rbsA-I

UniProt ID: Q88K37
Organism: Pseudomonas putida KT2440
Review Status: COMPLETE
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Gene Description

RbsA-I is the peripheral membrane ATP-binding component of the PP_2454-PP_2459 carbohydrate ABC importer. It hydrolyzes ATP to energize the neighboring RbsC permease and is inferred from locus context to support D-ribose uptake; its allose-related PANTHER subfamily label is not treated as substrate-specific evidence.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0000166 nucleotide binding
IEA
GO_REF:0000104
MODIFY
Summary: True but less informative than the ATP-binding and ATP-hydrolysis annotations.
Reason: Nucleotide binding is correct but general; the Walker A motifs bind ATP, so the specific child ATP binding (GO:0005524), already on this gene, is preferred.
Proposed replacements: ATP binding
GO:0005524 ATP binding
IEA
GO_REF:0000120
KEEP AS NON CORE
Summary: Correct substrate binding for an ABC energy-coupling ATPase.
GO:0005886 plasma membrane
IEA
GO_REF:0000044
ACCEPT
Summary: Correct membrane association through the transporter, although RbsA-I is a peripheral ATPase rather than an integral membrane subunit.
Reason: The peripheral ATPase acts on the cytoplasmic face of the inner (plasma) membrane, where the transport activity occurs; accepted, consistent with the E. coli RbsA review.
GO:0016887 ATP hydrolysis activity
IEA
GO_REF:0000002
ACCEPT
Summary: Direct catalytic activity that supplies energy to the ABC importer.
GO:0015749 monosaccharide transmembrane transport
ISS
file:PSEPK/rbsA-I/rbsA-I-uniprot.txt
NEW
Summary: Proposed process annotation for the ATPase subunit of the contiguous RbsABC locus, stated at the monosaccharide level that the family classification supports; D-ribose specificity remains a locus-context inference without independent support for this protein.
Reason: Q88K37 is classified in the InterPro ABC carbohydrate-import ATPase family (IPR050107) and carries both CDD carbohydrate/monosaccharide uptake ABC-ATPase domains (cd03216, cd03215), which places it in the energizing subunits of monosaccharide ABC importers. This proposal was previously D-ribose transmembrane transport (GO:0015752), supported only by the submitter-supplied name (ECO:0000313); D-ribose specificity rests on the neighbouring rbsB/rbsC/rbsK/rbsD genes and on E. coli RbsA orthology, and substrate specificity resides in the binding protein, not the ATPase. The PANTHER subfamily (D-allose import ATPase-related) does not resolve ribose versus allose, so the term is stated at the monosaccharide level. Family-level evidence only; no assay of the KT2440 protein exists.
Supporting Evidence:
file:PSEPK/rbsA-I/rbsA-I-uniprot.txt
DR InterPro; IPR050107; ABC_carbohydrate_import_ATPase.
file:PSEPK/rbsA-I/rbsA-I-uniprot.txt
DR CDD; cd03216; ABC_Carb_Monos_I; 1.
GO:0043190 ATP-binding cassette (ABC) transporter complex
ISS
file:PSEPK/rbsA-I/rbsA-I-uniprot.txt
NEW
Summary: Proposed complex membership for the energy-coupling subunit.
Reason: Q88K37 has two PROSITE ABC transporter domains (residues 11-252 and 254-508) and is classified in the InterPro ABC carbohydrate-import ATPase family (IPR050107). Members of this family are the cytoplasmic nucleotide-binding subunits that assemble with a permease and a periplasmic binding protein into an ABC importer, so membership in an ABC transporter complex is inferred from family classification; the complex has not been isolated in KT2440.
Supporting Evidence:
file:PSEPK/rbsA-I/rbsA-I-uniprot.txt
DR InterPro; IPR050107; ABC_carbohydrate_import_ATPase.
file:PSEPK/rbsA-I/rbsA-I-uniprot.txt
DR PROSITE; PS50893; ABC_TRANSPORTER_2; 2.

Core Functions

Hydrolyzes ATP to energize the RbsABC carbohydrate importer and thereby contributes to monosaccharide uptake through the neighboring RbsC permease; by locus context the substrate is probably D-ribose, which the family classification alone does not resolve.

Supporting Evidence:
  • file:PSEPK/rbsA-I/rbsA-I-uniprot.txt
    DR InterPro; IPR050107; ABC_carbohydrate_import_ATPase.
  • file:PSEPK/rbsA-I/rbsA-I-uniprot.txt
    DR CDD; cd03216; ABC_Carb_Monos_I; 1.
  • file:PSEPK/rbsA-I/rbsA-I-uniprot.txt
    DR Pfam; PF00005; ABC_tran; 2.

References

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Suggested Questions for Experts

Q: Does RbsA-I couple specifically to RbsC and Q88K38-bound D-ribose in KT2440?

Q: Is the PP_2454-PP_2459 importer specific for D-ribose (as locus context and E. coli RbsA orthology suggest) rather than D-allose (as the PANTHER subfamily label suggests)? A D-ribose transmembrane transport (GO:0015752) annotation was withdrawn to the monosaccharide level pending direct evidence, such as growth or uptake assays of a PP_2455 deletion on D-ribose.

Suggested Experiments

Experiment: Reconstitute RbsA-I with RbsC and RbsB and measure substrate-dependent ATPase and transport activity.

Type: transporter reconstitution

Deep Research

OpenScientist

(rbsA-I-deep-research-openscientist.md)

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πŸ“š Additional Documentation

Notes

(rbsA-I-notes.md)

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