snapshot_type: uniprot_record_evidence_extract archive: repository: https://github.com/ai4curation/uniprot-orphan-analysis commit: f6a331cb47f61256ad070bbaa75567094ef64e8a extraction: Original source line ranges with two context lines; not complete records. Structured fields are selected from the same archived snapshots. Sequence values are replaced by lengths and SHA-256 digests. sources: - url: https://rest.uniprot.org/uniprotkb/F7J0N2.json retrieved_at: '2026-10-18T23:38:58.368371+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/uniprotkb/Q2R8L1.json retrieved_at: '2026-10-18T23:38:58.533729+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/proteomes/UP000059680.json retrieved_at: '2026-10-18T23:38:58.755397+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/F7J0N2?format=txt&versions=12 retrieved_at: '2026-10-18T23:39:00.427245+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/F7J0N2?format=txt&versions=31 retrieved_at: '2026-10-18T23:39:01.747986+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/F7J0N2?format=txt&versions=45 retrieved_at: '2026-10-18T23:39:04.235906+00:00' uniprot_release: '2026_03' observations: primary_accession: F7J0N2 alternative_accession: Q2R8L1 sequence_identical: false primary_sequence_length: 1116 alternative_sequence_length: 1301 shared_uniparc_id: null same_taxon: true reference_proteome: UP000059680 proteome_is_reference: true proteome_taxon_matches: true primary_in_reference_proteome: false alternative_in_reference_proteome: true searched_reference_proteomes: - UP000059680 primary_in_any_reference_proteome: false sampled_history_versions: - 12 - 31 - 45 sampled_versions_with_proteome_links: [] current_records: - primaryAccession: F7J0N2 entryType: UniProtKB reviewed (Swiss-Prot) entryAudit: firstPublicDate: '2018-07-18' lastAnnotationUpdateDate: '2026-09-02' lastSequenceUpdateDate: '2011-09-21' entryVersion: 50 sequenceVersion: 1 genes: - geneName: evidences: - evidenceCode: ECO:0000303 source: PubMed id: '21251109' value: RGA5 organism: scientificName: Oryza sativa subsp. japonica taxonId: 39947 sequence: length: 1116 sha256: f79864c9fb3ad737c04b85c3bf506bef3afc804238850ccbd9db54f044078dc6 uniProtKBCrossReferences: [] - primaryAccession: Q2R8L1 entryType: UniProtKB reviewed (Swiss-Prot) entryAudit: firstPublicDate: '2018-07-18' lastAnnotationUpdateDate: '2026-09-02' lastSequenceUpdateDate: '2006-01-24' entryVersion: 144 sequenceVersion: 1 genes: - geneName: evidences: - evidenceCode: ECO:0000312 source: EMBL id: BAK39932.1 value: RGA5 orderedLocusNames: - evidences: - evidenceCode: ECO:0000312 source: EMBL id: BAT13285.1 value: Os11g0225300 - evidences: - evidenceCode: ECO:0000312 source: EMBL id: ABA92208.1 value: LOC_Os11g11810 orfNames: - evidences: - evidenceCode: ECO:0000312 source: EMBL id: EEE51878.1 value: OsJ_33425 organism: scientificName: Oryza sativa subsp. japonica taxonId: 39947 sequence: length: 1301 sha256: 395ed9c6d08b1702d43d7e83fd4e9c00f0dfba7fc73318a3eef0c472ae40cb2c uniProtKBCrossReferences: - database: Gramene id: Os11t0225300-01 properties: - key: ProteinId value: Os11t0225300-01 - key: GeneId value: Os11g0225300 - database: Proteomes id: UP000059680 properties: - key: Component value: Chromosome 11 reference_proteomes: - id: UP000059680 proteomeType: Reference proteome taxonomy: scientificName: Oryza sativa subsp. japonica commonName: Rice taxonId: 39947 mnemonic: ORYSJ unisave_records: - entry_version: 12 url: https://rest.uniprot.org/unisave/F7J0N2?format=txt&versions=12 entry_date: 09-DEC-2015, entry version 12. proteomes: [] reference_proteome_keyword: false record_text: '' - entry_version: 31 url: https://rest.uniprot.org/unisave/F7J0N2?format=txt&versions=31 entry_date: 11-DEC-2019, entry version 31. proteomes: [] reference_proteome_keyword: false record_text: '' - entry_version: 45 url: https://rest.uniprot.org/unisave/F7J0N2?format=txt&versions=45 entry_date: 27-NOV-2024, entry version 45. proteomes: [] reference_proteome_keyword: false record_text: '' archived_sources: - path: genes/ORYSJ/RGA5/RGA5-record-evidence.yaml url: https://github.com/ai4curation/uniprot-orphan-analysis/blob/f6a331cb47f61256ad070bbaa75567094ef64e8a/genes/ORYSJ/RGA5/RGA5-record-evidence.yaml sha256: 24c5950ab6ffb48f59fc9167197d4b19c13fdb7298d5fe18bea3e263d52d94dc excerpts: - start_line: 26 end_line: 38 text: |2 alternative_sequence_length: 1301 shared_uniparc_id: null same_taxon: true reference_proteome: UP000059680 proteome_is_reference: true proteome_taxon_matches: true primary_in_reference_proteome: false alternative_in_reference_proteome: true searched_reference_proteomes: - UP000059680 primary_in_any_reference_proteome: false sampled_history_versions: - 12 - start_line: 1301 end_line: 1310 text: |2 source: EMBL id: BAT13285.1 value: Os11g0225300 - evidences: - evidenceCode: ECO:0000312 source: EMBL id: ABA92208.1 value: LOC_Os11g11810 orfNames: - evidences: - start_line: 1322 end_line: 1326 text: |2 an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. At the opposite of cultivars Aichi asahi and Sasanishiki, the cultivars Nipponbare, Mokoto and Hitomebore don't recognize the effector avirulence protein AVR-Pia from M.oryzae commentType: FUNCTION - start_line: 1999 end_line: 2003 text: |2 value: Os11t0225300-01 - key: GeneId value: Os11g0225300 - database: Gramene id: Os11t0225300-01 - start_line: 2006 end_line: 2010 text: |2 value: Os11t0225300-01 - key: GeneId value: Os11g0225300 - database: KEGG id: dosa:Os11g0225300 - start_line: 2658 end_line: 2663 text: | - entry_version: 12 url: https://rest.uniprot.org/unisave/F7J0N2?format=txt&versions=12 entry_date: 09-DEC-2015, entry version 12. proteomes: [] reference_proteome_keyword: false record_text: | - start_line: 2722 end_line: 2727 text: | - entry_version: 31 url: https://rest.uniprot.org/unisave/F7J0N2?format=txt&versions=31 entry_date: 11-DEC-2019, entry version 31. proteomes: [] reference_proteome_keyword: false record_text: | - start_line: 2971 end_line: 2976 text: | - entry_version: 45 url: https://rest.uniprot.org/unisave/F7J0N2?format=txt&versions=45 entry_date: 27-NOV-2024, entry version 45. proteomes: [] reference_proteome_keyword: false record_text: | - path: genes/ORYSJ/RGA5/RGA5-bioinformatics/reference-counterparts/comparison.yaml url: https://github.com/ai4curation/uniprot-orphan-analysis/blob/f6a331cb47f61256ad070bbaa75567094ef64e8a/genes/ORYSJ/RGA5/RGA5-bioinformatics/reference-counterparts/comparison.yaml sha256: 90835cab5f3d43939bd839282ad28ca59ef3a6b24e7d78b8b825859a70f4985c excerpts: - start_line: 25 end_line: 29 text: |2 - -v - '1' target_sequence_count: 48896 query_sha256: f53ee622b40aa2541e18a7b4dcdfd6afabca519ad31d21c6711bcd9ba827a784 targets_sha256: b38f535a59131e6ea44278e4d553bf418972dbcbda74cb374e7445844dc51963 - start_line: 44 end_line: 48 text: |2 sha256: b38f535a59131e6ea44278e4d553bf418972dbcbda74cb374e7445844dc51963 detailed_alignment_limit: 10 candidate_count: 404 candidates: - accession: Q2R8L1 - start_line: 52 end_line: 64 text: |2 bit_score: 1088.0 global_score: 2768.0 query_length: 1116 target_length: 1301 alignment_columns: 1312 identities: 624 mismatches: 481 gap_columns: 207 identity_percent: 47.561 query_coverage_percent: 99.0143 target_coverage_percent: 84.9347 substitutions: - query_position: 5 comparison: provenance: query_accession: F7J0N2 run_at: '2026-10-18T23:34:03.829907+00:00' biopython_version: '1.85' mmseqs_version: 18-8cc5c command: - mmseqs - easy-search - genes/ORYSJ/RGA5/RGA5-bioinformatics/reference-counterparts/query.fasta - .cache/orphan-curated/UP000059680.fasta - genes/ORYSJ/RGA5/RGA5-bioinformatics/reference-counterparts/search.tsv - genes/ORYSJ/RGA5/RGA5-bioinformatics/reference-counterparts/tmp - --threads - '4' - -s - '7.5' - -e - 1e-5 - --max-seqs - '1000' - --format-output - query,target,pident,alnlen,qstart,qend,qlen,tstart,tend,tlen,evalue,bits - --remove-tmp-files - '1' - -v - '1' target_sequence_count: 48896 query_sha256: f53ee622b40aa2541e18a7b4dcdfd6afabca519ad31d21c6711bcd9ba827a784 targets_sha256: b38f535a59131e6ea44278e4d553bf418972dbcbda74cb374e7445844dc51963 global_alignment: mode: global matrix: BLOSUM62 open_gap: -10 extend_gap: -0.5 terminal_gaps_penalized: true identity_denominator: All global alignment columns, including gaps coverage_denominator: Full query/target length; numerator is paired nongap residues limitation: MMseqs2 heuristic search; no guarantee of exhaustive retrieval or locus equivalence target_source: url: https://rest.uniprot.org/uniprotkb/stream?query=proteome%3AUP000059680&format=fasta retrieved_at: '2026-10-18T23:32:29.836656+00:00' uniprot_release: '2026_03' sequence_count: 48896 sha256: b38f535a59131e6ea44278e4d553bf418972dbcbda74cb374e7445844dc51963 detailed_alignment_limit: 10 candidate_count: 404 retained_alignment_count: 10 candidates: - accession: Q2R8L1 description: sp|Q2R8L1|RGA5S_ORYSJ Disease resistance protein RGA5 OS=Oryza sativa subsp. japonica OX=39947 GN=RGA5 PE=2 SV=1 evalue: 0.0 bit_score: 1088.0 global_score: 2768.0 query_length: 1116 target_length: 1301 alignment_columns: 1312 identities: 624 mismatches: 481 gap_columns: 207 identity_percent: 47.561 query_coverage_percent: 99.0143 target_coverage_percent: 84.9347 - accession: Q2QZJ7 description: tr|Q2QZJ7|Q2QZJ7_ORYSJ Os11g0684100 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0684100 PE=3 SV=1 evalue: 8.261e-204 bit_score: 666.0 global_score: 1789.0 query_length: 1116 target_length: 1200 alignment_columns: 1270 identities: 472 mismatches: 574 gap_columns: 224 identity_percent: 37.1654 query_coverage_percent: 93.7276 target_coverage_percent: 87.1667