hisC

UniProt ID: Q88P86
Organism: Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
Review Status: DRAFT
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Gene Description

Histidinol-phosphate aminotransferase (HisC; EC 2.6.1.9), a cytoplasmic pyridoxal-5'-phosphate (PLP)-dependent class-II aminotransferase that catalyzes the seventh step of L-histidine biosynthesis. It transfers an amino group from L-glutamate to imidazole-acetol phosphate (3-(imidazol-4-yl)-2-oxopropyl phosphate), producing L-histidinol phosphate and 2-oxoglutarate. The enzyme functions as a homodimer with active sites at the dimer interface; PLP is covalently bound as an internal aldimine to an active-site lysine (Lys210 in this protein) and catalysis proceeds via a ping-pong mechanism through a pyridoxamine-5'-phosphate intermediate. In Pseudomonas putida KT2440 the gene (PP_0967) lies within a histidine-biosynthesis gene cluster. Aromatic-amino-acid transamination is documented for some HisC orthologs but has not been demonstrated for the KT2440 protein.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0000105 L-histidine biosynthetic process
IEA
GO_REF:0000120
ACCEPT
Summary: HisC catalyzes the seventh step of histidine biosynthesis; this BP term is well supported by family/HAMAP-rule assignment, the UniProt pathway annotation, and operon context in KT2440.
Reason: Core biological process for this enzyme. The histidinol-phosphate aminotransferase function places it squarely in the L-histidine biosynthetic pathway (UniPathway UPA00031; HAMAP-Rule MF_01023).
Supporting Evidence:
file:PSEPK/hisC/hisC-deep-research-openscientist.md
catalyzes the **seventh step of de novo L-histidine biosynthesis**
GO:0004400 L-histidinol-phosphate:2-oxoglutarate transaminase activity
IEA
GO_REF:0000120
ACCEPT
Summary: This is the specific molecular function of HisC (EC 2.6.1.9), transaminating L-histidinol phosphate with 2-oxoglutarate/L-glutamate. The UniProt CATALYTIC ACTIVITY block and HAMAP rule directly support this.
Reason: Represents the core molecular function. Strongly supported by family assignment (HisP_aminotrans subfamily, TIGR01141 hisC), Rhea:23744, and EC 2.6.1.9.
Supporting Evidence:
file:PSEPK/hisC/hisC-deep-research-openscientist.md
*hisC* encodes **histidinol-phosphate aminotransferase (HisC, EC 2.6.1.9)**
GO:0016740 transferase activity
IEA
GO_REF:0000002
MARK AS OVER ANNOTATED
Summary: A high-level parent of the specific aminotransferase activity already annotated (GO:0004400). It is correct but uninformative given the more precise term.
Reason: Redundant generic ancestor of GO:0004400; adds no information beyond the specific transaminase MF term.
GO:0030170 pyridoxal phosphate binding
IEA
GO_REF:0000002
KEEP AS NON CORE
Summary: HisC is a PLP-dependent enzyme that covalently binds pyridoxal 5'-phosphate as an internal aldimine at the active-site lysine (MOD_RES 210 in this entry). Well supported by the COFACTOR annotation and conserved PLP-lysine motif.
Reason: PLP binding is an essential, well-supported cofactor interaction, but the substrate-specific transaminase activity is the defining molecular function. The PLP-lysine internal aldimine and ping-pong mechanism are documented for HisC homologs (see hisC-deep-research-falcon.md).
GO:0140385 amino acid transaminase activity
IEA
GO_REF:0000117
MARK AS OVER ANNOTATED
Summary: A broad parent term covering aminotransferase activity on amino acid substrates. Correct but less specific than GO:0004400, which is already annotated.
Reason: Generic ancestor of the specific histidinol-phosphate transaminase activity; the more precise term GO:0004400 already captures this function.

Core Functions

Catalyzes the PLP-dependent transamination of imidazole-acetol phosphate to L-histidinol phosphate (using L-glutamate as amino donor), the seventh step of L-histidine biosynthesis.

Supporting Evidence:
  • file:PSEPK/hisC/hisC-deep-research-falcon.md
    KT2440 histidine-biosynthesis genes PP0965-PP0967 are annotated as the hisGDC cluster, placing PP_0967 as hisC within histidine biosynthesis.
  • file:PSEPK/hisC/hisC-deep-research-openscientist.md
    transfers the Ξ±-amino group of **L-glutamate onto imidazole-acetol phosphate (3-(imidazol-4-yl)-2-oxopropyl phosphate)** to yield **L-histidinol phosphate + 2-oxoglutarate**

References

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Deep Research

Asta

(hisC-deep-research-asta.md)

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Falcon

(hisC-deep-research-falcon.md)

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OpenScientist

(hisC-deep-research-openscientist.md)

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