treSB

UniProt ID: Q88FN0
Organism: Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
Review Status: DRAFT
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Gene Description

TreSB (PP_4059) is a large bifunctional carbohydrate enzyme with an N-terminal GH13 TreS domain and a C-terminal maltokinase domain. It interconverts maltose and alpha,alpha-trehalose (EC 5.4.99.16) and separately phosphorylates maltose with ATP to produce alpha-maltose 1-phosphate (EC 2.7.1.175), the donor used by adjacent GlgE.

Proposed New Ontology Terms

maltokinase activity

Definition: Catalysis of the reaction D-maltose + ATP = alpha-maltose 1-phosphate + ADP + H(+).

Justification: TreSB has an explicitly assigned EC 2.7.1.175/RHEA:31915 maltokinase reaction and a TreS-maltokinase C-terminal domain, but the local GO ontology has no substrate-specific molecular-function term for this activity.

Parent term: carbohydrate kinase activity

Existing Annotations Review

GO Term Evidence Action Reason
GO:0003824 catalytic activity
IEA
GO_REF:0000002
MARK AS OVER ANNOTATED
Summary: TreSB is catalytic, but this root term hides both specific reactions.
Reason: GO:0047471 captures the TreS reaction and a separate kinase annotation is needed for maltose phosphorylation, so the root catalytic term should not be propagated as an independent function.
Supporting Evidence:
file:PSEPK/treSB/treSB-uniprot.txt
EC=2.7.1.175
file:PSEPK/treSB/treSB-uniprot.txt
EC=5.4.99.16
GO:0005975 carbohydrate metabolic process
IEA
GO_REF:0000002
MARK AS OVER ANNOTATED
Summary: Both TreSB reactions directly interconvert carbohydrate metabolites.
Reason: The annotation is correct but too broad to describe TreSB's role. It is marked as over-annotated without assigning the protein every downstream reaction in trehalose or alpha-glucan metabolism.
Supporting Evidence:
file:PSEPK/treSB/treSB-uniprot.txt
Reaction=D-maltose = alpha,alpha-trehalose
GO:0047471 maltose alpha-D-glucosyltransferase activity
IEA
GO_REF:0000120
ACCEPT
Summary: The TreS domain interconverts D-maltose and alpha,alpha-trehalose.
Reason: The record assigns EC 5.4.99.16/RHEA:15145, a TreS-specific N-terminal domain, and PTHR10357:SF219 named maltose alpha-D-glucosyltransferase. This supports one half of the bifunctional protein but not its separate maltokinase reaction.
Supporting Evidence:
file:PSEPK/treSB/treSB-uniprot.txt
Reaction=D-maltose = alpha,alpha-trehalose
file:PSEPK/treSB/treSB-uniprot.txt
DR InterPro; IPR012810; TreS/a-amylase_N.
GO:0019200 carbohydrate kinase activity
IC
file:PSEPK/treSB/treSB-uniprot.txt
NEW
Summary: The C-terminal maltokinase domain phosphorylates D-maltose with ATP to produce alpha-maltose 1-phosphate.
Reason: UniProt assigns EC 2.7.1.175/RHEA:31915 and a TreS-maltokinase C-terminal domain, but the seeded GOA lacks the kinase half of this bifunctional protein. GO lacks a substrate-specific maltokinase term, and GO:0019200 is the most specific available parent for phosphorylation of a carbohydrate substrate.
Supporting Evidence:
file:PSEPK/treSB/treSB-uniprot.txt
Reaction=D-maltose + ATP = alpha-maltose 1-phosphate + ADP + H(+)
file:PSEPK/treSB/treSB-uniprot.txt
DR InterPro; IPR012811; TreS_maltokin_C_dom.
GO:0030979 alpha-glucan biosynthetic process
IC
file:PSEPK/treSB/treSB-uniprot.txt
NEW
Summary: The fused maltokinase activity supplies alpha-maltose 1-phosphate directly to the adjacent GlgE polymer-extension reaction.
Reason: The Mak half of TreSB produces the dedicated donor consumed by GlgE, supporting direct participation of the fused protein in alpha-glucan biosynthesis without assigning the reversible TreS reaction alone to that process.
Supporting Evidence:
file:PSEPK/treSB/treSB-uniprot.txt
Reaction=D-maltose + ATP = alpha-maltose 1-phosphate + ADP + H(+)
file:PSEPK/glgE/glgE-uniprot.txt
Maltosyltransferase that uses maltose 1-phosphate (M1P)

Core Functions

Interconverts D-maltose and alpha,alpha-trehalose through the GH13 TreS catalytic domain.

Supporting Evidence:
  • file:PSEPK/treSB/treSB-uniprot.txt
    Reaction=D-maltose = alpha,alpha-trehalose
  • file:PSEPK/treSB/treSB-deep-research-openscientist.md
    **treSB** (ordered locus name **PP_4059**; UniProt **Q88FN0**) of *Pseudomonas putida* KT2440 encodes a large (~1,106-residue, ~125.6 kDa), cytoplasmic, **bifunctional "fused trehalose synthase B / maltokinase"** enzyme.

Uses ATP to phosphorylate D-maltose to alpha-maltose 1-phosphate through the fused C-terminal maltokinase domain.

Supporting Evidence:
  • file:PSEPK/treSB/treSB-uniprot.txt
    Reaction=D-maltose + ATP = alpha-maltose 1-phosphate + ADP + H(+)
  • file:PSEPK/glgE/glgE-uniprot.txt
    Maltosyltransferase that uses maltose 1-phosphate (M1P)
  • file:PSEPK/treSB/treSB-deep-research-openscientist.md
    `D-maltose + ATP = α-maltose 1-phosphate + ADP + H⁺` (the maltokinase reaction).

References

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Deep Research

OpenScientist

(treSB-deep-research-openscientist.md)

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πŸ“š Additional Documentation

Notes

(treSB-notes.md)

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