PoMZ_10221

UniProt ID: F8U970
Organism: Pyricularia oryzae
Review Status: IN PROGRESS
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Gene Description

PoMZ_10221 encodes a bifunctional UDP-4-keto-6-deoxyglucose 3,5-epimerase and 4-reductase in Pyricularia oryzae. The enzyme converts UDP-4-keto-6-deoxyglucose to UDP-rhamnose, using NADPH for the reduction step. It provides activated rhamnose for fungal rhamnose-containing glycans.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0006556 S-adenosylmethionine biosynthetic process
IEA
GO_REF:0000118
UNDECIDED
Summary: SAM-biosynthetic participation remains unresolved after report review.
Reason: A MAT regulatory subunit can contribute to SAM synthesis alongside a separate catalytic enzyme. Therefore the reported presence of another SAM synthetase is not evidence that this process annotation is redundant or wrong. The focused OpenScientist report was critically incorporated. Its sequence-identity contrast, absence of MAT experiments in the sugar-enzyme paper, and existence of a separate SAM synthetase do not refute a regulatory second function. The current reference tree recovers graft PTN008946252 below MAT-complex/SAM IBD PTN000051875, but lacks the exact target reference leaf; the historical regulator-term path remains unresolved. Full PMID:25075345 establishes a C-terminal interaction motif in human MAT2B variant V2. F8U970 sequence version 1 has a different C terminus, making simple interface conservation doubtful without proving all fungal MAT association impossible. No target-specific interaction or loss evidence resolves the claim.
Propagation Review
Root cause: UNRESOLVED
Sources checked:
PANTHER:PTN008946252 Β· PTN008946252 UNRESOLVED
Frozen graft is recovered but exact target reference leaf is absent. Existing MAT-complex/SAM IBD ancestry and regulator-term version discrepancy were retained; report did not reconstruct a target-specific loss or resolve the historical graft.
Supporting Evidence:
PMID:25075345
three residues at the end of the C-terminal of MATΞ²V2 (Val321Phe322His323)
file:PYROR/PoMZ_10221/PoMZ_10221-hypotheses/rhamnose-enzyme-and-mat-regulatory-capacity/openscientist.md
No experiment has *tested* MAT-binding by F8U970.
GO:0048269 methionine adenosyltransferase complex
IEA
GO_REF:0000118
UNDECIDED
Summary: MAT-complex membership remains unresolved after report review.
Reason: The human primary complex contains catalytic and regulatory subunits. A mammalian characterization does not establish universal absence of related fungal assemblies, and the recovered graft requires version-aware evaluation. The focused OpenScientist report was critically incorporated. Its sequence-identity contrast, absence of MAT experiments in the sugar-enzyme paper, and existence of a separate SAM synthetase do not refute a regulatory second function. The current reference tree recovers graft PTN008946252 below MAT-complex/SAM IBD PTN000051875, but lacks the exact target reference leaf; the historical regulator-term path remains unresolved. Full PMID:25075345 establishes a C-terminal interaction motif in human MAT2B variant V2. F8U970 sequence version 1 has a different C terminus, making simple interface conservation doubtful without proving all fungal MAT association impossible. No target-specific interaction or loss evidence resolves the claim.
Propagation Review
Root cause: UNRESOLVED
Sources checked:
PANTHER:PTN008946252 Β· PTN008946252 UNRESOLVED
Frozen graft is recovered but exact target reference leaf is absent. Existing MAT-complex/SAM IBD ancestry and regulator-term version discrepancy were retained; report did not reconstruct a target-specific loss or resolve the historical graft.
Supporting Evidence:
PMID:25075345
three residues at the end of the C-terminal of MATΞ²V2 (Val321Phe322His323)
file:PYROR/PoMZ_10221/PoMZ_10221-hypotheses/rhamnose-enzyme-and-mat-regulatory-capacity/openscientist.md
No experiment has *tested* MAT-binding by F8U970.
GO:0048270 methionine adenosyltransferase regulator activity
IEA
GO_REF:0000118
UNDECIDED
Summary: MAT regulator activity remains unresolved after report review.
Reason: Sugar-nucleotide catalysis does not exclude a second interaction function. The human C-terminal motif comparison is relevant target-sequence evidence, but it is not a validated test for every regulatory interface in this family. The focused OpenScientist report was critically incorporated. Its sequence-identity contrast, absence of MAT experiments in the sugar-enzyme paper, and existence of a separate SAM synthetase do not refute a regulatory second function. The current reference tree recovers graft PTN008946252 below MAT-complex/SAM IBD PTN000051875, but lacks the exact target reference leaf; the historical regulator-term path remains unresolved. Full PMID:25075345 establishes a C-terminal interaction motif in human MAT2B variant V2. F8U970 sequence version 1 has a different C terminus, making simple interface conservation doubtful without proving all fungal MAT association impossible. No target-specific interaction or loss evidence resolves the claim.
Propagation Review
Root cause: UNRESOLVED
Sources checked:
PANTHER:PTN008946252 Β· PTN008946252 UNRESOLVED
Frozen graft is recovered but exact target reference leaf is absent. Existing MAT-complex/SAM IBD ancestry and regulator-term version discrepancy were retained; report did not reconstruct a target-specific loss or resolve the historical graft.
Supporting Evidence:
PMID:25075345
three residues at the end of the C-terminal of MATΞ²V2 (Val321Phe322His323)
file:PYROR/PoMZ_10221/PoMZ_10221-hypotheses/rhamnose-enzyme-and-mat-regulatory-capacity/openscientist.md
No experiment has *tested* MAT-binding by F8U970.
GO:0010489 UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity
IDA
PMID:22102281
Biosynthesis of UDP-4-keto-6-deoxyglucose and UDP-rhamnose i...
ACCEPT
Summary: The fungal enzyme catalyzes the paired epimerization/reduction steps producing UDP-rhamnose.
Reason: PMID:22102281 is the direct IDA source for this F8U970/AEH41994.1 protein and reports recombinant bifunctional enzyme conversion of UDP-4-keto-6-deoxyglucose to UDP-rhamnose. NMR identifies the product and NADPH-supported reduction; the intermediate epimerized sugar is not released detectably without reduction. Both molecular activities and direct rhamnose biosynthetic participation are supported; the enzyme performs the conversion rather than merely being required upstream. The incomplete cached HTML is supplemented by accessible primary publisher/PMC indexed Results.
Supporting Evidence:
PMID:22102281
The second gene encodes a bifunctional UDP-4-keto-6-deoxyglucose-3,5-epimerase/-4-reductase that converts UDP-4-keto-6-deoxyglucose to UDP-rhamnose.
GO:0010490 UDP-4-keto-rhamnose-4-keto-reductase activity
IDA
PMID:22102281
Biosynthesis of UDP-4-keto-6-deoxyglucose and UDP-rhamnose i...
ACCEPT
Summary: The fungal enzyme catalyzes the paired epimerization/reduction steps producing UDP-rhamnose.
Reason: PMID:22102281 is the direct IDA source for this F8U970/AEH41994.1 protein and reports recombinant bifunctional enzyme conversion of UDP-4-keto-6-deoxyglucose to UDP-rhamnose. NMR identifies the product and NADPH-supported reduction; the intermediate epimerized sugar is not released detectably without reduction. Both molecular activities and direct rhamnose biosynthetic participation are supported; the enzyme performs the conversion rather than merely being required upstream. The incomplete cached HTML is supplemented by accessible primary publisher/PMC indexed Results.
Supporting Evidence:
PMID:22102281
The second gene encodes a bifunctional UDP-4-keto-6-deoxyglucose-3,5-epimerase/-4-reductase that converts UDP-4-keto-6-deoxyglucose to UDP-rhamnose.
GO:0019300 rhamnose biosynthetic process
IDA
PMID:22102281
Biosynthesis of UDP-4-keto-6-deoxyglucose and UDP-rhamnose i...
ACCEPT
Summary: The fungal enzyme catalyzes the paired epimerization/reduction steps producing UDP-rhamnose.
Reason: PMID:22102281 is the direct IDA source for this F8U970/AEH41994.1 protein and reports recombinant bifunctional enzyme conversion of UDP-4-keto-6-deoxyglucose to UDP-rhamnose. NMR identifies the product and NADPH-supported reduction; the intermediate epimerized sugar is not released detectably without reduction. Both molecular activities and direct rhamnose biosynthetic participation are supported; the enzyme performs the conversion rather than merely being required upstream. The incomplete cached HTML is supplemented by accessible primary publisher/PMC indexed Results.
Supporting Evidence:
PMID:22102281
The second gene encodes a bifunctional UDP-4-keto-6-deoxyglucose-3,5-epimerase/-4-reductase that converts UDP-4-keto-6-deoxyglucose to UDP-rhamnose.

Core Functions

Catalyzes the epimerization component of the bifunctional UDP-rhamnose-producing reaction.

Supporting Evidence:
  • PMID:22102281
    The second gene encodes a bifunctional UDP-4-keto-6-deoxyglucose-3,5-epimerase/-4-reductase that converts UDP-4-keto-6-deoxyglucose to UDP-rhamnose.

Catalyzes NADPH-dependent reduction of the epimerized nucleotide sugar to UDP-rhamnose.

Supporting Evidence:
  • PMID:22102281
    The second gene encodes a bifunctional UDP-4-keto-6-deoxyglucose-3,5-epimerase/-4-reductase that converts UDP-4-keto-6-deoxyglucose to UDP-rhamnose.

References

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Suggested Questions for Experts

Q: Can the historical TreeGrafter placement and MAT-related IBD scope be resolved for the exact F8U970 sequence, and is a regulatory interaction conserved despite its different C terminus?

Deep Research

OpenAI

(PoMZ_10221-deep-research-openai.md)

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OpenScientist

(PoMZ_10221-hypotheses/rhamnose-enzyme-and-mat-regulatory-capacity/openscientist.md)

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πŸ“š Additional Documentation

Notes

(PoMZ_10221-notes.md)

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