snapshot_type: uniprot_record_evidence_extract archive: repository: https://github.com/ai4curation/uniprot-orphan-analysis commit: f6a331cb47f61256ad070bbaa75567094ef64e8a extraction: Original source line ranges with two context lines; not complete records. Structured fields are selected from the same archived snapshots. Sequence values are replaced by lengths and SHA-256 digests. sources: - url: https://rest.uniprot.org/uniprotkb/A9PCL4.json retrieved_at: '2026-10-18T23:26:04.381540+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/uniprotkb/B9ILP9.json retrieved_at: '2026-10-18T23:26:05.030196+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/proteomes/UP000006729.json retrieved_at: '2026-10-18T23:26:06.018590+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/A9PCL4?format=txt&versions=37 retrieved_at: '2026-10-18T23:26:09.228402+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/A9PCL4?format=txt&versions=62 retrieved_at: '2026-10-18T23:26:11.345164+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/A9PCL4?format=txt&versions=77 retrieved_at: '2026-10-18T23:26:13.742570+00:00' uniprot_release: '2026_03' - url: https://www.ebi.ac.uk/ena/browser/api/embl/EF146010 retrieved_at: '2026-10-18T23:26:14.382031+00:00' uniprot_release: null observations: primary_accession: A9PCL4 alternative_accession: B9ILP9 sequence_identical: false primary_sequence_length: 162 alternative_sequence_length: 162 shared_uniparc_id: null same_taxon: true reference_proteome: UP000006729 proteome_is_reference: true proteome_taxon_matches: true primary_in_reference_proteome: false alternative_in_reference_proteome: true sampled_history_versions: - 37 - 62 - 77 sampled_versions_with_proteome_links: [] current_records: - primaryAccession: A9PCL4 entryType: UniProtKB reviewed (Swiss-Prot) entryAudit: firstPublicDate: '2017-08-30' lastAnnotationUpdateDate: '2026-06-10' lastSequenceUpdateDate: '2008-02-05' entryVersion: 78 sequenceVersion: 1 organism: scientificName: Populus trichocarpa taxonId: 3694 sequence: length: 162 sha256: 166bac3fd1fc72f889db4f3ffec64c86feafb16f0699d28f614e78739ef242dd uniProtKBCrossReferences: [] - primaryAccession: B9ILP9 entryType: UniProtKB unreviewed (TrEMBL) entryAudit: firstPublicDate: '2009-03-24' lastAnnotationUpdateDate: '2026-09-02' lastSequenceUpdateDate: '2009-03-24' entryVersion: 91 sequenceVersion: 1 genes: - orfNames: - evidences: - evidenceCode: ECO:0000313 source: EMBL id: PNS93359.1 value: POPTR_018G083500 organism: scientificName: Populus trichocarpa taxonId: 3694 sequence: length: 162 sha256: 1b9c7c674a9cf732ef517986e1f6fdd166ae0353d0f5f903fad0008c2efbe86d uniProtKBCrossReferences: - database: Gramene id: Potri.018G083500.1.v4.1 properties: - key: ProteinId value: Potri.018G083500.1.v4.1 - key: GeneId value: Potri.018G083500.v4.1 - database: Proteomes id: UP000006729 properties: - key: Component value: Chromosome 18 reference_proteomes: - id: UP000006729 proteomeType: Reference proteome taxonomy: scientificName: Populus trichocarpa commonName: Western balsam poplar synonyms: - Populus balsamifera subsp. trichocarpa taxonId: 3694 mnemonic: POPTR unisave_records: - entry_version: 37 url: https://rest.uniprot.org/unisave/A9PCL4?format=txt&versions=37 entry_date: 09-DEC-2015, entry version 37. proteomes: [] reference_proteome_keyword: false record_text: '' - entry_version: 62 url: https://rest.uniprot.org/unisave/A9PCL4?format=txt&versions=62 entry_date: 12-AUG-2020, entry version 62. proteomes: [] reference_proteome_keyword: false record_text: '' - entry_version: 77 url: https://rest.uniprot.org/unisave/A9PCL4?format=txt&versions=77 entry_date: 27-NOV-2024, entry version 77. proteomes: [] reference_proteome_keyword: false record_text: '' archived_sources: - path: genes/POPTR/PRX2/PRX2-record-evidence.yaml url: https://github.com/ai4curation/uniprot-orphan-analysis/blob/f6a331cb47f61256ad070bbaa75567094ef64e8a/genes/POPTR/PRX2/PRX2-record-evidence.yaml sha256: 83603fde9482dfd90904ff9f578b3f56af03cff88461bed05fc43ebd3c6200a1 excerpts: - start_line: 30 end_line: 43 text: |2 shared_uniparc_id: null same_taxon: true reference_proteome: UP000006729 proteome_is_reference: true proteome_taxon_matches: true primary_in_reference_proteome: false alternative_in_reference_proteome: true sampled_history_versions: - 37 - 62 - 77 sampled_versions_with_proteome_links: [] current_records: - entryType: UniProtKB reviewed (Swiss-Prot) - start_line: 2421 end_line: 2425 text: |2 FT source 1..693 FT /organism="Populus trichocarpa" FT /cultivar="383-2499 (Nisqually-1)" FT /mol_type="mRNA" FT /sex="Female" - path: genes/POPTR/PRX2/PRX2-bioinformatics/reference-counterparts/comparison.yaml url: https://github.com/ai4curation/uniprot-orphan-analysis/blob/f6a331cb47f61256ad070bbaa75567094ef64e8a/genes/POPTR/PRX2/PRX2-bioinformatics/reference-counterparts/comparison.yaml sha256: c189c5dcdbb86580639491f4f6164760ac491a504ea1fc1f28da33a37fead8ca excerpts: - start_line: 50 end_line: 62 text: |2 bit_score: 330.0 global_score: 823.0 query_length: 162 target_length: 162 alignment_columns: 162 identities: 161 mismatches: 1 gap_columns: 0 identity_percent: 99.3827 query_coverage_percent: 100.0 target_coverage_percent: 100.0 substitutions: - query_position: 117 comparison: provenance: query_accession: A9PCL4 run_at: '2026-10-18T23:25:23.324537+00:00' biopython_version: '1.85' mmseqs_version: 18-8cc5c command: - mmseqs - easy-search - genes/POPTR/PRX2/PRX2-bioinformatics/reference-counterparts/query.fasta - .cache/orphan-curated/UP000006729.fasta - genes/POPTR/PRX2/PRX2-bioinformatics/reference-counterparts/search.tsv - genes/POPTR/PRX2/PRX2-bioinformatics/reference-counterparts/tmp - --threads - '4' - -s - '7.5' - -e - 1e-5 - --max-seqs - '1000' - --format-output - query,target,pident,alnlen,qstart,qend,qlen,tstart,tend,tlen,evalue,bits - --remove-tmp-files - '1' - -v - '1' target_sequence_count: 77340 query_sha256: 213b399cc2c62e4ce170006a24a265bd8529b590163c7c85cb4973ebcb05bb8e targets_sha256: 988d46285688cd97f593b97011935be87d007e7844c778e1d5c30ba9839dc4c0 global_alignment: mode: global matrix: BLOSUM62 open_gap: -10 extend_gap: -0.5 terminal_gaps_penalized: true identity_denominator: All global alignment columns, including gaps coverage_denominator: Full query/target length; numerator is paired nongap residues limitation: MMseqs2 heuristic search; no guarantee of exhaustive retrieval or locus equivalence target_source: url: https://rest.uniprot.org/uniprotkb/stream?query=proteome%3AUP000006729&format=fasta retrieved_at: '2026-10-18T23:23:27.698811+00:00' uniprot_release: '2026_03' sequence_count: 77340 candidate_count: 5 retained_alignment_count: 5 candidates: - accession: B9ILP9 description: tr|B9ILP9|B9ILP9_POPTR Glutaredoxin-dependent peroxiredoxin OS=Populus trichocarpa OX=3694 GN=POPTR_018G083500 PE=3 SV=1 evalue: 9.356e-104 bit_score: 330.0 global_score: 823.0 query_length: 162 target_length: 162 alignment_columns: 162 identities: 161 mismatches: 1 gap_columns: 0 identity_percent: 99.3827 query_coverage_percent: 100.0 target_coverage_percent: 100.0 - accession: A0A2K2CCD0 description: tr|A0A2K2CCD0|A0A2K2CCD0_POPTR Glutaredoxin-dependent peroxiredoxin OS=Populus trichocarpa OX=3694 GN=POPTR_001G423500 PE=3 SV=1 evalue: 1.823e-100 bit_score: 320.0 global_score: 799.0 query_length: 162 target_length: 162 alignment_columns: 162 identities: 155 mismatches: 7 gap_columns: 0 identity_percent: 95.679 query_coverage_percent: 100.0 target_coverage_percent: 100.0