fliF

UniProt ID: Q88ET4
Organism: Pseudomonas putida KT2440
Review Status: COMPLETE
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Gene Description

FliF is the integral membrane structural subunit that oligomerizes to form the flagellar MS ring. The ring anchors the export apparatus and cytoplasmic switch complex during basal-body assembly; FliF is not itself a motor enzyme.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0003774 cytoskeletal motor activity
IEA
GO_REF:0000002
MODIFY
Summary: FliF contributes to the proton-driven flagellar motor through the assembled rotor.
Reason: Current GO:0003774 explicitly includes flagellar rotation powered by an electrochemical proton gradient, and GO:0140605 is its is_a descendant. The replacement is therefore a genuine refinement to proton-motive-force-driven motor activity. FliF contributes the assembled MS-ring rotor structure; this does not assert autonomous proton translocation or torque generation by isolated FliF. The comparative structural evidence is transferred to the KT2440 homolog, not a target-specific motor assay.
Supporting Evidence:
PMID:39766194
The MS-ring serves not only as a part of the rotor of the flagellar motor but also as a structural template for flagellar assembly
GO:0005886 plasma membrane
IEA
GO_REF:0000044
ACCEPT
Summary: The FliF MS ring is embedded in the cytoplasmic membrane.
Reason: Correct membrane localization.
GO:0009425 bacterial-type flagellum basal body
IEA
GO_REF:0000044
MODIFY
Summary: FliF occupies the bacterial-type flagellum basal body, MS ring.
Reason: The broader location is sound but the conserved component architecture supports this specific flagellar substructure. This is a target-family inference from comparative structures, not a KT2440 localization experiment.
Supporting Evidence:
PMID:34244518
The MS ring is a transmembrane protein complex made of FliF and is the base for flagellar structure, assembly and function.
GO:0009431 bacterial-type flagellum basal body, MS ring
IEA
GO_REF:0000002
ACCEPT
Summary: FliF oligomers form the MS ring.
Reason: This is the most specific and informative component annotation.
GO:0071973 bacterial-type flagellum-dependent cell motility
IEA
GO_REF:0000002
ACCEPT
Summary: FliF is a structural part of the rotating flagellar apparatus.
Reason: The subunit contributes the physical rotor or torque-transmitting rod used during motility. This is direct structural participation, inferred from conserved architecture; exact target kinetics and surface behaviors are not inferred.
Supporting Evidence:
PMID:34244518
The MS ring is a transmembrane protein complex made of FliF and is the base for flagellar structure, assembly and function.
GO:0005198 structural molecule activity
ISS
file:PSEPK/fliF/fliF-uniprot.txt
NEW
Summary: FliF oligomerizes to form the structural MS ring of the flagellar basal body.
Reason: Structural molecule activity captures the direct molecular role of this ring-forming subunit. Membership is from family classification: Q88ET4 matches the NCBIfam TIGR00206 FliF model and the curated PIRNR FliF family assignment. The structural role is ortholog evidence from Salmonella, where the MS ring is a complex made of FliF that is the base of flagellar structure (PMID:34244518); it has not been tested for KT2440 FliF.
Supporting Evidence:
file:PSEPK/fliF/fliF-uniprot.txt
DR NCBIfam; TIGR00206; fliF; 1.
PMID:34244518
The MS ring is a transmembrane protein complex made of FliF and is the base for flagellar structure, assembly and function.
GO:0044780 bacterial-type flagellum assembly
ISS
file:PSEPK/fliF/fliF-uniprot.txt
NEW
Summary: FliF forms the MS ring during bacterial flagellum assembly.
Reason: The structural role is a direct required step in basal-body assembly: FliF subunits themselves assemble into the MS ring, and in Salmonella conserved FliF residues are needed for MS-ring formation and for assembly of the export apparatus and rod within it (PMID:34244518). This is ortholog evidence transferred by family membership (NCBIfam TIGR00206 fliF), not a KT2440 experiment.
Supporting Evidence:
file:PSEPK/fliF/fliF-uniprot.txt
DR NCBIfam; TIGR00206; fliF; 1.
PMID:34244518
conserved residues of FliF are responsible not only for MS ring formation by stabilizing intersubunit interactions but also for the assembly of the type III protein export apparatus and the rod within the MS ring.

Core Functions

Structural MS-ring subunit that anchors the flagellar basal body, export gate, and switch complex.

Supporting Evidence:
  • PMID:34244518
    The bacterial flagellar MS ring is a transmembrane complex acting as the core of the flagellar motor and template for flagellar assembly.

References

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Deep Research

OpenScientist

(fliF-deep-research-openscientist.md)

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πŸ“š Additional Documentation

Notes

(fliF-notes.md)

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