GatB is the ATP-dependent synthetase subunit of the GatABC tRNA-dependent amidotransferase in Pseudomonas putida KT2440. In the heterotrimer it activates the tRNA-bound glutamyl or aspartyl side chain for ammonia transfer, enabling formation of Gln-tRNA(Gln) or Asn-tRNA(Asn).
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
| GO:0003824 catalytic activity | IEA GO_REF:0000002 | MARK AS OVER ANNOTATED | Summary: Generic catalytic activity is true but uninformative beside the two separately annotated GatABC synthase activities. Reason: GO:0050566 and GO:0050567 already capture the Asn- and Gln-tRNA transamidation reactions specifically. Supporting Evidence: file:PSEPK/gatB/gatB-uniprot.txt Reaction=L-glutamyl-tRNA(Gln) + L-glutamine + ATP + H2O |
| GO:0006412 translation | IEA GO_REF:0000104 | KEEP AS NON CORE | Summary: GatB supports translation, but its direct role is tRNA transamidation. Reason: Translation is a downstream context broader than either GatABC charging reaction. Supporting Evidence: file:PSEPK/gatB/gatB-uniprot.txt Allows the formation of correctly charged Asn-tRNA(Asn) or |
| GO:0016874 ligase activity | IEA GO_REF:0000120 | MARK AS OVER ANNOTATED | Summary: Generic ligase activity is correct but uninformative beside the two separately annotated GatABC synthase activities. Reason: GO:0050566 and GO:0050567 already capture ATP-dependent ligation on the two tRNA-bound substrates. Supporting Evidence: file:PSEPK/gatB/gatB-uniprot.txt Reaction=L-glutamyl-tRNA(Gln) + L-glutamine + ATP + H2O |
| GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEA GO_REF:0000002 | MARK AS OVER ANNOTATED | Summary: The broad amido-N-donor ligase term is true but uninformative beside the two tRNA-specific activities. Reason: GO:0050566 and GO:0050567 already capture the exact Asn-tRNA(Asn) and Gln-tRNA(Gln) products. Supporting Evidence: file:PSEPK/gatB/gatB-uniprot.txt Reaction=L-glutamyl-tRNA(Gln) + L-glutamine + ATP + H2O |
| GO:0030956 glutamyl-tRNA(Gln) amidotransferase complex | IEA GO_REF:0000104 | ACCEPT | Summary: GatB is a required subunit of heterotrimeric GatABC. Reason: UniProt explicitly specifies the A/B/C heterotrimer. Supporting Evidence: file:PSEPK/gatB/gatB-uniprot.txt SUBUNIT: Heterotrimer of A, B and C subunits. |
| GO:0050566 asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity | IEA GO_REF:0000120 | MARK AS OVER ANNOTATED | Summary: GatABC can form Asn-tRNA(Asn) by transamidating Asp-tRNA(Asn). Reason: The reviewed entry includes the exact asparaginyl-tRNA synthase reaction, but GatB contributes to rather than independently enables the whole-complex activity. Supporting Evidence: file:PSEPK/gatB/gatB-uniprot.txt Reaction=L-aspartyl-tRNA(Asn) + L-glutamine + ATP + H2O |
| GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity | IEA GO_REF:0000120 | MARK AS OVER ANNOTATED | Summary: GatABC can form Gln-tRNA(Gln) by transamidating Glu-tRNA(Gln). Reason: The reviewed entry includes the exact glutaminyl-tRNA synthase reaction, but GatB contributes to rather than independently enables the whole-complex activity. Supporting Evidence: file:PSEPK/gatB/gatB-uniprot.txt Reaction=L-glutamyl-tRNA(Gln) + L-glutamine + ATP + H2O |
| GO:0070681 glutaminyl-tRNAGln biosynthesis via transamidation | IEA GO_REF:0000120 | UNDECIDED | Summary: GatABC has the reaction capacity, but this route is not established in KT2440. Reason: The reaction requires Glu-tRNA(Gln), but KT2440 has direct GlnRS and no evidence establishes that its GltX supplies this misacylated precursor. The characterized Pseudomonas aeruginosa system instead uses discriminating GluRS and direct GlnRS. Supporting Evidence: file:PSEPK/gatB/gatB-uniprot.txt Reaction=L-glutamyl-tRNA(Gln) + L-glutamine + ATP + H2O PMID:14729703 GluRS is discriminating in the sense that it does not glutamylate tRNA(Gln) |
| GO:0043039 tRNA aminoacylation | ISS PMID:14729703 Direct glutaminyl-tRNA biosynthesis and indirect asparaginyl... | NEW | Summary: GatB participates directly in indirect Asn-tRNA(Asn) formation from Asp-tRNA(Asn). Reason: The KT2440 GatB record contains the exact asparaginyl-tRNA synthase reaction, and the corresponding ND-AspRS/GatABC route is experimentally established in Pseudomonas aeruginosa. This row originally proposed GO:0070680 asparaginyl-tRNAAsn biosynthesis via transamidation, which is obsolete in the GO release 2026-07-26. Its replaced_by, GO:0070981 L-asparagine biosynthetic process, is not used because the indirect route ends at Asn-tRNA(Asn), not free asparagine, so GO:0043039 tRNA aminoacylation (the is_a parent of the obsolete term) is asserted instead. The GOA descendant GO:0070681 (glutaminyl-tRNAGln biosynthesis via transamidation) does not make this row redundant: that row is UNDECIDED here because the Gln transamidation route is not established in KT2440, whereas this row rests on the Asn route. Supporting Evidence: file:PSEPK/gatB/gatB-uniprot.txt Reaction=L-aspartyl-tRNA(Asn) + L-glutamine + ATP + H2O PMID:14729703 The essential role of AdT in the formation of Asn-tRNA in P. aeruginosa |
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