thrB

UniProt ID: Q88RK8
Organism: Pseudomonas putida KT2440
Review Status: COMPLETE
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Gene Description

ThrB (PP_0121) is a Pseudomonas-type homoserine kinase that uses ATP to phosphorylate L-homoserine, producing O-phospho-L-homoserine for threonine synthase. It belongs to the type II homoserine-kinase family with an aminoglycoside-phosphotransferase-like fold. Native ThrB has been coexpressed with ThrC and heterologous ThrA in engineered KT2440 to increase threonine production.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0004413 homoserine kinase activity
IEA
GO_REF:0000120
ACCEPT
Summary: Homoserine kinase is supported by a curated substrate-specific family and native cloning.
Reason: HAMAP MF_00301, TIGR00938 and the Pseudomonas-type ThrB family establish the inference; the generic APH fold does not imply antibiotic phosphorylation. PMID:40236303 corroborates native construct identity and pathway engineering, not individual kinetic measurements.
Supporting Evidence:
file:PSEPK/thrB/thrB-uniprot.txt
Reaction=L-homoserine + ATP = O-phospho-L-homoserine + ADP + H(+)
file:PSEPK/thrB/thrB-uniprot.txt
HAMAP; MF_00301; Homoser_kinase_2; 1.
PMID:40236303
the remaining genes of the metabolic pathway – thrB and thrC – were overexpressed as well.
file:PSEPK/PP_4473/PP_4473-bioinformatics/primer-identity/RESULTS.md
The thrB_ecoRI_F primer matches MSVFTPVT at the N terminus of ThrB/PP_0121/Q88RK8, and thrB_not_R matches its terminal LHLPFAL.
GO:0009088 L-threonine biosynthetic process
IEA
GO_REF:0000120
ACCEPT
Summary: ThrB phosphorylates homoserine for the terminal threonine-forming reaction.
Reason: The curated reaction and native ThrB/ThrC coexpression support this pathway role. P. aeruginosa ThrB/ThrH redundancy does not establish KT2440 dispensability or a native bypass.
Supporting Evidence:
file:PSEPK/thrB/thrB-uniprot.txt
Reaction=L-homoserine + ATP = O-phospho-L-homoserine + ADP + H(+)
file:PSEPK/thrB/thrB-uniprot.txt
HAMAP; MF_00301; Homoser_kinase_2; 1.
PMID:40236303
the remaining genes of the metabolic pathway – thrB and thrC – were overexpressed as well.
GO:0019202 amino acid kinase activity
IEA
GO_REF:0000118
MODIFY
Summary: Refine amino-acid kinase activity to homoserine kinase.
Reason: The specific homoserine substrate is supported by HAMAP and family signatures and is already represented by GO:0004413.
Proposed replacements: homoserine kinase activity
Supporting Evidence:
file:PSEPK/thrB/thrB-uniprot.txt
Reaction=L-homoserine + ATP = O-phospho-L-homoserine + ADP + H(+)
file:PSEPK/thrB/thrB-uniprot.txt
HAMAP; MF_00301; Homoser_kinase_2; 1.

Core Functions

ATP-dependent phosphorylation of L-homoserine supplies O-phospho-L-homoserine for threonine biosynthesis.

Supporting Evidence:
  • file:PSEPK/thrB/thrB-uniprot.txt
    Reaction=L-homoserine + ATP = O-phospho-L-homoserine + ADP + H(+)
  • file:PSEPK/thrB/thrB-uniprot.txt
    HAMAP; MF_00301; Homoser_kinase_2; 1.
  • PMID:40236303
    the remaining genes of the metabolic pathway – thrB and thrC – were overexpressed as well.

References

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Deep Research

OpenScientist

(thrB-deep-research-openscientist.md)

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πŸ“š Additional Documentation

Notes

(thrB-notes.md)

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