hemC

UniProt ID: Q88RE5
Organism: Pseudomonas putida KT2440
Review Status: COMPLETE
Aliases:
PP_0186
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Gene Description

HemC is the cytoplasmic hydroxymethylbilane synthase, also called porphobilinogen deaminase. It uses a covalently bound dipyrromethane cofactor to polymerize four porphobilinogen molecules into the linear tetrapyrrole hydroxymethylbilane, which HemD cyclizes to uroporphyrinogen III.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0004418 hydroxymethylbilane synthase activity
IEA
GO_REF:0000120
ACCEPT
Summary: This is the specific core catalytic function of HemC.
Reason: UniProt assigns EC 2.5.1.61 and describes tetrapolymerization of porphobilinogen into hydroxymethylbilane.
Supporting Evidence:
file:PSEPK/hemC/hemC-uniprot.txt
Tetrapolymerization of the monopyrrole PBG into the
GO:0005737 cytoplasm
IEA
GO_REF:0000120
ACCEPT
Summary: Cytoplasmic localization is consistent with this soluble bacterial enzyme.
Reason: HemC belongs to the HMBS (porphobilinogen deaminase) family (HAMAP MF_00260, Pfam Porphobil_deam), whose bacterial members are soluble cytoplasmic enzymes. The UniProt record has no TRANSMEM, SIGNAL or lipoprotein feature and no CC SUBCELLULAR LOCATION line (checked and empty), so there is no export or membrane signal; cytoplasm rests on that absence plus family membership, not on a localization assay.
Supporting Evidence:
file:PSEPK/hemC/hemC-uniprot.txt
DR HAMAP; MF_00260; Porphobil_deam; 1.
file:PSEPK/hemC/hemC-uniprot.txt
SIMILARITY: Belongs to the HMBS family.
GO:0006783 heme biosynthetic process
IEA
GO_REF:0000120
ACCEPT
Summary: HemC is an obligatory middle enzyme in the protoporphyrin route to heme b.
Reason: The HemC reaction generates the linear tetrapyrrole precursor required for uroporphyrinogen III and all downstream heme-b intermediates.
Supporting Evidence:
file:PSEPK/hemC/hemC-uniprot.txt
PATHWAY: Porphyrin-containing compound metabolism; protoporphyrin-IX
GO:0033014 tetrapyrrole biosynthetic process
IEA
GO_REF:0000002
ACCEPT
Summary: The annotation is true; HemC builds the first linear tetrapyrrole of the shared trunk.
Reason: HemC polymerizes porphobilinogen into hydroxymethylbilane, a step of the tetrapyrrole trunk that feeds heme, siroheme and cobalamin, so the tetrapyrrole biosynthetic process term is accurate. This review earlier proposed GO:0006780 uroporphyrinogen III biosynthetic process instead; that was withdrawn for consistency with the E. coli hemC, human HMBS and yeast HEM3 reviews, which accept GO:0033014 and reserve GO:0006780 for the cyclization step that GO annotates to uroporphyrinogen-III synthase.
Supporting Evidence:
file:PSEPK/hemC/hemC-uniprot.txt
Tetrapolymerization of the monopyrrole PBG into the

Core Functions

Polymerizes four porphobilinogen molecules into hydroxymethylbilane for uroporphyrinogen III and downstream heme-b synthesis.

Cellular Locations:
Supporting Evidence:
  • file:PSEPK/hemC/hemC-uniprot.txt
    Tetrapolymerization of the monopyrrole PBG into the

References

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Suggested Questions for Experts

Q: Is HemC abundance coordinated with the adjacent hemD locus in KT2440?

Suggested Experiments

Experiment: Quantify porphobilinogen and downstream tetrapyrroles after conditional hemC depletion and complementation.

Hypothesis: HemC supplies hydroxymethylbilane for the principal heme-b pathway.

Deep Research

OpenScientist

(hemC-deep-research-openscientist.md)

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πŸ“š Additional Documentation

Notes

(hemC-notes.md)

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