snapshot_type: uniprot_record_evidence_extract archive: repository: https://github.com/ai4curation/uniprot-orphan-analysis commit: f6a331cb47f61256ad070bbaa75567094ef64e8a extraction: Original source line ranges with two context lines; not complete records. Structured fields are selected from the same archived snapshots. Sequence values are replaced by lengths and SHA-256 digests. sources: - url: https://rest.uniprot.org/uniprotkb/B5UBC1.json retrieved_at: '2026-10-18T23:38:49.610001+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/uniprotkb/Q2QZF2.json retrieved_at: '2026-10-18T23:38:49.781867+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/proteomes/UP000059680.json retrieved_at: '2026-10-18T23:38:50.020661+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/B5UBC1?format=txt&versions=28 retrieved_at: '2026-10-18T23:38:52.123577+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/B5UBC1?format=txt&versions=50 retrieved_at: '2026-10-18T23:38:55.658824+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/B5UBC1?format=txt&versions=64 retrieved_at: '2026-10-18T23:38:57.549715+00:00' uniprot_release: '2026_03' observations: primary_accession: B5UBC1 alternative_accession: Q2QZF2 sequence_identical: false primary_sequence_length: 1143 alternative_sequence_length: 1125 shared_uniparc_id: null same_taxon: true reference_proteome: UP000059680 proteome_is_reference: true proteome_taxon_matches: true primary_in_reference_proteome: false alternative_in_reference_proteome: true searched_reference_proteomes: - UP000059680 primary_in_any_reference_proteome: false sampled_history_versions: - 28 - 50 - 64 sampled_versions_with_proteome_links: [] current_records: - primaryAccession: B5UBC1 entryType: UniProtKB reviewed (Swiss-Prot) entryAudit: firstPublicDate: '2018-07-18' lastAnnotationUpdateDate: '2026-09-02' lastSequenceUpdateDate: '2008-11-25' entryVersion: 69 sequenceVersion: 1 genes: - geneName: evidences: - evidenceCode: ECO:0000312 source: EMBL id: BAG71909.1 value: PIKM1-TS synonyms: - evidences: - evidenceCode: ECO:0000312 source: EMBL id: ADE80944.1 - evidenceCode: ECO:0000312 source: EMBL id: ADE80945.1 - evidenceCode: ECO:0000312 source: EMBL id: ADE80946.1 - evidenceCode: ECO:0000312 source: EMBL id: ADE80948.1 - evidenceCode: ECO:0000312 source: EMBL id: ADE80951.1 value: PI-KM1 organism: scientificName: Oryza sativa subsp. japonica taxonId: 39947 sequence: length: 1143 sha256: c0eb25a3645feba54d2016ad41125fc57a3938807e46be2d5ef1e80f279bbf61 uniProtKBCrossReferences: [] - primaryAccession: Q2QZF2 entryType: UniProtKB reviewed (Swiss-Prot) entryAudit: firstPublicDate: '2018-07-18' lastAnnotationUpdateDate: '2026-09-02' lastSequenceUpdateDate: '2006-01-24' entryVersion: 111 sequenceVersion: 1 genes: - geneName: evidences: - evidenceCode: ECO:0000303 source: PubMed id: '18940787' value: PIK5-NP synonyms: - evidences: - evidenceCode: ECO:0000312 source: EMBL id: BAH79844.1 - evidenceCode: ECO:0000312 source: EMBL id: BAH79845.1 - evidenceCode: ECO:0000312 source: EMBL id: BAH79846.1 value: PIKM1 orderedLocusNames: - evidences: - evidenceCode: ECO:0000312 source: EMBL id: BAT15296.1 value: Os11g0688832 - evidences: - evidenceCode: ECO:0000312 source: EMBL id: ABA95385.1 value: LOC_Os11g46200 organism: scientificName: Oryza sativa subsp. japonica taxonId: 39947 sequence: length: 1125 sha256: 4196f33690ee5dc4519cac7eae97db175c8f5037cc90c3eeb3846c248a7b4fdf uniProtKBCrossReferences: - database: Gramene id: Os11t0688832-01 properties: - key: ProteinId value: Os11t0688832-01 - key: GeneId value: Os11g0688832 - database: Proteomes id: UP000059680 properties: - key: Component value: Chromosome 11 reference_proteomes: - id: UP000059680 proteomeType: Reference proteome taxonomy: scientificName: Oryza sativa subsp. japonica commonName: Rice taxonId: 39947 mnemonic: ORYSJ unisave_records: - entry_version: 28 url: https://rest.uniprot.org/unisave/B5UBC1?format=txt&versions=28 entry_date: 09-DEC-2015, entry version 28. proteomes: [] reference_proteome_keyword: false record_text: '' - entry_version: 50 url: https://rest.uniprot.org/unisave/B5UBC1?format=txt&versions=50 entry_date: 11-DEC-2019, entry version 50. proteomes: [] reference_proteome_keyword: false record_text: '' - entry_version: 64 url: https://rest.uniprot.org/unisave/B5UBC1?format=txt&versions=64 entry_date: 27-NOV-2024, entry version 64. proteomes: [] reference_proteome_keyword: false record_text: '' archived_sources: - path: genes/ORYSJ/PIKM1-TS/PIKM1-TS-record-evidence.yaml url: https://github.com/ai4curation/uniprot-orphan-analysis/blob/f6a331cb47f61256ad070bbaa75567094ef64e8a/genes/ORYSJ/PIKM1-TS/PIKM1-TS-record-evidence.yaml sha256: 126b62e29461d440ff18a5c7dfcfba65694fe6f7492640783b06dffdd2f3e5fa excerpts: - start_line: 26 end_line: 38 text: |2 alternative_sequence_length: 1125 shared_uniparc_id: null same_taxon: true reference_proteome: UP000059680 proteome_is_reference: true proteome_taxon_matches: true primary_in_reference_proteome: false alternative_in_reference_proteome: true searched_reference_proteomes: - UP000059680 primary_in_any_reference_proteome: false sampled_history_versions: - 28 - start_line: 88 end_line: 92 text: |2 source: EMBL id: BAG71909.1 value: PIKM1-TS synonyms: - evidences: - start_line: 1048 end_line: 1052 text: |2 source: PubMed id: '18940787' value: PIK5-NP synonyms: - evidences: - start_line: 1060 end_line: 1064 text: |2 source: EMBL id: BAH79846.1 value: PIKM1 orderedLocusNames: - evidences: - start_line: 1084 end_line: 1088 text: |2 an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. At the opposite of cultivar Kusabue, the cultivar Nipponbare doesn't recognize the effector avirulence protein AVR-Pik from M.oryzae commentType: FUNCTION - start_line: 2151 end_line: 2156 text: | - entry_version: 28 url: https://rest.uniprot.org/unisave/B5UBC1?format=txt&versions=28 entry_date: 09-DEC-2015, entry version 28. proteomes: [] reference_proteome_keyword: false record_text: | - start_line: 2236 end_line: 2241 text: | - entry_version: 50 url: https://rest.uniprot.org/unisave/B5UBC1?format=txt&versions=50 entry_date: 11-DEC-2019, entry version 50. proteomes: [] reference_proteome_keyword: false record_text: | - start_line: 2433 end_line: 2438 text: | - entry_version: 64 url: https://rest.uniprot.org/unisave/B5UBC1?format=txt&versions=64 entry_date: 27-NOV-2024, entry version 64. proteomes: [] reference_proteome_keyword: false record_text: | - path: genes/ORYSJ/PIKM1-TS/PIKM1-TS-bioinformatics/reference-counterparts/comparison.yaml url: https://github.com/ai4curation/uniprot-orphan-analysis/blob/f6a331cb47f61256ad070bbaa75567094ef64e8a/genes/ORYSJ/PIKM1-TS/PIKM1-TS-bioinformatics/reference-counterparts/comparison.yaml sha256: 63b9256c1da3fd748576b2518590e3e80251db1192923e9ea825e7085eb699ad excerpts: - start_line: 25 end_line: 29 text: |2 - -v - '1' target_sequence_count: 48896 query_sha256: d05dfd512d15f04651d7eaaf65aec5447ab5255009594536ad746729ad3684e9 targets_sha256: b38f535a59131e6ea44278e4d553bf418972dbcbda74cb374e7445844dc51963 - start_line: 44 end_line: 48 text: |2 sha256: b38f535a59131e6ea44278e4d553bf418972dbcbda74cb374e7445844dc51963 detailed_alignment_limit: 10 candidate_count: 384 candidates: - accession: Q2QZF2 - start_line: 52 end_line: 64 text: |2 bit_score: 1188.0 global_score: 3081.0 query_length: 1143 target_length: 1125 alignment_columns: 1193 identities: 697 mismatches: 378 gap_columns: 118 identity_percent: 58.4241 query_coverage_percent: 94.0507 target_coverage_percent: 95.5556 substitutions: - query_position: 6 comparison: provenance: query_accession: B5UBC1 run_at: '2026-10-18T23:33:12.553250+00:00' biopython_version: '1.85' mmseqs_version: 18-8cc5c command: - mmseqs - easy-search - genes/ORYSJ/PIKM1-TS/PIKM1-TS-bioinformatics/reference-counterparts/query.fasta - .cache/orphan-curated/UP000059680.fasta - genes/ORYSJ/PIKM1-TS/PIKM1-TS-bioinformatics/reference-counterparts/search.tsv - genes/ORYSJ/PIKM1-TS/PIKM1-TS-bioinformatics/reference-counterparts/tmp - --threads - '4' - -s - '7.5' - -e - 1e-5 - --max-seqs - '1000' - --format-output - query,target,pident,alnlen,qstart,qend,qlen,tstart,tend,tlen,evalue,bits - --remove-tmp-files - '1' - -v - '1' target_sequence_count: 48896 query_sha256: d05dfd512d15f04651d7eaaf65aec5447ab5255009594536ad746729ad3684e9 targets_sha256: b38f535a59131e6ea44278e4d553bf418972dbcbda74cb374e7445844dc51963 global_alignment: mode: global matrix: BLOSUM62 open_gap: -10 extend_gap: -0.5 terminal_gaps_penalized: true identity_denominator: All global alignment columns, including gaps coverage_denominator: Full query/target length; numerator is paired nongap residues limitation: MMseqs2 heuristic search; no guarantee of exhaustive retrieval or locus equivalence target_source: url: https://rest.uniprot.org/uniprotkb/stream?query=proteome%3AUP000059680&format=fasta retrieved_at: '2026-10-18T23:32:29.836656+00:00' uniprot_release: '2026_03' sequence_count: 48896 sha256: b38f535a59131e6ea44278e4d553bf418972dbcbda74cb374e7445844dc51963 detailed_alignment_limit: 10 candidate_count: 384 retained_alignment_count: 10 candidates: - accession: Q2QZF2 description: sp|Q2QZF2|PIK5_ORYSJ Disease resistance protein PIK5-NP OS=Oryza sativa subsp. japonica OX=39947 GN=PIK5-NP PE=2 SV=1 evalue: 0.0 bit_score: 1188.0 global_score: 3081.0 query_length: 1143 target_length: 1125 alignment_columns: 1193 identities: 697 mismatches: 378 gap_columns: 118 identity_percent: 58.4241 query_coverage_percent: 94.0507 target_coverage_percent: 95.5556 - accession: Q6Z011 description: tr|Q6Z011|Q6Z011_ORYSJ Os08g0388300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0388300 PE=1 SV=1 evalue: 1.252e-63 bit_score: 241.0 global_score: 748.0 query_length: 1143 target_length: 974 alignment_columns: 1230 identities: 318 mismatches: 569 gap_columns: 343 identity_percent: 25.8537 query_coverage_percent: 77.6028 target_coverage_percent: 91.0678