rosetteless

UniProt ID: F2U5Y1
Organism: Salpingoeca rosetta
Review Status: DRAFT
Aliases:
rtls Rtls PTSG_03555
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Gene Description

Rosetteless (Rtls) is a secreted C-type lectin-like protein of the colonial choanoflagellate Salpingoeca rosetta, one of the closest living relatives of animals. The 119 kDa protein has an N-terminal signal peptide, two C-type lectin-like domains, serine/threonine-rich mucin-like stretches that are predicted to be heavily O-glycosylated, and two internal repeats of unknown function; carbohydrate binding by its lectin domains has not been tested. Rtls is required specifically for rosette development, the clonal process by which a single founding cell divides without separating to form a spherical colony in response to sulfonolipid signals from Algoriphagus bacteria. A mapped splice-site allele, an independent CRISPR-engineered premature-stop allele, and function-blocking antibodies all abolish rosette formation, while cell growth, chain-colony formation and swimming are unaffected. The protein is secreted at the basal pole of each cell; in rosettes it forms a thick extracellular layer that fills the colony interior and connects the basal poles of neighbouring cells, and in single cells and chains it is seen as weak membrane-associated patches and material deposited on the substrate. This localisation, and the fact that the other two genes known to be required for rosette development encode predicted glycosyltransferases needed for Rtls upregulation and secretion, indicate that Rtls acts as a component of the basal extracellular matrix that holds rosette cells together.

Proposed New Ontology Terms

rosette colony development

Definition: The developmental process in a unicellular colonial organism by which a single founding cell undergoes repeated incomplete cytokinesis, with daughter cells remaining attached, to form a spherical rosette colony held together by intercellular bridges and a shared basal extracellular matrix. Exemplified by rosette formation in the choanoflagellate Salpingoeca rosetta.

Justification: Rosette development in S. rosetta has a defined genetic basis (rosetteless, jumble, couscous, Hippo pathway genes) but GO has no term for clonal colony development in a unicellular organism. GO:0007275 multicellular organism development is not taxon-excluded from choanoflagellates, but GO models Dictyostelium sorocarp development (GO:0030587) outside GO:0007275 (under GO:0048856 anatomical structure development and GO:0099120 socially cooperative development), so placing colony formation under GO:0007275 would be a modelling decision for the ontology editors. A candidate parent is GO:0048856.

Supporting Evidence:

Existing Annotations Review

GO Term Evidence Action Reason
GO:0031012 extracellular matrix
IDA
PMID:25299189
The Rosetteless gene controls development in the choanoflage...
NEW
Summary: Immunofluorescence with an epitope-validated anti-Rtls antibody shows Rtls as a thick extracellular layer at the basal poles of rosette cells, filling the rosette interior; the signal is lost when the antibody is pre-competed with its epitope and is absent from Rosetteless mutant cells. The CRISPR allele likewise abolishes secretion of Rtls into the rosette interior. Later work treats this basal material as the rosette extracellular matrix.
Reason: GOA has no annotations for this protein. Extracellular matrix is the best-supported location: the protein is secreted and forms a structured extracellular layer between cells rather than diffusing into the medium. GO:0031012 (a structure external to cells providing structural support or cues) fits better than the generic extracellular region.
Supporting Evidence:
PMID:25299189
In rosettes, Rtls (cyan) was detected as a thick layer associated with the basal poles of the cells.
PMID:25299189
Rosetteless protein is essential for rosette development and forms an extracellular layer that coats and connects the basal poles of each cell in rosettes.
PMID:32496191
Mutations in rosetteless prevent the secretion of Rosetteless protein at the basal end of cells and into the interior or rosettes.
PMID:30556809
the localization of Rosetteless protein to the rosette interior suggests that it functions as part of the extracellular matrix (ECM)

Core Functions

Secreted structural component of the basal extracellular matrix of S. rosetta rosette colonies. Rtls is deposited at the basal pole of each cell and, during rosette development, forms an extracellular layer that fills the colony interior and connects neighbouring cells; loss of the protein (splice-site or CRISPR alleles) or antibody blockade abolishes rosette formation without affecting growth or chain-colony formation. The molecular basis of its activity (for example, whether its C-type lectin-like domains bind glycans on other matrix components) is unknown.

Supporting Evidence:
  • PMID:25299189
    Rosetteless protein is essential for rosette development and forms an extracellular layer that coats and connects the basal poles of each cell in rosettes.
  • PMID:25299189
    Therefore, we conclude that the function of secreted Rtls is specific to and essential for rosette development.
  • PMID:32496191
    The rosetteless C-type lectin gene is necessary for rosette development.

References

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Suggested Questions for Experts

Q: Do the C-type lectin-like domains of Rtls bind carbohydrate, and are they needed for rosette development? A CRISPR allele that removes or mutates the CTLDs, or recombinant-domain glycan-array binding, would answer this.

Q: UniProt names F2U5Y1 "Lung surfactant protein A", a label carried over from the genome project's EMBL record. Should the name be changed to Rosetteless, given that it has a literature name and no demonstrated similarity of function to animal surfactant protein A?

Q: Should GO add a term for clonal colony (rosette) development, or should such processes be annotated to GO:0007275 multicellular organism development?

Suggested Experiments

Experiment: Delete or point-mutate each C-type lectin-like domain in the endogenous rtls locus and test rosette development and Rtls secretion, to separate a glycan-binding role from a purely structural one.

Type: Domain deletion by genome editing

Experiment: Express the CTLDs recombinantly and test binding to a glycan array and to matrix material isolated from wild-type versus jumble and couscous rosettes.

Type: Glycan binding assay

Experiment: Immunoprecipitate Rtls from induced rosette cultures and identify co-purifying matrix proteins and glycoproteins.

Type: Interaction proteomics

πŸ“š Additional Documentation

Notes

(rosetteless-notes.md)

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