snapshot_type: uniprot_record_evidence_extract
archive:
  repository: https://github.com/ai4curation/uniprot-orphan-analysis
  commit: f6a331cb47f61256ad070bbaa75567094ef64e8a
extraction: Original source line ranges with two context lines; not complete records. Structured fields
  are selected from the same archived snapshots. Sequence values are replaced by lengths and SHA-256 digests.
sources:
- url: https://rest.uniprot.org/uniprotkb/A0A7E6FSU6.json
  retrieved_at: '2026-10-18T23:38:45.612508+00:00'
  uniprot_release: '2026_03'
- url: https://rest.uniprot.org/proteomes/UP001162480.json
  retrieved_at: '2026-10-18T23:38:46.764493+00:00'
  uniprot_release: '2026_03'
- url: https://rest.uniprot.org/unisave/A0A7E6FSU6?format=txt&versions=16
  retrieved_at: '2026-10-18T23:38:48.739200+00:00'
  uniprot_release: '2026_03'
observations:
  primary_accession: A0A7E6FSU6
  alternative_accession: null
  sequence_identical: null
  primary_sequence_length: 336
  alternative_sequence_length: null
  shared_uniparc_id: null
  same_taxon: null
  reference_proteome: UP001162480
  proteome_is_reference: true
  proteome_taxon_matches: true
  primary_in_reference_proteome: false
  alternative_in_reference_proteome: null
  searched_reference_proteomes:
  - UP001162480
  primary_in_any_reference_proteome: false
  sampled_history_versions:
  - 16
  sampled_versions_with_proteome_links:
  - 16
current_records:
- primaryAccession: A0A7E6FSU6
  entryType: UniProtKB reviewed (Swiss-Prot)
  entryAudit:
    firstPublicDate: '2024-03-27'
    lastAnnotationUpdateDate: '2026-09-02'
    lastSequenceUpdateDate: '2021-02-10'
    entryVersion: 20
    sequenceVersion: 1
  genes:
  - geneName:
      evidences:
      - evidenceCode: ECO:0000305
      value: DDO
    synonyms:
    - value: LOC115226122
  organism:
    scientificName: Octopus vulgaris
    taxonId: 6645
  sequence:
    length: 336
    sha256: 89177fe1d83b7831b411b40d8146eddd1624242d17fda307d9ec00e26062d4cb
  uniProtKBCrossReferences: []
reference_proteomes:
- id: UP001162480
  proteomeType: Reference proteome
  taxonomy:
    scientificName: Octopus vulgaris
    commonName: Common octopus
    taxonId: 6645
    mnemonic: OCTVU
unisave_records:
- entry_version: 16
  url: https://rest.uniprot.org/unisave/A0A7E6FSU6?format=txt&versions=16
  entry_date: 27-NOV-2024, entry version 16.
  proteomes:
  - UP000515154
  reference_proteome_keyword: true
  record_text: ''
archived_sources:
- path: genes/OCTVU/DDO/DDO-record-evidence.yaml
  url: https://github.com/ai4curation/uniprot-orphan-analysis/blob/f6a331cb47f61256ad070bbaa75567094ef64e8a/genes/OCTVU/DDO/DDO-record-evidence.yaml
  sha256: 7ebe3f2c15994bd6faac2d490f436e7534cf4abd360cf06fdce2716ed748a803
  excerpts:
  - start_line: 25
    end_line: 29
    text: |2
        searched_reference_proteomes:
        - UP001162480
        primary_in_any_reference_proteome: false
        sampled_history_versions:
        - 16
  - start_line: 1158
    end_line: 1164
    text: |
      - entry_version: 16
        url: https://rest.uniprot.org/unisave/A0A7E6FSU6?format=txt&versions=16
        entry_date: 27-NOV-2024, entry version 16.
        proteomes:
        - UP000515154
        reference_proteome_keyword: true
        record_text: |
- path: genes/OCTVU/DDO/DDO-bioinformatics/reference-counterparts/comparison.yaml
  url: https://github.com/ai4curation/uniprot-orphan-analysis/blob/f6a331cb47f61256ad070bbaa75567094ef64e8a/genes/OCTVU/DDO/DDO-bioinformatics/reference-counterparts/comparison.yaml
  sha256: ad85ca9355af3d4055d9cca73de990473a921e58196b2b17ba691f84da892fb5
  excerpts:
  - start_line: 25
    end_line: 29
    text: |2
        - -v
        - '1'
        target_sequence_count: 29931
        query_sha256: aa517c006efcdea73eae619504625c25a3894f776c7b2561c27758e6d7c2f1ae
        targets_sha256: d3b1cd2bc932b285080959a5d72fe1f25c9624c490b24457ff84c046d997c3f4
  - start_line: 44
    end_line: 48
    text: |2
          sha256: d3b1cd2bc932b285080959a5d72fe1f25c9624c490b24457ff84c046d997c3f4
        detailed_alignment_limit: 10
      candidate_count: 4
      candidates:
      - accession: A0AA36BXI5
comparison:
  provenance:
    query_accession: A0A7E6FSU6
    run_at: '2026-10-18T23:32:59.451224+00:00'
    biopython_version: '1.85'
    mmseqs_version: 18-8cc5c
    command:
    - mmseqs
    - easy-search
    - genes/OCTVU/DDO/DDO-bioinformatics/reference-counterparts/query.fasta
    - .cache/orphan-curated/UP001162480.fasta
    - genes/OCTVU/DDO/DDO-bioinformatics/reference-counterparts/search.tsv
    - genes/OCTVU/DDO/DDO-bioinformatics/reference-counterparts/tmp
    - --threads
    - '4'
    - -s
    - '7.5'
    - -e
    - 1e-5
    - --max-seqs
    - '1000'
    - --format-output
    - query,target,pident,alnlen,qstart,qend,qlen,tstart,tend,tlen,evalue,bits
    - --remove-tmp-files
    - '1'
    - -v
    - '1'
    target_sequence_count: 29931
    query_sha256: aa517c006efcdea73eae619504625c25a3894f776c7b2561c27758e6d7c2f1ae
    targets_sha256: d3b1cd2bc932b285080959a5d72fe1f25c9624c490b24457ff84c046d997c3f4
    global_alignment:
      mode: global
      matrix: BLOSUM62
      open_gap: -10
      extend_gap: -0.5
      terminal_gaps_penalized: true
    identity_denominator: All global alignment columns, including gaps
    coverage_denominator: Full query/target length; numerator is paired nongap residues
    limitation: MMseqs2 heuristic search; no guarantee of exhaustive retrieval or locus equivalence
    target_source:
      url: https://rest.uniprot.org/uniprotkb/stream?query=proteome%3AUP001162480&format=fasta
      retrieved_at: '2026-10-18T23:32:52.088088+00:00'
      uniprot_release: '2026_03'
      sequence_count: 29931
      sha256: d3b1cd2bc932b285080959a5d72fe1f25c9624c490b24457ff84c046d997c3f4
    detailed_alignment_limit: 10
  candidate_count: 4
  retained_alignment_count: 4
  candidates:
  - accession: A0AA36BXI5
    description: tr|A0AA36BXI5|A0AA36BXI5_OCTVU D-amino-acid oxidase-like OS=Octopus vulgaris OX=6645
      GN=OCTVUL_1B029046 PE=3 SV=1
    evalue: 1.399e-40
    bit_score: 154.0
    global_score: 341.0
    query_length: 336
    target_length: 235
    alignment_columns: 341
    identities: 93
    mismatches: 137
    gap_columns: 111
    identity_percent: 27.2727
    query_coverage_percent: 68.4524
    target_coverage_percent: 97.8723
  - accession: A0AA36BZ05
    description: tr|A0AA36BZ05|A0AA36BZ05_OCTVU D-amino-acid oxidase-like OS=Octopus vulgaris OX=6645
      GN=OCTVUL_1B029046 PE=3 SV=1
    evalue: 1.904e-40
    bit_score: 154.0
    global_score: 330.0
    query_length: 336
    target_length: 236
    alignment_columns: 338
    identities: 88
    mismatches: 146
    gap_columns: 104
    identity_percent: 26.0355
    query_coverage_percent: 69.6429
    target_coverage_percent: 99.1525