jumble

UniProt ID: F2TWH0
Organism: Salpingoeca rosetta
Review Status: DRAFT
Aliases:
PTSG_00436
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Gene Description

jumble encodes a 467-amino-acid, single-exon protein of the choanoflagellate Salpingoeca rosetta with a single predicted N-terminal transmembrane segment followed by a large C-terminal region. No known protein domain is detected by InterPro or Pfam, but fold-recognition methods (HHpred, Phyre2) relate it to the catalytic domain of polypeptide N-acetylgalactosaminyltransferases, and it is therefore regarded as a predicted glycosyltransferase; no enzymatic activity, donor or acceptor substrate has been demonstrated. A fluorescently tagged Jumble protein localizes to the apical pole of the cell near the flagellar base, at the position of the Golgi apparatus. A missense allele (L305P, jumble-lw1) that mislocalizes the protein to the endoplasmic reticulum causes cells to clump promiscuously and to fail to form rosette colonies in response to bacterial rosette-inducing factors; mutant cells lose basal-pole staining by the lectin jacalin and fail to upregulate and secrete the rosette-ECM protein Rosetteless. Transgenic wild-type jumble restores rosette formation and basal jacalin staining. Jumble is thus required for normal glycan presentation in the basal extracellular matrix, for suppression of spurious cell-cell adhesion, and for rosette development. Homologs occur across choanoflagellates and in some fungi but not in animals.

Existing Annotations Review

GO Term Evidence Action Reason
GO:0005794 Golgi apparatus
IDA
PMID:30556809
Predicted glycosyltransferases promote development and preve...
NEW
Summary: A Jumble-mWasabi fusion expressed from the efl promoter in wild-type S. rosetta localized to the apical pole of the cell body near the base of the flagellum, both with and without rosette-inducing factors. By comparison with transmission electron micrographs this position corresponds to the Golgi apparatus, and the authors conclude that Jumble localizes to the Golgi. The functionally dead L305P allele instead is retained in the ER.
Reason: Direct imaging of the tagged protein supports a Golgi location, which is also consistent with the predicted type-II-like topology (single N-terminal TM segment) typical of Golgi glycosyltransferases. Caveats: the construct is tagged and driven by a heterologous promoter, and no Golgi marker exists yet in S. rosetta, so organelle identity is assigned by position relative to ultrastructure rather than by co-localization. Proposed at the general Golgi apparatus level; Golgi membrane or a specific cisterna is not established.
Supporting Evidence:
PMID:30556809
Jumble-mWasabi protein localized to the apical pole of the cell body near the base of the flagellum.
PMID:30556809
Jumble-mWasabi localization corresponds to the location of the Golgi apparatus, for which there is not yet a fluorescent marker in S.
PMID:30556809
Consistent with its role as a glycosyltransferase, Jumble localized to the Golgi apparatus, but Couscous appeared to localize in cytoplasmic puncta and to the cell membrane.

Core Functions

Predicted Golgi-resident glycosyltransferase-like protein required for normal glycan presentation (jacalin-reactive glycans) at the basal pole and in the rosette extracellular matrix, for suppression of promiscuous cell clumping, and for rosette development. The glycosyltransferase molecular function is a prediction from remote fold recognition only (no InterPro/Pfam signature, a low-confidence CDD hit, HHpred/Phyre2 similarity to polypeptide GalNAc-transferases); no activity, donor sugar or acceptor has been shown, and the mutant phenotype could also reflect a defect in trafficking of glycosylated cargo to the basal pole rather than loss of a glycosylation step.

Molecular Function:
glycosyltransferase activity
Cellular Locations:
Supporting Evidence:
  • PMID:30556809
    predict that Jumble is related to well-annotated glycosyltransferases (HHphred: E-value 7.5βˆ’19 to polypeptide N-acetylgalactosaminyltransferase 4; Phyre2: Confidence 94.5% to human polypeptide n-acetylgalactosaminyltransferase 2)
  • PMID:30556809
    Although Interpro (Finn et al., 2017) and Pfam (Finn et al., 2016) did not reveal any known protein domains in Jumble, the NCBI Conserved Domain Search (Marchler-Bauer et al., 2017) predicted a glycosyltransferase domain with low confidence
  • PMID:30556809
    Transformation of Jumble cells with mTFP-jumble not only rescued rosette development (Figure 2C,D), but also restored the wild type glycosylation pattern
  • PMID:30556809
    either disrupt proper trafficking of sugar-modified molecules to the basal pole of cells or alter the glycosylation events themselves.

References

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Suggested Questions for Experts

Q: Does Jumble have glycosyltransferase activity at all, and if so which donor sugar and acceptor does it use? Its only link to glycosyltransferases is fold recognition to polypeptide GalNAc-transferases, and it lacks any InterPro/Pfam signature.

Q: Is the loss of basal jacalin staining in jumble mutants due to loss of a glycan (a glycosylation step performed by Jumble) or to failed trafficking or secretion of normally glycosylated cargo to the basal pole? Whole-cell jacalin blots showed no difference, which favours a spatial or secretory defect.

Q: Is Rosetteless (or a cadherin or other adhesion protein) a direct glycosylation substrate of Jumble?

Q: Does the CRISPR knockout of jumble (PMID:41037400) phenocopy the jumble-lw1 clumping and rosette-defect phenotype?

Suggested Experiments

Experiment: Express the soluble luminal domain of Jumble (and fungal homologs) and assay glycosyltransferase activity against a panel of nucleotide-sugar donors and peptide/glycan acceptors (e.g. UDP-Glo assays), including Rosetteless-derived peptides.

Hypothesis: Jumble is a catalytically active glycosyltransferase.

Type: biochemical enzyme assay

Experiment: Co-localize tagged Jumble at endogenous expression levels (knock-in) with Golgi markers developed for S. rosetta, or by immuno-EM, to confirm Golgi residence and define the cisternal position.

Hypothesis: Jumble is a Golgi-resident type II membrane protein.

Type: localization / microscopy

Experiment: Compare glycan profiles (glycomics/glycoproteomics, O-glycan release) of wild-type versus jumble knockout cells and of purified rosette ECM, and test whether Rosetteless glycosylation changes.

Hypothesis: Jumble adds specific glycans to ECM glycoproteins such as Rosetteless.

Type: glycomics / mass spectrometry

Experiment: Mutate predicted catalytic residues (identified from a structural model aligned to GalNAc-T catalytic domains) and test the ability of the mutant to rescue rosette formation and basal jacalin staining in jumble knockout cells.

Hypothesis: Catalytic activity, not just protein presence, is required for Jumble function.

Type: genetic complementation

πŸ“š Additional Documentation

Notes

(jumble-notes.md)

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