ureA

UniProt ID: Q88J06
Organism: Pseudomonas putida KT2440
Review Status: DRAFT
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Gene Description

UreA is the cytoplasmic gamma structural subunit of the three-chain bacterial urease. It assembles with UreB and UreC to form the UreABC apoprotein and contributes to urease-catalyzed urea hydrolysis after UreDEFG-dependent installation of the dinickel active site in UreC.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0005737 cytoplasm
IEA
GO_REF:0000120
ACCEPT
Summary: The reviewed UniProt record places the UreA subunit in the cytoplasm.
Reason: Cytoplasmic localization is consistent with assembly and activity of the soluble UreABC complex.
GO:0009039 urease activity
IEA
GO_REF:0000120
MARK AS OVER ANNOTATED
Summary: UreA is required for the heteromeric urease complex but does not independently catalyze urea hydrolysis.
Reason: The activity term is biologically relevant, but the enables qualifier overstates an individual structural subunit. UreA contributes to the UreABC complex activity; the dinickel catalytic center resides in UreC (PMID:8718850).
GO:0016151 nickel cation binding
IEA
GO_REF:0000002
REMOVE
Summary: The InterPro transfer assigns nickel binding to UreA, although the urease nickel site resides in UreC.
Reason: Structural evidence places the binickel active center in the alpha/UreC subunit, not in the gamma/UreA chain (PMID:8718850); no target-specific evidence supports a separate nickel-binding role for Q88J06.
GO:0019627 urea metabolic process
IEA
GO_REF:0000002
KEEP AS NON CORE
Summary: UreA participates specifically in urea catabolism as part of urease.
Reason: The broader ancestor is biologically true but less informative than the supported child term GO:0043419.
GO:0043419 urea catabolic process
IEA
GO_REF:0000120
ACCEPT
Summary: UreA is a required structural component of the urea-hydrolyzing urease complex.
Reason: The UreABC complex directly performs the defining reaction of urea catabolism.
GO:0035550 urease complex
IEA
file:PSEPK/ureA/ureA-uniprot.txt
NEW
Summary: UreA is the gamma structural subunit of the UreABC urease complex.
Reason: Reviewed UniProt and alpha-beta-gamma structural evidence support explicit complex membership.
GO:0005198 structural molecule activity
ISS
PMID:8718850
Structures of the Klebsiella aerogenes urease apoenzyme and ...
NEW
Summary: UreA supplies structural integrity to the heteromeric urease complex.
Reason: The gamma chain is a noncatalytic structural subunit of the alpha-beta-gamma assembly.
Supporting Evidence:
PMID:8718850
Urease from Klebsiella aerogenes [Jabri et al. (1995) Science 268, 998-1004] is an (alpha beta gamma)3 trimer with each alpha-subunit having an (alpha beta)8-barrel domain containing a binickel active center.

Core Functions

Gamma structural subunit contributing to urease activity in the UreABC complex.

Molecular Function:
structural molecule activity
Directly Involved In:
Cellular Locations:
In Complex:
urease complex
Supporting Evidence:
  • PMID:8718850
    Urease from Klebsiella aerogenes [Jabri et al. (1995) Science 268, 998-1004] is an (alpha beta gamma)3 trimer with each alpha-subunit having an (alpha beta)8-barrel domain containing a binickel active center.

References

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Suggested Questions for Experts

Q: Has the PP_2843 UreA subunit been tested directly for assembly of active KT2440 urease?

Suggested Experiments

Experiment: Delete ureA and test restoration of UreABC assembly and urease activity by complementation with Q88J06.

Hypothesis: Q88J06 is required for assembly of catalytically competent KT2440 UreABC.

Type: Gene deletion, complementation, native complex analysis, and urease assay

πŸ“š Additional Documentation

Notes

(ureA-notes.md)

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