ProtNLM2 External predictions
View prediction review YAML · OLFML2A-protnlm-predictions-review.yaml · Review status: COMPLETE
The conserved photomedin family supports extracellular glycosaminoglycan binding and dimerization, but the selected horse model lacks the canonical signal-peptide segment. All four sequence-specific predictions remain unresolved; matrix organization additionally lacks direct mechanistic support.
Source documents: projects/PROTNLM_EVALUATION/mammal-benchmark/horse40-predictions.csv · projects/PROTNLM_EVALUATION/mammal-benchmark/predictions.jsonl.gz · projects/PROTNLM_EVALUATION/mammal-benchmark/paired-sequences/OLFML2A.json · genes/HORSE/OLFML2A/OLFML2A-hypotheses/horse40-extracellular-matrix-localization/openscientist.md
Review score: 2 = concordant with evidence; 1 = uncertain; 0 = discordant with evidence. This is an assessment score, not a model probability.
- PMID:15836428: "Among a panel of ECM components, including glycosaminoglycans, photomedins preferentially bound to chondroitin sulphate-E and heparin."
- PMID:15836428: "These proteins, named photomedin-1 and photomedin-2, were secreted as disulphide-bonded dimers (photomedin-1) or oligomers/multimers (photomedin-2) with O-linked carbohydrate chains"
- file:HORSE/OLFML2A/OLFML2A-uniprot.txt: "DR PANTHER; PTHR23192:SF29; OLFACTOMEDIN-LIKE PROTEIN 2A; 1."
- file:HORSE/OLFML2A/OLFML2A-bioinformatics/RESULTS.md: "share 91.3% identity among 598 paired residues."
- file:HORSE/OLFML2A/OLFML2A-bioinformatics/RESULTS.md: "Human UniProt annotates residues 1–27 as the signal peptide; the horse sequence starts `MDSQVFGDMDQVRMTSEGSDCRCKCIMRPLSKDA`, without the hydrophobic human leader."
- file:human/OLFML2A/OLFML2A-uniprot.txt: "FT SIGNAL 1..27"
- PMID:15836428: "These proteins, named photomedin-1 and photomedin-2, were secreted as disulphide-bonded dimers (photomedin-1) or oligomers/multimers (photomedin-2) with O-linked carbohydrate chains"
- file:human/OLFML2A/OLFML2A-uniprot.txt: "DE AltName: Full=Photomedin-1;"
- file:HORSE/OLFML2A/OLFML2A-uniprot.txt: "DR PANTHER; PTHR23192:SF29; OLFACTOMEDIN-LIKE PROTEIN 2A; 1."
- file:HORSE/OLFML2A/OLFML2A-bioinformatics/RESULTS.md: "share 91.3% identity among 598 paired residues."
- file:HORSE/OLFML2A/OLFML2A-bioinformatics/RESULTS.md: "Human UniProt annotates residues 1–27 as the signal peptide; the horse sequence starts `MDSQVFGDMDQVRMTSEGSDCRCKCIMRPLSKDA`, without the hydrophobic human leader."
- file:human/OLFML2A/OLFML2A-uniprot.txt: "FT SIGNAL 1..27"
- PMID:15836428: "These proteins, named photomedin-1 and photomedin-2, were secreted as disulphide-bonded dimers (photomedin-1) or oligomers/multimers (photomedin-2) with O-linked carbohydrate chains"
- PMID:15836428: "Among a panel of ECM components, including glycosaminoglycans, photomedins preferentially bound to chondroitin sulphate-E and heparin."
- PMID:15836428: "We screened more than 60000 RIKEN mouse cDNAs for novel ECM (extracellular matrix) proteins"
- file:HORSE/OLFML2A/OLFML2A-uniprot.txt: "DR PANTHER; PTHR23192:SF29; OLFACTOMEDIN-LIKE PROTEIN 2A; 1."
- file:HORSE/OLFML2A/OLFML2A-bioinformatics/RESULTS.md: "share 91.3% identity among 598 paired residues."
- file:HORSE/OLFML2A/OLFML2A-bioinformatics/RESULTS.md: "Human UniProt annotates residues 1–27 as the signal peptide; the horse sequence starts `MDSQVFGDMDQVRMTSEGSDCRCKCIMRPLSKDA`, without the hydrophobic human leader."
- file:human/OLFML2A/OLFML2A-uniprot.txt: "FT SIGNAL 1..27"
- file:HORSE/OLFML2A/OLFML2A-hypotheses/horse40-extracellular-matrix-localization/openscientist.md: "GO:0031012 is defensible as an ISS/ISO annotation with the signal-peptide-truncation caveat noted"
- PMID:15836428: "Among a panel of ECM components, including glycosaminoglycans, photomedins preferentially bound to chondroitin sulphate-E and heparin."
- PMID:15836428: "We screened more than 60000 RIKEN mouse cDNAs for novel ECM (extracellular matrix) proteins"
- file:HORSE/OLFML2A/OLFML2A-uniprot.txt: "DR PANTHER; PTHR23192:SF29; OLFACTOMEDIN-LIKE PROTEIN 2A; 1."
- file:HORSE/OLFML2A/OLFML2A-bioinformatics/RESULTS.md: "share 91.3% identity among 598 paired residues."
- file:HORSE/OLFML2A/OLFML2A-bioinformatics/RESULTS.md: "Human UniProt annotates residues 1–27 as the signal peptide; the horse sequence starts `MDSQVFGDMDQVRMTSEGSDCRCKCIMRPLSKDA`, without the hydrophobic human leader."
- file:human/OLFML2A/OLFML2A-uniprot.txt: "FT SIGNAL 1..27"