DnaN is the homodimeric beta sliding clamp of bacterial DNA polymerase III. The clamp forms a ring around duplex DNA after ATP-dependent loading by the clamp-loader complex and tethers replicative polymerases to DNA, thereby supporting processive chromosome synthesis.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
| GO:0003677 DNA binding | IEA GO_REF:0000002 | ACCEPT | Summary: The beta clamp directly encircles and interacts with DNA. Reason: The beta clamp directly encircles and interacts with DNA. DNA binding is intrinsic to clamp function rather than a peripheral consequence. Supporting Evidence: file:PSEPK/dnaN/dnaN-uniprot.txt Belongs to the beta sliding clamp family. PMID:15611049 Efficient primer elongation requires the presence of alphaepsilon, beta, and tau(3)deltadelta'. |
| GO:0003887 DNA-directed DNA polymerase activity | IEA GO_REF:0000002 | REMOVE | Summary: The clamp is a non-catalytic processivity factor; polymerase chemistry is performed by DnaE. Reason: The clamp is a non-catalytic processivity factor; polymerase chemistry is performed by DnaE. Pseudomonas reconstitution separates beta from the alpha-epsilon catalytic complex. Supporting Evidence: file:PSEPK/dnaN/dnaN-uniprot.txt Belongs to the beta sliding clamp family. PMID:15611049 Efficient primer elongation requires the presence of alphaepsilon, beta, and tau(3)deltadelta'. |
| GO:0005737 cytoplasm | IEA GO_REF:0000044 | ACCEPT | Summary: The beta clamp operates on bacterial chromosome DNA in the cytoplasm. Reason: The beta clamp operates on bacterial chromosome DNA in the cytoplasm. The ISS donor supports a conserved location rather than target-specific imaging. Supporting Evidence: file:PSEPK/dnaN/dnaN-uniprot.txt Belongs to the beta sliding clamp family. PMID:15611049 Efficient primer elongation requires the presence of alphaepsilon, beta, and tau(3)deltadelta'. |
| GO:0006260 DNA replication | IEA GO_REF:0000002 | MODIFY | Summary: The direct processivity contribution supports strand elongation during replication, a descendant already present. Reason: The direct processivity contribution supports strand elongation during replication, a descendant already present. Proposed replacements: DNA strand elongation involved in DNA replication Supporting Evidence: file:PSEPK/dnaN/dnaN-uniprot.txt Belongs to the beta sliding clamp family. PMID:15611049 Efficient primer elongation requires the presence of alphaepsilon, beta, and tau(3)deltadelta'. |
| GO:0006271 DNA strand elongation involved in DNA replication | IEA GO_REF:0000118 | ACCEPT | Summary: The clamp physically tethers polymerase to its DNA template, thereby performing structural work required for processive strand elongation. Reason: The clamp physically tethers polymerase to its DNA template, thereby performing structural work required for processive strand elongation. Supporting Evidence: file:PSEPK/dnaN/dnaN-uniprot.txt Belongs to the beta sliding clamp family. PMID:15611049 Efficient primer elongation requires the presence of alphaepsilon, beta, and tau(3)deltadelta'. |
| GO:0008408 3'-5' exonuclease activity | IEA GO_REF:0000002 | REMOVE | Summary: The beta clamp lacks the DnaQ proofreading catalytic role; the editing activity of the holoenzyme must not be assigned to this processivity subunit. Reason: The beta clamp lacks the DnaQ proofreading catalytic role; the editing activity of the holoenzyme must not be assigned to this processivity subunit. Supporting Evidence: file:PSEPK/dnaN/dnaN-uniprot.txt Belongs to the beta sliding clamp family. PMID:15611049 Efficient primer elongation requires the presence of alphaepsilon, beta, and tau(3)deltadelta'. |
| GO:0009360 DNA polymerase III complex | IEA GO_REF:0000002 | ACCEPT | Summary: The beta clamp is a polymerase III holoenzyme component, corroborated by Pseudomonas replicase reconstitution. Reason: The beta clamp is a polymerase III holoenzyme component, corroborated by Pseudomonas replicase reconstitution. Supporting Evidence: file:PSEPK/dnaN/dnaN-uniprot.txt Belongs to the beta sliding clamp family. PMID:15611049 Efficient primer elongation requires the presence of alphaepsilon, beta, and tau(3)deltadelta'. |
| GO:0042802 identical protein binding | IEA GO_REF:0000117 | ACCEPT | Summary: Head-to-tail homodimerization forms the functional DNA-encircling ring. Reason: Head-to-tail homodimerization forms the functional DNA-encircling ring. Identical-protein binding therefore describes a specific core assembly property; it is not the uninformative bare GO0005515 term. Supporting Evidence: file:PSEPK/dnaN/dnaN-uniprot.txt Belongs to the beta sliding clamp family. PMID:15611049 Efficient primer elongation requires the presence of alphaepsilon, beta, and tau(3)deltadelta'. |
| GO:0071897 DNA biosynthetic process | IEA GO_REF:0000108 | ACCEPT | Summary: The clamp contributes the DNA-tethering scaffold that enables processive DNA production. Reason: The clamp contributes the DNA-tethering scaffold that enables processive DNA production. Its non-catalytic status does not exclude structural participation in biosynthesis, and no nonexistent ancestor relationship with replication is assumed. Supporting Evidence: file:PSEPK/dnaN/dnaN-uniprot.txt Belongs to the beta sliding clamp family. PMID:15611049 Efficient primer elongation requires the presence of alphaepsilon, beta, and tau(3)deltadelta'. |
| GO:0005737 cytoplasm | ISS GO_REF:0000024 | ACCEPT | Summary: The beta clamp operates on bacterial chromosome DNA in the cytoplasm. Reason: The beta clamp operates on bacterial chromosome DNA in the cytoplasm. The ISS donor supports a conserved location rather than target-specific imaging. Supporting Evidence: file:PSEPK/dnaN/dnaN-uniprot.txt Belongs to the beta sliding clamp family. PMID:15611049 Efficient primer elongation requires the presence of alphaepsilon, beta, and tau(3)deltadelta'. |
| GO:0030337 DNA polymerase processivity factor activity | IEA file:PSEPK/dnaN/dnaN-uniprot.txt | NEW | Summary: Retain the inherited proposal and original payload. Reason: Retain the inherited proposal and original payload. The target belongs to the beta-clamp family, and Pseudomonas reconstitution directly separates the beta processivity factor from polymerase and loader. The processivity activity adds a distinct regulator function, not polymerization or nuclease chemistry. Supporting Evidence: file:PSEPK/dnaN/dnaN-uniprot.txt Belongs to the beta sliding clamp family. PMID:15611049 Efficient primer elongation requires the presence of alphaepsilon, beta, and tau(3)deltadelta'. |
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