alg8

UniProt ID: Q52463
Organism: Pseudomonas aeruginosa PAO1
Review Status: COMPLETE
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Gene Description

Alg8 is an inner-membrane processive glycosyltransferase that polymerizes GDP-mannuronate into the mannuronan precursor of alginate. Its cytoplasmic catalytic region works with the c-di-GMP-responsive co-polymerase Alg44 and the alginate export machinery to produce the extracellular polysaccharide.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0000271 polysaccharide biosynthetic process
IBA
GO_REF:0000033
MODIFY
Summary: Alg8 synthesizes the specific polysaccharide alginate.
Reason: Refine the true general polysaccharide-biosynthesis term to its alginate-biosynthesis descendant, already present in this review.
Propagation Review
Root cause: TERM SCOPING PROBLEM
Failure modes: GRANULARITY MISMATCH
Sources checked:
PANTHER:PTN000530809 SUPPORTS TRANSFER
The propagated broad polysaccharide term is true for Alg8; refine to the directly established alginate pathway.
Supporting Evidence:
PMID:18524915
all of the predicted active site residues in the widely spaced D, DxD, D, LxxRW motif were required for polymerization activity in vivo
GO:0005886 plasma membrane
IBA
GO_REF:0000033
ACCEPT
Summary: Alg8 is an inner-membrane glycosyltransferase.
Reason: PhoA topology experiments support membrane anchoring and a cytoplasmic catalytic region; the bacterial inner membrane is the plasma membrane.
Supporting Evidence:
GO:0005886 plasma membrane
IEA
GO_REF:0000044
ACCEPT
Summary: Alg8 is an inner-membrane glycosyltransferase.
Reason: PhoA topology experiments support membrane anchoring and a cytoplasmic catalytic region; the bacterial inner membrane is the plasma membrane.
Supporting Evidence:
GO:0030213 hyaluronan biosynthetic process
IBA
GO_REF:0000033
REMOVE
Summary: Alg8 makes mannuronan, not hyaluronan.
Reason: The IBA at PANTHER:PTN000530809 crosses substrate specificity within a glycosyltransferase family. Alg8 uses GDP-mannuronate for alginate; hyaluronan synthesis instead alternates glucuronate and N-acetylglucosamine. Target-specific mutagenesis and polymerization evidence contradict this substrate assignment. This challenges propagation scope, not donor count or the target appearing among donors.
Propagation Review
Root cause: PROPAGATION BAD
Failure modes: FUNCTIONAL DIVERGENCE
Sources checked:
PANTHER:PTN000530809 UNRESOLVED
The proximate ancestral node is identified from seeded WITH/FROM. Its complete PAINT assertion history has not been reconstructed; source-node status remains unresolved. Target-specific primary evidence supports the functional/compartment distinction explained in the review reason, rather than a donor-count or circularity argument.
Supporting Evidence:
PMID:18524915
all of the predicted active site residues in the widely spaced D, DxD, D, LxxRW motif were required for polymerization activity in vivo
GO:0042121 alginic acid biosynthetic process
IEA
GO_REF:0000041
ACCEPT
Summary: Alg8 catalyzes mannuronan polymerization in alginate synthesis.
Reason: Alg8 active-site substitutions, loss/complementation genetics and cell-envelope polymerization assays support its processive glycosyltransferase role. These data do not imply isolated Alg8 alone reconstitutes the secretion machinery.
Supporting Evidence:
PMID:18524915
all of the predicted active site residues in the widely spaced D, DxD, D, LxxRW motif were required for polymerization activity in vivo
GO:0042121 alginic acid biosynthetic process
IMP
PMID:18524915
Membrane topology and roles of Pseudomonas aeruginosa Alg8 a...
ACCEPT
Summary: Alg8 catalyzes mannuronan polymerization in alginate synthesis.
Reason: Alg8 active-site substitutions, loss/complementation genetics and cell-envelope polymerization assays support its processive glycosyltransferase role. These data do not imply isolated Alg8 alone reconstitutes the secretion machinery. PseudoCAP seed assessment (2026-11-05): this row is the PAO1 seed of the GO:0000271 IBD at PTN000530809. Verdict SOUND. The abstract states that alg8 mutants make no polymer and that each predicted active-site residue is required for polymerization in vivo, so the gene's own catalytic role, not only a phenotype, is shown. The IBD also stands on the three mouse hyaluronan synthase seeds.
Supporting Evidence:
PMID:18524915
all of the predicted active site residues in the widely spaced D, DxD, D, LxxRW motif were required for polymerization activity in vivo
GO:0047643 alginate synthase activity
IEA
GO_REF:0000120
ACCEPT
Summary: Alg8 catalyzes mannuronan polymerization in alginate synthesis.
Reason: Alg8 active-site substitutions, loss/complementation genetics and cell-envelope polymerization assays support its processive glycosyltransferase role. These data do not imply isolated Alg8 alone reconstitutes the secretion machinery.
Supporting Evidence:
PMID:18524915
all of the predicted active site residues in the widely spaced D, DxD, D, LxxRW motif were required for polymerization activity in vivo
GO:0050501 hyaluronan synthase activity
IBA
GO_REF:0000033
REMOVE
Summary: Alg8 makes mannuronan, not hyaluronan.
Reason: The IBA at PANTHER:PTN000530809 crosses substrate specificity within a glycosyltransferase family. Alg8 uses GDP-mannuronate for alginate; hyaluronan synthesis instead alternates glucuronate and N-acetylglucosamine. Target-specific mutagenesis and polymerization evidence contradict this substrate assignment. This challenges propagation scope, not donor count or the target appearing among donors.
Propagation Review
Root cause: PROPAGATION BAD
Failure modes: FUNCTIONAL DIVERGENCE
Sources checked:
PANTHER:PTN000530809 UNRESOLVED
The proximate ancestral node is identified from seeded WITH/FROM. Its complete PAINT assertion history has not been reconstructed; source-node status remains unresolved. Target-specific primary evidence supports the functional/compartment distinction explained in the review reason, rather than a donor-count or circularity argument.
Supporting Evidence:
PMID:18524915
all of the predicted active site residues in the widely spaced D, DxD, D, LxxRW motif were required for polymerization activity in vivo
GO:0085029 extracellular matrix assembly
IBA
GO_REF:0000033
KEEP AS NON CORE
Summary: Alg8 constructs the alginate matrix polymer and contributes to architecture of alginate-producing biofilms.
Reason: Alg8 directly polymerizes a structural extracellular-matrix polysaccharide. In the native P. aeruginosa PDO300 background, alg8 complementation restores highly structured biofilms relative to the nonmucoid deletion control (PMID:25968647, Fig. 9 and Table 2). The matrix-assembly role is therefore supported by target-specific architecture measurements together with demonstrated polymer synthesis, rather than necessity alone. Retain this conditional biofilm role as non-core; alginate polymerization remains the core activity. This evidence supports the broad biological claim independently of the unresolved PAINT node placement. GO:0085029 concerns aggregation, arrangement and bonding of extracellular matrix without a mammalian restriction. The architecture data and polymer-building mechanism support this conditional matrix role. GO:0044010 describes the distinct whole-biofilm process rather than a more specific replacement for this assembly claim; no additional biofilm annotation is proposed.
Supporting Evidence:
PMID:18524915
all of the predicted active site residues in the widely spaced D, DxD, D, LxxRW motif were required for polymerization activity in vivo
PMID:25968647
The PDO300Ξ”alg8(pBBR1MCS-5:alg8) and PDO300Ξ”alg44(pBBR1MCS-5:alg44) strains established heterogeneous highly structured biofilms (Fig.Β 9).

Core Functions

Polymerizes GDP-mannuronate into mannuronan at the inner membrane as the catalytic glycosyltransferase of the alginate-production machinery.

Molecular Function:
alginate synthase activity
Cellular Locations:
Supporting Evidence:
  • PMID:18524915
    all of the predicted active site residues in the widely spaced D, DxD, D, LxxRW motif were required for polymerization activity in vivo
  • PMID:16391057

References

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Notes

(alg8-notes.md)

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