id: Q6RHR6
gene_symbol: DMI1
product_type: PROTEIN
status: COMPLETE
taxon:
  id: NCBITaxon:3880
  label: Medicago truncatula
description: >-
  DMI1 (DOES NOT MAKE INFECTIONS 1) is the Medicago truncatula POLLUX-type member of the
  CASTOR/POLLUX family of cation channels. It has four predicted transmembrane helices and
  a large cytosolic C-terminal region with two RCK (regulator of K+ conductance) domains
  that form an MthK-like, Ca2+-regulated gating ring. DMI1 resides in the nuclear envelope
  of root cells, preferentially in the inner nuclear membrane, where it forms a complex
  with the Ca2+-permeable cyclic nucleotide-gated channels CNGC15a/b/c. Within this
  complex DMI1 is required to activate CNGC15 and acts as a pacemaker that sets the
  frequency of the nuclear and perinuclear Ca2+ oscillations ("calcium spiking") induced
  by rhizobial Nod factors and arbuscular mycorrhizal fungal signals. Its native pore is a
  non-selective cation filter that conducts K+ in planar bilayers; the leading model is
  that DMI1 provides counter-ion flux across the nuclear envelope during Ca2+ release,
  although Ca2+ permeability of the related Lotus CASTOR channel has been reported. dmi1
  mutants lack Nod factor-induced calcium spiking and fail to establish both root nodule
  and arbuscular mycorrhizal symbioses, placing DMI1 in the common symbiosis signalling
  pathway upstream of the Ca2+ decoder CCaMK/DMI3.
alternative_records:
- id: G7IN96
  relationship: REFERENCE_PROTEOME_EQUIVALENT
  reference_proteome: UP000002051
  reviewed_on: '2026-10-19'
  reason: Retain Q6RHR6 as the primary Swiss-Prot accession. The reference sequence is exactly identical
    across all 882 residues and is separated from CASTOR-like paralogs. Primary-record genomic cross-references
    provide additional mapping context. This supports equivalent DMI1 protein representation; the broad
    pollux-like target label is not a separate functional assertion.
  evidence:
  - type: PROTEOME_SEARCH
    description: MMseqs2 searched 57,093 sequences across UP000002051 at E <= 1e-5 and sensitivity 7.5,
      returning 13 hits. Every returned sequence was globally aligned using BLOSUM62 with gap-open -10
      and extension -0.5. Scores and sequences for all 13 returned candidates are retained, with 10 detailed
      alignment files. The heuristic search does not establish genomic absence or unique locus identity.
    supported_by:
    - reference_id: file:MEDTR/DMI1/DMI1-record-evidence.yaml
      supporting_text: 'target_sequence_count: 57093'
    - reference_id: file:MEDTR/DMI1/DMI1-record-evidence.yaml
      supporting_text: 'candidate_count: 13'
  - type: SEQUENCE_COMPARISON
    description: 'G7IN96: 882 identities across 882 global-alignment columns (100.0% identity including
      gaps), 0 substitutions and 0 gap columns. Query coverage is 100.0%; target coverage is 100.0%. Sequence
      similarity is interpreted in the manual rationale. Identity over paired residues is 100.0000% (882/882);
      gap columns are excluded from this denominator.'
    supported_by:
    - reference_id: file:MEDTR/DMI1/DMI1-record-evidence.yaml
      supporting_text: |-
        query_length: 882
          target_length: 882
          alignment_columns: 882
          identities: 882
          mismatches: 0
          gap_columns: 0
          identity_percent: 100.0
          query_coverage_percent: 100.0
          target_coverage_percent: 100.0
  - type: PROTEOME_MEMBERSHIP
    description: The primary accession is outside every searched exact-taxon reference proteome. Current
      UniProt records place G7IN96 in UP000002051 and give it the same taxon as the primary.
    supported_by:
    - reference_id: file:MEDTR/DMI1/DMI1-record-evidence.yaml
      supporting_text: 'primary_in_any_reference_proteome: false'
    - reference_id: file:MEDTR/DMI1/DMI1-record-evidence.yaml
      supporting_text: 'alternative_in_reference_proteome: true'
    - reference_id: file:MEDTR/DMI1/DMI1-record-evidence.yaml
      supporting_text: 'same_taxon: true'
  - type: RECORD_HISTORY
    description: 'Sampled UniSave observations: 09-DEC-2015, entry version 56.: no Proteomes cross-reference;
      07-OCT-2020, entry version 83.: no Proteomes cross-reference; 27-NOV-2024, entry version 95.: no
      Proteomes cross-reference. These dated observations do not establish uninterrupted membership/absence,
      the exact change date, or UniProt''s motivation.'
    supported_by:
    - reference_id: file:MEDTR/DMI1/DMI1-record-evidence.yaml
      supporting_text: |-
        entry_date: 09-DEC-2015, entry version 56.
          proteomes: []
    - reference_id: file:MEDTR/DMI1/DMI1-record-evidence.yaml
      supporting_text: |-
        entry_date: 07-OCT-2020, entry version 83.
          proteomes: []
    - reference_id: file:MEDTR/DMI1/DMI1-record-evidence.yaml
      supporting_text: |-
        entry_date: 27-NOV-2024, entry version 95.
          proteomes: []
existing_annotations:
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:27230377
  qualifier: enables
  supporting_entities:
  - UniProtKB:A0A072VMJ3
  review:
    summary: >-
      Interaction of DMI1 (via its C-terminus) with CNGC15c (A0A072VMJ3), one of the three
      nuclear-envelope Ca2+-permeable CNGC15 channels with which DMI1 forms a complex
      (Charpentier et al. 2016).
    action: MODIFY
    reason: >-
      The interaction is real and functionally important, but "protein binding" is
      uninformative. The functional content of the DMI1-CNGC15 interaction is that DMI1
      regulates CNGC15 gating: DMI1 is essential for activating CNGC15 and acts as a
      pacemaker for the oscillation frequency, with Ca2+-dependent mobility of the DMI1
      C-terminal region (the region that binds the CNGC15 N-terminus) modulating CNGC15
      gating (Cook et al. 2025). This matches "ion channel regulator activity" (modulates
      the activity of a channel via direct interaction with it).
    proposed_replacement_terms:
    - id: GO:0099106
      label: ion channel regulator activity
    additional_reference_ids:
    - PMID:39814887
    supported_by:
    - reference_id: PMID:27230377
      supporting_text: We demonstrate that the cyclic nucleotide-gated channels form a
        complex with the postassium-permeable channel, which modulates nuclear Ca(2+)
        release.
    - reference_id: PMID:39814887
      supporting_text: Together, these results demonstrate that DMI1 is not only essential
        for activating CNGC15, but it also acts as a pacemaker for the frequency of nuclear
        Ca2+ oscillations
    - reference_id: PMID:39814887
      supporting_text: This result further suggests that the mobility of the DMI1
        C-terminal region in response to Ca2+ binding contributes to the pacemaker activity
        by modulating CNGC15 gating.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:27230377
  qualifier: enables
  supporting_entities:
  - UniProtKB:G7IBJ4
  review:
    summary: >-
      Interaction of DMI1 with CNGC15a (G7IBJ4) in the nuclear-envelope DMI1-CNGC15
      channel complex (Charpentier et al. 2016).
    action: MODIFY
    reason: >-
      As for the CNGC15c row: the interaction underlies DMI1 regulation of CNGC15 gating
      (activation and pacemaking of oscillation frequency; Cook et al. 2025), so the
      informative term is ion channel regulator activity rather than protein binding.
    proposed_replacement_terms:
    - id: GO:0099106
      label: ion channel regulator activity
    additional_reference_ids:
    - PMID:39814887
    supported_by:
    - reference_id: PMID:27230377
      supporting_text: We demonstrate that the cyclic nucleotide-gated channels form a
        complex with the postassium-permeable channel, which modulates nuclear Ca(2+)
        release.
    - reference_id: PMID:39814887
      supporting_text: Together, these results demonstrate that DMI1 is not only essential
        for activating CNGC15, but it also acts as a pacemaker for the frequency of nuclear
        Ca2+ oscillations
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:27230377
  qualifier: enables
  supporting_entities:
  - UniProtKB:G7JND3
  review:
    summary: >-
      Interaction of DMI1 with CNGC15b (G7JND3) in the nuclear-envelope DMI1-CNGC15
      channel complex (Charpentier et al. 2016); the interaction is retained by the
      autoactive DMI1 S760N variant (Liu et al. 2022).
    action: MODIFY
    reason: >-
      As for the other CNGC15 rows: the interaction is the physical basis for DMI1
      regulation of CNGC15 gating. Autoactive DMI1 drives spontaneous Ca2+ oscillations
      only in a CNGC15-dependent manner (Liu et al. 2022), and DMI1 activates and paces
      CNGC15 (Cook et al. 2025). Replace protein binding with ion channel regulator
      activity.
    proposed_replacement_terms:
    - id: GO:0099106
      label: ion channel regulator activity
    additional_reference_ids:
    - PMID:35972963
    - PMID:39814887
    supported_by:
    - reference_id: PMID:35972963
      supporting_text: Here, we demonstrate spontaneous activation of this channel complex,
        through gain-of-function mutations in DMI1, leading to spontaneous nuclear Ca2+
        oscillations and spontaneous nodulation, in a CNGC15-dependent manner.
    - reference_id: PMID:39814887
      supporting_text: Together, these results demonstrate that DMI1 is not only essential
        for activating CNGC15, but it also acts as a pacemaker for the frequency of nuclear
        Ca2+ oscillations
- term:
    id: GO:0006811
    label: monoatomic ion transport
  evidence_type: IEA
  original_reference_id: GO_REF:0000002
  qualifier: involved_in
  supporting_entities:
  - InterPro:IPR044849
  review:
    summary: >-
      InterPro2GO mapping from the CASTOR/POLLUX/SYM8-like family. DMI1 is a cation
      channel (bilayer K+ conductance; non-selective cationic selectivity filter), so ion
      transport is correct but very general.
    action: MODIFY
    reason: >-
      DMI1 is a channel conducting cations across the nuclear envelope; the more precise
      process is monoatomic cation transmembrane transport. Cook et al. (2025) describe the
      native DMI1 filter as non-selective cationic, and Charpentier et al. (2016) describe
      DMI1 as potassium-permeable.
    proposed_replacement_terms:
    - id: GO:0098655
      label: monoatomic cation transmembrane transport
    supported_by:
    - reference_id: PMID:39814887
      supporting_text: To confirm that the non-selective cation permeability of DMI1 is not
        essential for its function, we swapped the non-selective cationic filter of DMI1
        that comprised the motif 'ADAGN' with the strictly potassium-selective signature
        'TVGYG'
    - reference_id: PMID:14963334
      supporting_text: The DMI1 (does not make infections) gene encodes a novel protein with
        low global similarity to a ligand-gated cation channel domain of archaea.
- term:
    id: GO:0006813
    label: potassium ion transport
  evidence_type: IEA
  original_reference_id: GO_REF:0000002
  qualifier: involved_in
  supporting_entities:
  - InterPro:IPR003148
  review:
    summary: >-
      InterPro2GO mapping from the RCK_N domain. For DMI1 it is supported directly: DMI1
      conducts K+ in planar lipid bilayers (about 64 pS in symmetrical KCl; Venkateshwaran
      et al. 2012), it is described as the potassium-permeable partner of CNGC15
      (Charpentier et al. 2016), and a strictly K+-selective pore variant fully restores
      DMI1 function in planta (Cook et al. 2025).
    action: ACCEPT
    reason: >-
      Although the RCK_N domain alone would be weak grounds for a potassium transport
      claim, the experimental data for DMI1 support K+ conduction, and the TVGYG swap shows
      that K+ permeation is sufficient for symbiotic function. The Ca2+ selectivity
      reported for Lotus CASTOR (Kim et al. 2019) is homolog evidence and does not refute K+
      transport by DMI1.
    additional_reference_ids:
    - PMID:22706284
    - PMID:31420535
    supported_by:
    - reference_id: PMID:27230377
      supporting_text: A potassium-permeable channel is known to be required for symbiotic
        Ca(2+) oscillations
    - reference_id: PMID:39814887
      supporting_text: These results demonstrate that substituting a non-selective filter
        with a potassium-selective filter does not impair the function of DMI1.
    - reference_id: file:MEDTR/DMI1/DMI1-deep-research-falcon.md
      supporting_text: The strongest **direct MtDMI1 ion-conduction measurement** is a
        single-channel conductance of approximately **64 pS in symmetrical KCl** in
        planar-bilayer experiments.
    - reference_id: PMID:31420535
      supporting_text: Initial studies using yeast rescue assays and artificial lipid
        bilayers suggested that CASTOR, POLLUX, and DMI1 could be K+ channels
- term:
    id: GO:0031965
    label: nuclear membrane
  evidence_type: EXP
  original_reference_id: PMID:27230377
  qualifier: located_in
  review:
    summary: >-
      DMI1 localizes to the nuclear envelope together with CNGC15 (Charpentier et al.
      2016), consistent with earlier localization of functional DMI1-GFP to the nuclear
      envelope (Riely et al. 2007) and immunogold data showing preferential inner nuclear
      membrane localization (Capoen et al. 2011).
    action: ACCEPT
    reason: >-
      Nuclear membrane localization is well established by multiple independent studies
      and is where DMI1 functions in generating nuclear Ca2+ oscillations.
    additional_reference_ids:
    - PMID:17173544
    - PMID:21825141
    supported_by:
    - reference_id: PMID:17173544
      supporting_text: we report here that a functional DMI1::GFP fusion is localized to
        the nuclear envelope in M. truncatula roots when expressed both from a constitutive
        35S promoter and from a native DMI1 promoter.
    - reference_id: PMID:21825141
      supporting_text: we found that the cation channel DMI1, which is essential for
        symbiotic calcium oscillations, is preferentially located on the inner nuclear
        membrane
- term:
    id: GO:0031965
    label: nuclear membrane
  evidence_type: IEA
  original_reference_id: GO_REF:0000044
  qualifier: located_in
  supporting_entities:
  - UniProtKB-SubCell:SL-0182
  review:
    summary: >-
      UniProt subcellular-location mapping (Nucleus membrane), based on the same
      experimental localization studies.
    action: ACCEPT
    reason: >-
      Consistent with the experimental nuclear envelope / inner nuclear membrane
      localization of DMI1.
    supported_by:
    - reference_id: PMID:17173544
      supporting_text: These new data place DMI1 in the nuclear envelope in close proximity
        to the origin of Nod-factor-induced calcium spiking.
- term:
    id: GO:0005261
    label: monoatomic cation channel activity
  evidence_type: IDA
  original_reference_id: PMID:22706284
  review:
    summary: >-
      DMI1 forms cation channels in planar lipid bilayers (about 64 pS in symmetrical KCl,
      long open state; Venkateshwaran et al. 2012). Its native selectivity filter (ADAGN) is
      a non-selective cation filter, and a strictly K+-selective (TVGYG) variant is fully
      functional in planta (Cook et al. 2025).
    action: NEW
    reason: >-
      DMI1 has no molecular function annotation in GOA other than protein binding, yet
      direct electrophysiology shows it is a cation channel. The generic cation channel
      term is used, matching the treatment of the Lotus homolog CASTOR, because native
      selectivity (K+ versus broader cation or Ca2+ permeation) is still debated; the K+
      conduction is captured by the accepted potassium ion transport annotation.
    additional_reference_ids:
    - PMID:39814887
    supported_by:
    - reference_id: PMID:22706284
      supporting_text: Electrophysiological characterization of DMI1 and Lj-CASTOR
        (wild-type and mutants) by planar lipid bilayer experiments combined with calcium
        imaging in Human Embryonic Kidney-293 cells expressing DMI1 (the wild type and
        mutants) suggest that the serine-to-alanine substitution conferred reduced
        conductance with a long open state to DMI1
    - reference_id: file:MEDTR/DMI1/DMI1-deep-research-falcon.md
      supporting_text: The strongest **direct MtDMI1 ion-conduction measurement** is a
        single-channel conductance of approximately **64 pS in symmetrical KCl** in
        planar-bilayer experiments.
    - reference_id: PMID:39814887
      supporting_text: These results demonstrate that substituting a non-selective filter
        with a potassium-selective filter does not impair the function of DMI1.
- term:
    id: GO:0009877
    label: nodulation
  evidence_type: IMP
  original_reference_id: PMID:14963334
  review:
    summary: >-
      dmi1 mutants are unable to form nodules with rhizobia: they show no Nod
      factor-induced calcium spiking and no nodule formation. DMI1 is a working component
      of the nuclear Ca2+ oscillator that transduces the Nod factor signal (it activates
      and paces the CNGC15 Ca2+ channels), and gain-of-function DMI1 alleles drive
      spontaneous nodulation.
    action: NEW
    reason: >-
      Participation: DMI1 does part of the work of nodulation signalling, as a channel and
      CNGC15 regulator in the Ca2+ oscillator; it is not a substrate of the process.
      Comparator check: CNGC15A and CNGC15B, the partner channels in the same complex and
      in the same pathway role, carry IMP nodulation annotations (from PMID:27230377), as do
      CCaMK and CYCLOPS, the next steps in the pathway. DMI1 lacks this annotation
      despite being the founding gene of the oscillator, which looks like a gap rather than
      a deliberate convention.
    additional_reference_ids:
    - PMID:35972963
    - PMID:39814887
    supported_by:
    - reference_id: PMID:14963334
      supporting_text: Several of the plant genes required for transduction of rhizobial
        signals, the Nod factors, are also necessary for mycorrhizal symbiosis. Here, we
        describe the cloning and characterization of one such gene from the legume Medicago
        truncatula.
    - reference_id: PMID:35972963
      supporting_text: Here, we demonstrate spontaneous activation of this channel complex,
        through gain-of-function mutations in DMI1, leading to spontaneous nuclear Ca2+
        oscillations and spontaneous nodulation, in a CNGC15-dependent manner.
- term:
    id: GO:0036377
    label: arbuscular mycorrhizal association
  evidence_type: IMP
  original_reference_id: PMID:14963334
  review:
    summary: >-
      DMI1 is a common symbiosis pathway gene required for arbuscular mycorrhizal (AM)
      symbiosis as well as nodulation. Medicago DMI1 also restores AM colonization in a
      dmi1 mutant of the liverwort Marchantia paleacea, showing conservation of this role
      across land plants.
    action: NEW
    reason: >-
      Same participation and comparator arguments as for nodulation: the nuclear Ca2+
      oscillator generated by DMI1 and CNGC15 is used by both symbioses, and CNGC15A and
      CNGC15B carry IMP arbuscular mycorrhizal association annotations from the same work
      (PMID:27230377). Keeping this distinct from any defense-response term is
      appropriate; DMI1 has no demonstrated role in immunity.
    additional_reference_ids:
    - PMID:39140702
    supported_by:
    - reference_id: PMID:14963334
      supporting_text: Several of the plant genes required for transduction of rhizobial
        signals, the Nod factors, are also necessary for mycorrhizal symbiosis.
    - reference_id: file:MEDTR/DMI1/DMI1-deep-research-falcon.md
      supporting_text: found that MtDMI1 restored mycorrhizal colonization in a
        DMI1-deficient liverwort, *Marchantia paleacea*.
core_functions:
- description: >-
    Nuclear-envelope cation channel of the CASTOR/POLLUX family. Its native non-selective
    cationic pore conducts K+ (planar bilayers; K+-selective pore variant is fully
    functional), consistent with providing counter-ion flux across the inner nuclear
    membrane during symbiotic Ca2+ release, which is required for nodulation and arbuscular
    mycorrhizal symbiosis.
  molecular_function:
    id: GO:0005261
    label: monoatomic cation channel activity
  directly_involved_in:
  - id: GO:0098655
    label: monoatomic cation transmembrane transport
  - id: GO:0009877
    label: nodulation
  - id: GO:0036377
    label: arbuscular mycorrhizal association
  locations:
  - id: GO:0031965
    label: nuclear membrane
  supported_by:
  - reference_id: PMID:39814887
    supporting_text: These results demonstrate that substituting a non-selective filter
      with a potassium-selective filter does not impair the function of DMI1.
  - reference_id: PMID:21825141
    supporting_text: we found that the cation channel DMI1, which is essential for
      symbiotic calcium oscillations, is preferentially located on the inner nuclear
      membrane
  - reference_id: PMID:14963334
    supporting_text: Several of the plant genes required for transduction of rhizobial
      signals, the Nod factors, are also necessary for mycorrhizal symbiosis.
- description: >-
    Regulator of the CNGC15 Ca2+ channels: DMI1 binds CNGC15a/b/c in a nuclear-envelope
    complex, is essential for CNGC15 activation, and through Ca2+-dependent movement of its
    RCK gating ring acts as the pacemaker that sets the frequency of symbiotic nuclear Ca2+
    oscillations.
  molecular_function:
    id: GO:0099106
    label: ion channel regulator activity
  directly_involved_in:
  - id: GO:0009877
    label: nodulation
  - id: GO:0036377
    label: arbuscular mycorrhizal association
  locations:
  - id: GO:0031965
    label: nuclear membrane
  supported_by:
  - reference_id: PMID:27230377
    supporting_text: We demonstrate that the cyclic nucleotide-gated channels form a
      complex with the postassium-permeable channel, which modulates nuclear Ca(2+)
      release.
  - reference_id: PMID:39814887
    supporting_text: Together, these results demonstrate that DMI1 is not only essential
      for activating CNGC15, but it also acts as a pacemaker for the frequency of nuclear
      Ca2+ oscillations
  - reference_id: PMID:35972963
    supporting_text: Here, we demonstrate spontaneous activation of this channel complex,
      through gain-of-function mutations in DMI1, leading to spontaneous nuclear Ca2+
      oscillations and spontaneous nodulation, in a CNGC15-dependent manner.
references:
- id: file:MEDTR/DMI1/DMI1-record-evidence.yaml
  title: Compact archived record and sequence evidence for Q6RHR6
- id: GO_REF:0000002
  title: Gene Ontology annotation through association of InterPro records with GO
    terms
  findings: []
- id: GO_REF:0000044
  title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location
    vocabulary mapping, accompanied by conservative changes to GO terms applied by
    UniProt
  findings: []
- id: PMID:27230377
  title: Nuclear-localized cyclic nucleotide-gated channels mediate symbiotic calcium
    oscillations.
  findings:
  - statement: CNGC15a/b/c are nuclear-envelope Ca2+-permeable channels that form a
      complex with the potassium-permeable channel DMI1.
    supporting_text: We demonstrate that the cyclic nucleotide-gated channels form a
      complex with the postassium-permeable channel, which modulates nuclear Ca(2+)
      release.
  reference_review:
    relevance: HIGH
    correctness: VERIFIED
    review_notes: Abstract only in cache; source of the IPI (CNGC15a/b/c) and EXP nuclear
      membrane rows.
- id: PMID:14963334
  title: Medicago truncatula DMI1 required for bacterial and fungal symbioses in legumes.
  findings:
  - statement: Cloning of DMI1, required for both rhizobial and mycorrhizal symbioses;
      encodes a protein similar to an archaeal ligand-gated cation channel.
  reference_review:
    relevance: HIGH
    correctness: VERIFIED
    review_notes: Cited by UniProt for disruption phenotype; abstract only.
- id: PMID:17173544
  title: The symbiotic ion channel homolog DMI1 is localized in the nuclear membrane
    of Medicago truncatula roots.
  findings:
  - statement: Functional DMI1-GFP localizes to the nuclear envelope.
- id: PMID:17631529
  title: The Medicago truncatula DMI1 protein modulates cytosolic calcium signaling.
  findings:
  - statement: DMI1 C-terminal RCK region is regulatory; DMI1 modulates Ca2+ release in
      yeast and is proposed to regulate Ca2+ channels rather than release Ca2+ itself.
    supporting_text: This work suggests that DMI1 is not directly responsible for Nod
      factor-induced calcium changes, but does have the capacity to regulate calcium
      channels in both yeast and plants.
- id: PMID:21825141
  title: Nuclear membranes control symbiotic calcium signaling of legumes.
  findings:
  - statement: DMI1 is preferentially located in the inner nuclear membrane.
- id: PMID:22706284
  title: The recent evolution of a symbiotic ion channel in the legume family altered
    ion conductance and improved functionality in calcium signaling.
  findings:
  - statement: A selectivity-filter Ser-to-Ala substitution made DMI1 solo sufficient
      for symbiosis, replacing both Lotus CASTOR and POLLUX; bilayer recordings of DMI1.
- id: PMID:31420535
  title: Ca(2+)-regulated Ca(2+) channels with an RCK gating ring control plant symbiotic
    associations.
  findings:
  - statement: Lotus CASTOR (a DMI1 homolog) behaves as a Ca2+-regulated Ca2+ channel,
      challenging the K+ counter-ion model; homolog evidence only.
  reference_review:
    relevance: MEDIUM
    correctness: DISPUTED
    review_notes: Data are on Lotus CASTOR, not DMI1; Cook et al. 2025 show a K+-selective
      DMI1 pore is fully functional.
- id: PMID:35972963
  title: Constitutive activation of a nuclear-localized calcium channel complex in Medicago
    truncatula.
  findings:
  - statement: Gain-of-function DMI1 RCK-interface mutations (S760N) cause spontaneous
      Ca2+ oscillations and nodulation in a CNGC15-dependent manner.
- id: PMID:39140702
  title: 'CNGC15 and DMI1 ion channel gating in nuclear calcium signaling: opening new
    questions and closing controversies.'
  findings:
  - statement: Review of DMI1 and CNGC15 gating; exact function of DMI1 remains open.
- id: PMID:39814887
  title: Autoactive CNGC15 enhances root endosymbiosis in legume and wheat.
  findings:
  - statement: DMI1 is required to activate CNGC15 and acts as pacemaker of nuclear Ca2+
      oscillation frequency; a K+-selective DMI1 pore variant is fully functional.
- id: file:MEDTR/DMI1/DMI1-deep-research-falcon.md
  title: Deep research report on Medicago truncatula DMI1 (falcon)
  findings: []
suggested_questions:
- question: >-
    What ions does native, full-length DMI1 conduct in the inner nuclear membrane, and in
    which direction? The K+-selective TVGYG pore variant is fully functional, while the
    Lotus homolog CASTOR has been reported as Ca2+-selective; should the core MF be
    potassium channel activity rather than generic cation channel activity?
- question: >-
    Does DMI1 regulate CNGC15 gating primarily through direct protein contact (RCK gating
    ring to CNGC15 N-terminus) or electrically, through changing nuclear membrane
    potential? The answer determines whether "ion channel regulator activity" is the right
    MF term.
- question: >-
    Should a GO term exist for generation of symbiotic nuclear calcium oscillations, so
    that DMI1, CNGC15 and MCA8 can be annotated to the oscillator step rather than only to
    nodulation and arbuscular mycorrhizal association?
suggested_experiments:
- description: >-
    Patch-clamp of native inner nuclear membranes (nuclear patch) from wild-type and dmi1
    roots, or of full-length DMI1 reconstituted with CNGC15, to measure K+/Ca2+ permeability
    ratios under physiological gradients.
- description: >-
    Separation-of-function DMI1 mutants that keep channel conductance but disrupt the
    CNGC15-binding interface (and vice versa), tested for Nod factor-induced spiking
    frequency, to separate the conduction and channel-regulator roles.
