Alg8 is an inner-membrane processive glycosyltransferase that polymerizes GDP-mannuronate into the mannuronan precursor of alginate. Its cytoplasmic catalytic region works with the c-di-GMP-responsive co-polymerase Alg44 and the alginate export machinery to produce the extracellular polysaccharide.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
| GO:0000271 polysaccharide biosynthetic process | IBA GO_REF:0000033 | MODIFY | Summary: Alg8 synthesizes the specific polysaccharide alginate. Reason: Refine the true general polysaccharide-biosynthesis term to its alginate-biosynthesis descendant, already present in this review. Propagation Review Root cause: TERM SCOPING PROBLEM Failure modes: GRANULARITY MISMATCH Sources checked: PANTHER:PTN000530809 SUPPORTS TRANSFER The propagated broad polysaccharide term is true for Alg8; refine to the directly established alginate pathway. Proposed replacements: alginic acid biosynthetic process Supporting Evidence: PMID:18524915 all of the predicted active site residues in the widely spaced D, DxD, D, LxxRW motif were required for polymerization activity in vivo |
| GO:0005886 plasma membrane | IBA GO_REF:0000033 | ACCEPT | Summary: Alg8 is an inner-membrane glycosyltransferase. Reason: PhoA topology experiments support membrane anchoring and a cytoplasmic catalytic region; the bacterial inner membrane is the plasma membrane. Supporting Evidence: |
| GO:0005886 plasma membrane | IEA GO_REF:0000044 | ACCEPT | Summary: Alg8 is an inner-membrane glycosyltransferase. Reason: PhoA topology experiments support membrane anchoring and a cytoplasmic catalytic region; the bacterial inner membrane is the plasma membrane. Supporting Evidence: |
| GO:0030213 hyaluronan biosynthetic process | IBA GO_REF:0000033 | REMOVE | Summary: Alg8 makes mannuronan, not hyaluronan. Reason: The IBA at PANTHER:PTN000530809 crosses substrate specificity within a glycosyltransferase family. Alg8 uses GDP-mannuronate for alginate; hyaluronan synthesis instead alternates glucuronate and N-acetylglucosamine. Target-specific mutagenesis and polymerization evidence contradict this substrate assignment. This challenges propagation scope, not donor count or the target appearing among donors. Propagation Review Root cause: PROPAGATION BAD Failure modes: FUNCTIONAL DIVERGENCE Sources checked: PANTHER:PTN000530809 UNRESOLVED The proximate ancestral node is identified from seeded WITH/FROM. Its complete PAINT assertion history has not been reconstructed; source-node status remains unresolved. Target-specific primary evidence supports the functional/compartment distinction explained in the review reason, rather than a donor-count or circularity argument. Supporting Evidence: PMID:18524915 all of the predicted active site residues in the widely spaced D, DxD, D, LxxRW motif were required for polymerization activity in vivo |
| GO:0042121 alginic acid biosynthetic process | IEA GO_REF:0000041 | ACCEPT | Summary: Alg8 catalyzes mannuronan polymerization in alginate synthesis. Reason: Alg8 active-site substitutions, loss/complementation genetics and cell-envelope polymerization assays support its processive glycosyltransferase role. These data do not imply isolated Alg8 alone reconstitutes the secretion machinery. Supporting Evidence: PMID:18524915 all of the predicted active site residues in the widely spaced D, DxD, D, LxxRW motif were required for polymerization activity in vivo |
| GO:0042121 alginic acid biosynthetic process | IMP PMID:18524915 Membrane topology and roles of Pseudomonas aeruginosa Alg8 a... | ACCEPT | Summary: Alg8 catalyzes mannuronan polymerization in alginate synthesis. Reason: Alg8 active-site substitutions, loss/complementation genetics and cell-envelope polymerization assays support its processive glycosyltransferase role. These data do not imply isolated Alg8 alone reconstitutes the secretion machinery. PseudoCAP seed assessment (2026-11-05): this row is the PAO1 seed of the GO:0000271 IBD at PTN000530809. Verdict SOUND. The abstract states that alg8 mutants make no polymer and that each predicted active-site residue is required for polymerization in vivo, so the gene's own catalytic role, not only a phenotype, is shown. The IBD also stands on the three mouse hyaluronan synthase seeds. Supporting Evidence: PMID:18524915 all of the predicted active site residues in the widely spaced D, DxD, D, LxxRW motif were required for polymerization activity in vivo |
| GO:0047643 alginate synthase activity | IEA GO_REF:0000120 | ACCEPT | Summary: Alg8 catalyzes mannuronan polymerization in alginate synthesis. Reason: Alg8 active-site substitutions, loss/complementation genetics and cell-envelope polymerization assays support its processive glycosyltransferase role. These data do not imply isolated Alg8 alone reconstitutes the secretion machinery. Supporting Evidence: PMID:18524915 all of the predicted active site residues in the widely spaced D, DxD, D, LxxRW motif were required for polymerization activity in vivo |
| GO:0050501 hyaluronan synthase activity | IBA GO_REF:0000033 | REMOVE | Summary: Alg8 makes mannuronan, not hyaluronan. Reason: The IBA at PANTHER:PTN000530809 crosses substrate specificity within a glycosyltransferase family. Alg8 uses GDP-mannuronate for alginate; hyaluronan synthesis instead alternates glucuronate and N-acetylglucosamine. Target-specific mutagenesis and polymerization evidence contradict this substrate assignment. This challenges propagation scope, not donor count or the target appearing among donors. Propagation Review Root cause: PROPAGATION BAD Failure modes: FUNCTIONAL DIVERGENCE Sources checked: PANTHER:PTN000530809 UNRESOLVED The proximate ancestral node is identified from seeded WITH/FROM. Its complete PAINT assertion history has not been reconstructed; source-node status remains unresolved. Target-specific primary evidence supports the functional/compartment distinction explained in the review reason, rather than a donor-count or circularity argument. Supporting Evidence: PMID:18524915 all of the predicted active site residues in the widely spaced D, DxD, D, LxxRW motif were required for polymerization activity in vivo |
| GO:0085029 extracellular matrix assembly | IBA GO_REF:0000033 | KEEP AS NON CORE | Summary: Alg8 constructs the alginate matrix polymer and contributes to architecture of alginate-producing biofilms. Reason: Alg8 directly polymerizes a structural extracellular-matrix polysaccharide. In the native P. aeruginosa PDO300 background, alg8 complementation restores highly structured biofilms relative to the nonmucoid deletion control (PMID:25968647, Fig. 9 and Table 2). The matrix-assembly role is therefore supported by target-specific architecture measurements together with demonstrated polymer synthesis, rather than necessity alone. Retain this conditional biofilm role as non-core; alginate polymerization remains the core activity. This evidence supports the broad biological claim independently of the unresolved PAINT node placement. GO:0085029 concerns aggregation, arrangement and bonding of extracellular matrix without a mammalian restriction. The architecture data and polymer-building mechanism support this conditional matrix role. GO:0044010 describes the distinct whole-biofilm process rather than a more specific replacement for this assembly claim; no additional biofilm annotation is proposed. Supporting Evidence: PMID:18524915 all of the predicted active site residues in the widely spaced D, DxD, D, LxxRW motif were required for polymerization activity in vivo PMID:25968647 The PDO300Ξalg8(pBBR1MCS-5:alg8) and PDO300Ξalg44(pBBR1MCS-5:alg44) strains established heterogeneous highly structured biofilms (Fig.Β 9). |
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