Rv0898c

UniProt ID: P9WKP5
Organism: Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Review Status: DRAFT
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Gene Description

A small (87 aa) conserved hypothetical protein of unknown function in Mycobacterium tuberculosis H37Rv. Contains a single DUF2630 domain (Pfam PF10944, InterPro IPR020311) spanning nearly the entire protein. Detected at the protein level by mass spectrometry in whole cell lysates. Non-essential for in vitro growth. mRNA is upregulated after 96 hours of nutrient starvation, suggesting a possible role in stress adaptation, but no molecular function has been established for Rv0898c or any member of the DUF2630 family.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0003674 molecular_function
ND NEW
Summary: No molecular function has been established for Rv0898c or any member of the DUF2630 family. The InterPro entry IPR020311 explicitly states this entry contains proteins with no known function and has no GO term mappings.
Reason: The root molecular function term with ND (No biological Data) evidence is used to explicitly document that no molecular function annotation is supported for this protein. The BioReason SFT trace speculated about protein binding and CoA biosynthesis but these claims are entirely unsupported. A dedicated 3-iteration OpenScientist run (AlphaFold + Foldseek) reached the same conclusion. Although the DUF2630 fold is classifiable as a two-helix antiparallel hairpin (top Foldseek hit uL29 ribosomal protein at only 27% identity, twilight zone; CATH topology 1.10.287, shared by >600 functionally diverse superfamilies), the DUF2630-specific motif (CWDLLRQRR) has no match in any characterized protein, so no molecular function can be inferred and the ND annotation should be retained.
Supporting Evidence:
file:MYCTU/Rv0898c/Rv0898c-deep-research-bioreason-sft.md
file:MYCTU/Rv0898c/Rv0898c-hypotheses/fold-discovery-duf2630/openscientist.md
The current ND (no data) molecular function annotation should be retained.
file:MYCTU/Rv0898c/Rv0898c-hypotheses/fold-discovery-duf2630/openscientist.md
the DUF2630-specific conserved motif (CWDLLRQRR) has no matches in any characterized protein
GO:0005737 cytoplasm
IDA
PMID:21969609
Proteogenomic analysis of Mycobacterium tuberculosis by high...
NEW
Summary: Rv0898c protein was detected in whole cell lysates but not in membrane or culture filtrate fractions by mass spectrometry, consistent with cytoplasmic localization.
Reason: Proteomics data from high-resolution mass spectrometry detected Rv0898c in whole cell lysates but not in membrane or secreted fractions, supporting cytoplasmic localization.
Supporting Evidence:
PMID:21969609
we identified 3176 proteins from Mycobacterium tuberculosis representing ~80% of its total predicted gene count

Core Functions

Rv0898c is an uncharacterized protein with no experimentally determined molecular function. The DUF2630 domain family (IPR020311) has no GO mappings and no characterized members across any organism. The protein is small (87 aa), soluble (no transmembrane domains, detected in cytoplasmic fraction), and upregulated under starvation conditions, which may suggest a role in nutrient stress adaptation. However, no specific molecular function, binding partners, or biological process involvement has been demonstrated.

Cellular Locations:
Supporting Evidence:
  • PMID:21969609
    we identified 3176 proteins from Mycobacterium tuberculosis representing ~80% of its total predicted gene count

References

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Suggested Questions for Experts

Q: What is the three-dimensional structure of Rv0898c and does it reveal any structural similarity to proteins of known function?

Q: Does Rv0898c interact with any other M. tuberculosis proteins, particularly those involved in stress response or starvation survival?

Q: What is the phenotype of an Rv0898c knockout under starvation or in vivo infection conditions?

Suggested Experiments

Experiment: Determine the crystal or NMR structure of Rv0898c and perform structural similarity searches (e.g. Dali, Foldseek) to identify distant functional homologs

Experiment: Perform affinity purification coupled with mass spectrometry (AP-MS) to identify interaction partners of Rv0898c in M. tuberculosis

Experiment: Construct an Rv0898c deletion mutant and test survival under nutrient starvation, hypoxia, and in macrophage infection models

Experiment: Perform transcriptomic analysis of Rv0898c knockout versus wild-type under starvation conditions to identify downstream effects

Deep Research

Bioreason Pro

(Rv0898c-deep-research-bioreason-sft.md)

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OpenScientist

(Rv0898c-hypotheses/fold-discovery-duf2630/openscientist.md)

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πŸ“š Additional Documentation

Notes

(Rv0898c-notes.md)

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Bioreason Sft Review

(Rv0898c-bioreason-sft-review.md)

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πŸ“„ View Raw YAML

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