/GEMIN5/GEMIN5-uniprot.txt: "DR InterPro; IPR052640; Gemin-5."
- file:HORSE/GEMIN5/GEMIN5-bioinformatics/RESULTS.md: "share 89.2% identity among"
- file:HORSE/GEMIN5/GEMIN5-bioinformatics/RESULTS.md: "The horse sequence lacks the aligned human segment 723β798."
- PMID:27881600: "the WD40 domain of Gemin5 is both necessary and sufficient for binding the Sm site of pre-snRNAs"
- PMID:25911097: "Gemin5 binding to the SMN 3β²-UTR activates expression of SMN protein by increasing translation of the SMN mRNA."
- file:HORSE/GEMIN5/GEMIN5-uniprot.txt: "DR InterPro; IPR052640; Gemin-5."
- PMID:11714716: "Immunolocalization studies demonstrate that Gemin5 is found in the cytoplasm and in the nucleus, where it colocalizes with SMN in gems."
- file:HORSE/GEMIN5/GEMIN5-uniprot.txt: "DR InterPro; IPR052640; Gemin-5."
- file:HORSE/GEMIN5/GEMIN5-bioinformatics/RESULTS.md: "share 89.2% identity among"
- PMID:27881600: "the WD40 domain of Gemin5 recognizes the Sm site and m7G cap of pre-snRNAs via two distinct binding sites"
- file:HORSE/GEMIN5/GEMIN5-uniprot.txt: "DR InterPro; IPR052640; Gemin-5."
- file:HORSE/GEMIN5/GEMIN5-bioinformatics/RESULTS.md: "share 89.2% identity among"
- file:HORSE/GEMIN5/GEMIN5-bioinformatics/RESULTS.md: "The horse sequence lacks the aligned human segment 723β798."
- PMID:25911097: "Gemin5 directly binds to the mature SMN 3β²-UTR immediately upstream of the poly(A) tail."
- file:HORSE/GEMIN5/GEMIN5-uniprot.txt: "DR InterPro; IPR052640; Gemin-5."
- file:HORSE/GEMIN5/GEMIN5-bioinformatics/RESULTS.md: "share 89.2% identity among"
- file:HORSE/GEMIN5/GEMIN5-bioinformatics/RESULTS.md: "The horse sequence lacks the aligned human segment 723β798."
- PMID:25911097: "Gemin5 binding to the SMN 3β²-UTR activates expression of SMN protein by increasing translation of the SMN mRNA."
- PMID:27507887: "His-Gemin5 binds to ribosome particles via its N-terminal domain."
- file:HORSE/GEMIN5/GEMIN5-uniprot.txt: "DR InterPro; IPR052640; Gemin-5."
- file:HORSE/GEMIN5/GEMIN5-bioinformatics/RESULTS.md: "share 89.2% identity among"
- file:HORSE/GEMIN5/GEMIN5-bioinformatics/RESULTS.md: "The horse sequence lacks the aligned human segment 723β798."