RbsA-I is the peripheral membrane ATP-binding component of the PP_2454-PP_2459 carbohydrate ABC importer. It hydrolyzes ATP to energize the neighboring RbsC permease and is inferred from locus context to support D-ribose uptake; its allose-related PANTHER subfamily label is not treated as substrate-specific evidence.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
| GO:0000166 nucleotide binding | IEA GO_REF:0000104 | MODIFY | Summary: True but less informative than the ATP-binding and ATP-hydrolysis annotations. Reason: Nucleotide binding is correct but general; the Walker A motifs bind ATP, so the specific child ATP binding (GO:0005524), already on this gene, is preferred. Proposed replacements: ATP binding |
| GO:0005524 ATP binding | IEA GO_REF:0000120 | KEEP AS NON CORE | Summary: Correct substrate binding for an ABC energy-coupling ATPase. |
| GO:0005886 plasma membrane | IEA GO_REF:0000044 | ACCEPT | Summary: Correct membrane association through the transporter, although RbsA-I is a peripheral ATPase rather than an integral membrane subunit. Reason: The peripheral ATPase acts on the cytoplasmic face of the inner (plasma) membrane, where the transport activity occurs; accepted, consistent with the E. coli RbsA review. |
| GO:0016887 ATP hydrolysis activity | IEA GO_REF:0000002 | ACCEPT | Summary: Direct catalytic activity that supplies energy to the ABC importer. |
| GO:0015749 monosaccharide transmembrane transport | ISS file:PSEPK/rbsA-I/rbsA-I-uniprot.txt | NEW | Summary: Proposed process annotation for the ATPase subunit of the contiguous RbsABC locus, stated at the monosaccharide level that the family classification supports; D-ribose specificity remains a locus-context inference without independent support for this protein. Reason: Q88K37 is classified in the InterPro ABC carbohydrate-import ATPase family (IPR050107) and carries both CDD carbohydrate/monosaccharide uptake ABC-ATPase domains (cd03216, cd03215), which places it in the energizing subunits of monosaccharide ABC importers. This proposal was previously D-ribose transmembrane transport (GO:0015752), supported only by the submitter-supplied name (ECO:0000313); D-ribose specificity rests on the neighbouring rbsB/rbsC/rbsK/rbsD genes and on E. coli RbsA orthology, and substrate specificity resides in the binding protein, not the ATPase. The PANTHER subfamily (D-allose import ATPase-related) does not resolve ribose versus allose, so the term is stated at the monosaccharide level. Family-level evidence only; no assay of the KT2440 protein exists. Supporting Evidence: file:PSEPK/rbsA-I/rbsA-I-uniprot.txt DR InterPro; IPR050107; ABC_carbohydrate_import_ATPase. file:PSEPK/rbsA-I/rbsA-I-uniprot.txt DR CDD; cd03216; ABC_Carb_Monos_I; 1. |
| GO:0043190 ATP-binding cassette (ABC) transporter complex | ISS file:PSEPK/rbsA-I/rbsA-I-uniprot.txt | NEW | Summary: Proposed complex membership for the energy-coupling subunit. Reason: Q88K37 has two PROSITE ABC transporter domains (residues 11-252 and 254-508) and is classified in the InterPro ABC carbohydrate-import ATPase family (IPR050107). Members of this family are the cytoplasmic nucleotide-binding subunits that assemble with a permease and a periplasmic binding protein into an ABC importer, so membership in an ABC transporter complex is inferred from family classification; the complex has not been isolated in KT2440. Supporting Evidence: file:PSEPK/rbsA-I/rbsA-I-uniprot.txt DR InterPro; IPR050107; ABC_carbohydrate_import_ATPase. file:PSEPK/rbsA-I/rbsA-I-uniprot.txt DR PROSITE; PS50893; ABC_TRANSPORTER_2; 2. |
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Download this section (compressed HTML)Q: Does RbsA-I couple specifically to RbsC and Q88K38-bound D-ribose in KT2440?
Q: Is the PP_2454-PP_2459 importer specific for D-ribose (as locus context and E. coli RbsA orthology suggest) rather than D-allose (as the PANTHER subfamily label suggests)? A D-ribose transmembrane transport (GO:0015752) annotation was withdrawn to the monosaccharide level pending direct evidence, such as growth or uptake assays of a PP_2455 deletion on D-ribose.
Experiment: Reconstitute RbsA-I with RbsC and RbsB and measure substrate-dependent ATPase and transport activity.
Type: transporter reconstitution
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