id: F2U943
gene_symbol: warts
aliases:
- PTSG_04961
- Warts
- Wts
- LATS homolog
product_type: PROTEIN
status: DRAFT
taxon:
  id: NCBITaxon:946362
  label: Salpingoeca rosetta
description: >-
  warts (PTSG_04961) encodes the Warts/LATS-family (NDR subgroup, AGC group)
  serine/threonine protein kinase of the colonial choanoflagellate Salpingoeca rosetta.
  The 833-residue protein has a long, largely disordered N-terminal region, a C-terminal
  protein kinase domain (residues 456-763) with the conserved ATP-binding lysine and
  catalytic aspartate and an insert between the two kinase lobes, and an AGC-kinase
  C-terminal extension. It is the S. rosetta member of the choanoflagellate-plus-animal
  Warts clade that includes human LATS1/2 and Drosophila Warts. In animals Warts/LATS,
  activated by Hippo, phosphorylates the coactivator Yorkie/YAP on HXRXXS motifs and
  keeps it out of the nucleus; the S. rosetta Yorkie homolog carries four such motifs.
  In S. rosetta, warts knockout cells proliferate more slowly than wild type, the reverse
  of the animal overgrowth phenotype, yet form rosettes with about twice as many cells as
  wild type (up to about 60 versus at most 25) around a larger, more branched core of
  extracellular matrix. Warts and Yorkie both influence expression of extracellular
  matrix genes, including couscous. Its kinase activity and substrates have not been
  measured.
existing_annotations:
- term:
    id: GO:0000082
    label: G1/S transition of mitotic cell cycle
  evidence_type: IEA
  original_reference_id: GO_REF:0000118
  qualifier: involved_in
  supporting_entities:
  - PANTHER:PTN001220369
  review:
    summary: >-
      TreeGrafter transfer. F2U943 was grafted onto PTN001220369, the Monosiga brevicollis
      Warts leaf, and inherits the IBD terms of its parent PTN002390470, a speciation node
      labelled "Metazoa-Choanoflagellida" whose descendants include human LATS1/2,
      Drosophila wts and Nematostella and M. brevicollis Warts (PANTHER 19 tree). The IBA
      for this term on human LATS1 cites mouse Lats2 and human LATS2. No cell-cycle phase
      analysis has been done in S. rosetta; warts knockout cells proliferate more slowly,
      the opposite of the animal loss-of-function phenotype [DOI:10.1101/2024.07.13.603360].
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      G1/S transition is a eukaryote-wide process, so there is no taxon violation. But the
      donor evidence is a cell-cycle role of vertebrate LATS2 (mouse Lats2, human LATS2),
      which says little about a choanoflagellate. In S. rosetta,
      loss of warts slows rather than accelerates proliferation, and no cell-cycle phase
      was measured, so nothing supports a direct role in the G1/S transition. Kept as an
      over-annotation rather than removed, because the IBD placement at the Choanozoa node
      is a phylogenetic judgement I cannot refute with S. rosetta data.
    supported_by:
    - reference_id: DOI:10.1101/2024.07.13.603360
      supporting_text: >-
        On the other hand, hippopac1 and warts pac1 KO clones proliferated markedly slower
    - reference_id: DOI:10.1101/2024.07.13.603360
      supporting_text: >-
        down proliferation in S. rosetta, which is the opposite of their animal
        loss-of-function phenotype
    propagation_review:
      root_cause: PROPAGATION_BAD
      failure_modes:
      - CONTEXT_OR_TISSUE_MISMATCH
      source_entities:
      - source_id: PANTHER:PTN002390470
        source_label: Warts/LATS, Metazoa-Choanoflagellida node
        source_status: SUPPORTS_SOURCE_BUT_NOT_TARGET
        comment: >-
          IBD supported by vertebrate LATS2 cell-cycle evidence (MGI Lats2, human LATS2);
          sound for vertebrates, but no evidence the role extends to choanoflagellates.
      - source_id: PANTHER:PTN001220369
        source_label: M. brevicollis Warts leaf
        source_status: NOT_RELEVANT
        comment: >-
          Graft point only; carries no experimental annotation of its own.
- term:
    id: GO:0000166
    label: nucleotide binding
  evidence_type: IEA
  original_reference_id: GO_REF:0000104
  qualifier: enables
  supporting_entities:
  - UniRule:UR001503341
  review:
    summary: >-
      UniRule assignment from the protein kinase ATP-binding signature (ATP-binding residue
      K485).
    action: KEEP_AS_NON_CORE
    reason: >-
      True but uninformative parent of ATP binding, itself a component of the kinase
      activity. No binding measurements exist.
    supported_by:
    - reference_id: file:SALRS/warts/warts-uniprot.txt
      record_section: ["DR:PROSITE"]
      supporting_text: PROSITE; PS00107; PROTEIN_KINASE_ATP; 1.
- term:
    id: GO:0004672
    label: protein kinase activity
  evidence_type: IEA
  original_reference_id: GO_REF:0000002
  qualifier: enables
  supporting_entities:
  - InterPro:IPR008271
  review:
    summary: >-
      InterPro2GO from the Ser/Thr kinase active-site signature (IPR008271); the catalytic
      aspartate (D579, proton acceptor) is annotated as present.
    action: KEEP_AS_NON_CORE
    reason: >-
      Correct, but the more specific protein serine/threonine kinase activity term is also
      present and better describes a Warts/LATS AGC kinase. Kept as a true, less specific
      parent.
    supported_by:
    - reference_id: file:SALRS/warts/warts-uniprot.txt
      record_section: ["DR:PROSITE"]
      supporting_text: PROSITE; PS00108; PROTEIN_KINASE_ST; 1.
- term:
    id: GO:0004674
    label: protein serine/threonine kinase activity
  evidence_type: IEA
  original_reference_id: GO_REF:0000120
  qualifier: enables
  supporting_entities:
  - InterPro:IPR000961
  - EC:2.7.11.1
  - PANTHER:PTN001220369
  - UniRule:UR000416695
  review:
    summary: >-
      Combined IEA (InterPro AGC C-terminal domain, EC 2.7.11.1, PANTHER, UniRule). F2U943
      is classified in PANTHER PTHR24356:SF418 "SERINE_THREONINE-PROTEIN KINASE WARTS", the
      subfamily of human LATS1/2, and has an intact kinase domain (ATP-binding K485,
      catalytic D579) followed by an AGC C-terminal domain. In animals Warts/LATS
      phosphorylates Yorkie/YAP on HXRXXS motifs [PMID:35659869].
    action: ACCEPT
    reason: >-
      This is the core molecular activity of a Warts/LATS kinase, and the catalytic residues
      are retained. Unlike Capsaspora coWts, whose TreeGrafter placement is in the
      Rho-effector kinase family, the S. rosetta protein sits in the LATS clade, so the
      family-level inference is sound. Kinase activity has not been assayed for the
      S. rosetta protein.
    supported_by:
    - reference_id: file:SALRS/warts/warts-uniprot.txt
      record_section: ["DR:PANTHER"]
      supporting_text: PANTHER; PTHR24356:SF418; SERINE_THREONINE-PROTEIN KINASE WARTS; 1.
    - reference_id: file:SALRS/warts/warts-uniprot.txt
      record_section: ["DR:PROSITE"]
      supporting_text: PROSITE; PS00108; PROTEIN_KINASE_ST; 1.
    - reference_id: PMID:35659869
      supporting_text: >-
        In mammals and in Drosophila, YAP/TAZ/Yorkie is regulated by cytoplasmic
        sequestration in response to phosphorylation of HXRXXS motifs by the LATS/Warts
        kinases (Zheng and Pan, 2019).
- term:
    id: GO:0005524
    label: ATP binding
  evidence_type: IEA
  original_reference_id: GO_REF:0000120
  qualifier: enables
  supporting_entities:
  - InterPro:IPR000719
  - InterPro:IPR000961
  - InterPro:IPR017441
  - UniRule:UR001503341
  review:
    summary: >-
      Domain-based assignment from the protein kinase domain and its ATP-binding signature
      (K485).
    action: ACCEPT
    reason: >-
      Kinase domain with the conserved ATP-binding lysine; ATP binding is required for the
      predicted catalytic activity. Sound domain-level inference, not measured.
    supported_by:
    - reference_id: file:SALRS/warts/warts-uniprot.txt
      record_section: ["DR:InterPro"]
      supporting_text: InterPro; IPR017441; Protein_kinase_ATP_BS.
- term:
    id: GO:0005737
    label: cytoplasm
  evidence_type: IEA
  original_reference_id: GO_REF:0000120
  qualifier: located_in
  supporting_entities:
  - ARBA:ARBA00026971
  - UniProtKB-SubCell:SL-0086
  review:
    summary: >-
      ARBA rule and UniProt subcellular-location keyword. Warts/LATS kinases act in the
      cytoplasm, where they retain phosphorylated Yorkie/YAP. No localization data exist for
      the S. rosetta protein.
    action: ACCEPT
    reason: >-
      Cytoplasm is the expected compartment for a Warts/LATS kinase, and the term is broad
      enough to be safe without direct data. Accepted as a homology-based location.
    supported_by:
    - reference_id: file:SALRS/warts/warts-uniprot.txt
      record_section: ["CC:SUBCELLULAR LOCATION"]
      supporting_text: 'SUBCELLULAR LOCATION: Cytoplasm'
    - reference_id: PMID:35659869
      supporting_text: >-
        In mammals and in Drosophila, YAP/TAZ/Yorkie is regulated by cytoplasmic
        sequestration in response to phosphorylation of HXRXXS motifs by the LATS/Warts
        kinases (Zheng and Pan, 2019).
- term:
    id: GO:0016301
    label: kinase activity
  evidence_type: IEA
  original_reference_id: GO_REF:0000104
  qualifier: enables
  supporting_entities:
  - UniRule:UR000416695
  review:
    summary: UniRule assignment of the general kinase activity parent term.
    action: KEEP_AS_NON_CORE
    reason: >-
      True but redundant with the more specific protein serine/threonine kinase activity
      annotation.
    supported_by:
    - reference_id: file:SALRS/warts/warts-uniprot.txt
      record_section: ["DR:PROSITE"]
      supporting_text: PROSITE; PS50011; PROTEIN_KINASE_DOM; 1.
- term:
    id: GO:0016740
    label: transferase activity
  evidence_type: IEA
  original_reference_id: GO_REF:0000104
  qualifier: enables
  supporting_entities:
  - UniRule:UR000416695
  review:
    summary: UniRule assignment of the very general transferase activity term.
    action: KEEP_AS_NON_CORE
    reason: >-
      True (a kinase transfers phosphate) but too general to be informative. Kept as a
      non-core parent of protein serine/threonine kinase activity.
    supported_by:
    - reference_id: file:SALRS/warts/warts-uniprot.txt
      record_section: ["DR:PROSITE"]
      supporting_text: PROSITE; PS50011; PROTEIN_KINASE_DOM; 1.
- term:
    id: GO:0035329
    label: hippo signaling
  evidence_type: IEA
  original_reference_id: GO_REF:0000118
  qualifier: involved_in
  supporting_entities:
  - PANTHER:PTN001220369
  review:
    summary: >-
      TreeGrafter transfer of the IBD placed at PTN002390470 (Warts/LATS,
      "Metazoa-Choanoflagellida"), supported by experimental annotations on Drosophila wts,
      human LATS1/2 and mouse Lats. In S. rosetta, Warts and Yorkie regulate several
      extracellular matrix genes [PMID:41037400], the Yorkie homolog carries four HXRXXS
      Warts motifs [PMID:38729842], and in Capsaspora the Warts homolog restrains nuclear
      entry of the Yorkie homolog [PMID:38517944].
    action: ACCEPT
    reason: >-
      Warts/LATS performs a step of the hippo signaling cascade (phosphorylating Yorkie),
      and the IBD node includes choanoflagellates. That placement is consistent with
      Capsaspora evidence that the Hippo-Warts-Yorkie cascade predates animals, so the
      family-level inference is sound and the term describes the core role. Caveats: no
      S. rosetta experiment shows Warts phosphorylating Yorkie or controlling its
      localization; hippo knockout does not phenocopy the warts rosette-size phenotype;
      and the predicted TEAD-binding region of S. rosetta Yorkie is poorly conserved. A NEW
      IMP is not added: the knockout phenotypes (rosette size, proliferation) are downstream
      outcomes and do not test participation in the cascade itself.
    supported_by:
    - reference_id: PMID:41037400
      supporting_text: >-
        RNA sequencing revealed that Warts and Yorkie regulated several extracellular matrix
        genes involved in multicellularity (including couscous)
    - reference_id: PMID:38729842
      supporting_text: >-
        srYki has 4 putative Warts phosphorylation sites
    - reference_id: PMID:38517944
      supporting_text: >-
        Together, these results show that the Capsaspora Hippo kinase cascade regulates
        coYki by cytoplasmic sequestration, indicating a premetazoan origin of this
        regulatory activity of the Hippo pathway.
    propagation_review:
      root_cause: NO_FAILURE_CORE
      source_entities:
      - source_id: PANTHER:PTN002390470
        source_label: Warts/LATS, Metazoa-Choanoflagellida node
        source_status: SUPPORTS_TRANSFER
        comment: >-
          IBD supported by fly wts and mammalian LATS1/2; the cascade is shown to predate
          animals in Capsaspora, so inheritance at the Choanozoa node is plausible.
- term:
    id: GO:0035556
    label: intracellular signal transduction
  evidence_type: IEA
  original_reference_id: GO_REF:0000118
  qualifier: involved_in
  supporting_entities:
  - PANTHER:PTN001220369
  review:
    summary: >-
      TreeGrafter transfer of a general signalling term from the PTHR24356 tree; parent of
      hippo signaling.
    action: KEEP_AS_NON_CORE
    reason: >-
      True for a signalling kinase but less informative than hippo signaling, which is also
      annotated. Kept as a non-core parent.
    supported_by:
    - reference_id: file:SALRS/warts/warts-uniprot.txt
      record_section: ["DR:PANTHER"]
      supporting_text: PANTHER; PTHR24356:SF418; SERINE_THREONINE-PROTEIN KINASE WARTS; 1.
- term:
    id: GO:0043065
    label: positive regulation of apoptotic process
  evidence_type: IEA
  original_reference_id: GO_REF:0000118
  qualifier: involved_in
  supporting_entities:
  - PANTHER:PTN001220369
  review:
    summary: >-
      TreeGrafter transfer of an IBD at PTN002390470 whose experimental support is
      Drosophila wts (FBgn0011739), where Warts promotes apoptosis by inactivating Yorkie and
      so lowering expression of the caspase inhibitor diap1. No cell death has been examined
      in S. rosetta warts knockouts; the enlarged rosettes were described with a slower,
      not faster, proliferation rate [DOI:10.1101/2024.07.13.603360].
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      The term is permitted for opisthokonts, so it is not a taxon violation, and a role
      in cell survival in a choanoflagellate is not impossible. But the donor biology is
      Yorkie-dependent control of an animal anti-apoptotic programme in growing tissue.
      There is no evidence that choanoflagellate Warts or Yorkie regulate apoptosis, and
      the Yorkie homolog's TEAD-binding region is poorly conserved, so transfer of this
      tissue-growth-control output is unsupported. Not removed, because no data contradict
      it.
    supported_by:
    - reference_id: PMID:38729842
      supporting_text: >-
        The degree to which choanoflagellate Yorkie orthologs interact with Sd/TEAD proteins
        is therefore currently unclear
    - reference_id: DOI:10.1101/2024.07.13.603360
      supporting_text: >-
        down proliferation in S. rosetta, which is the opposite of their animal
        loss-of-function phenotype
    propagation_review:
      root_cause: PROPAGATION_BAD
      failure_modes:
      - CONTEXT_OR_TISSUE_MISMATCH
      source_entities:
      - source_id: PANTHER:PTN002390470
        source_label: Warts/LATS, Metazoa-Choanoflagellida node
        source_status: SUPPORTS_SOURCE_BUT_NOT_TARGET
        comment: >-
          Seeded by Drosophila wts tissue-growth and apoptosis phenotypes; no
          choanoflagellate data on apoptosis.
- term:
    id: GO:0046620
    label: regulation of organ growth
  evidence_type: IEA
  original_reference_id: GO_REF:0000118
  qualifier: involved_in
  supporting_entities:
  - PANTHER:PTN001220369
  review:
    summary: >-
      TreeGrafter transfer of an IBD at PTN002390470 seeded by mouse Lats2 (MGI:1354386).
      GO defines the term as modulating "growth of an organ of an organism"; it is a child
      of regulation of developmental growth and regulation of multicellular organismal
      process. S. rosetta is a choanoflagellate that lives as single cells or as clonal
      rosettes of a few dozen cells; it has no organs. Its warts knockout does enlarge
      rosettes [DOI:10.1101/2024.07.13.603360], but a rosette is not an organ.
    action: REMOVE
    reason: >-
      An organ is a multicellular anatomical structure of an animal or plant body, which
      choanoflagellates do not have, so the term cannot be true of this protein whatever its
      function. The source annotation is sound for mice. The fault is that an organ-level
      outcome term was placed at a node ("Metazoa-Choanoflagellida") that includes
      unicellular organisms, while the GO term's taxon constraints exclude only bacteria,
      archaea and two yeasts. The rosette-size phenotype is the closest S. rosetta
      counterpart, but no GO term fits it (there is no rosette term; see the NTR drafted in
      the rosetteless review). It is also a downstream outcome of altered extracellular
      matrix gene expression, not work done by Warts, so no replacement process term is
      proposed.
    supported_by:
    - reference_id: DOI:10.1101/2024.07.13.603360
      supporting_text: >-
        warts pac1 cells grew into giant rosettes containing about twice as many cells as
        wild-type ones (21.1 ± 4.4 versus 10.9 ± 3.8 cells per rosette, respectively)
    - reference_id: PMID:41037400
      supporting_text: >-
        suggesting that Hippo signaling regulates multicellular size in choanoflagellates by
        modulating matrix secretion
    propagation_review:
      root_cause: PROPAGATION_BAD
      failure_modes:
      - LINEAGE_OR_TAXON_MISMATCH
      source_entities:
      - source_id: PANTHER:PTN002390470
        source_label: Warts/LATS, Metazoa-Choanoflagellida node
        source_status: SUPPORTS_SOURCE_BUT_NOT_TARGET
        comment: >-
          Organ-growth IBD seeded by mouse Lats2; valid for animals, but the node spans
          choanoflagellates, which have no organs.
      - source_id: PANTHER:PTN001220369
        source_label: M. brevicollis Warts leaf
        source_status: NOT_RELEVANT
        comment: Graft point only; M. brevicollis also receives this IBA and has no organs either.
- term:
    id: GO:0071944
    label: cell periphery
  evidence_type: IEA
  original_reference_id: GO_REF:0000117
  qualifier: located_in
  supporting_entities:
  - ARBA:ARBA00027443
  review:
    summary: >-
      ARBA machine-learning rule. In animals Warts/LATS is recruited to the plasma membrane
      by Mats/MOB1 and upstream adaptors during activation. The localization of S. rosetta
      Warts has not been examined.
    action: UNDECIDED
    reason: >-
      A membrane-proximal pool is plausible for a Warts/LATS kinase, but there are no
      S. rosetta data for or against it, and the rule is not specific to the LATS clade.
    supported_by:
    - reference_id: file:SALRS/warts/warts-uniprot.txt
      record_section: ["CC:SUBCELLULAR LOCATION"]
      supporting_text: 'SUBCELLULAR LOCATION: Cytoplasm'
core_functions:
- description: >-
    Warts/LATS-family serine/threonine protein kinase of the S. rosetta Hippo pathway,
    inferred from its LATS-clade family placement to restrain the Yorkie homolog, which
    carries four Warts-consensus HXRXXS motifs. In S. rosetta, Warts and Yorkie both
    influence extracellular matrix gene expression, including couscous. Loss of Warts
    roughly doubles the number of cells per rosette, with an enlarged and more branched
    matrix core, and slows cell proliferation. Kinase activity, Yorkie phosphorylation and
    activation by Hippo have not been measured.
  molecular_function:
    id: GO:0004674
    label: protein serine/threonine kinase activity
  directly_involved_in:
  - id: GO:0035329
    label: hippo signaling
  locations:
  - id: GO:0005737
    label: cytoplasm
  supported_by:
  - reference_id: file:SALRS/warts/warts-uniprot.txt
    record_section: ["DR:PANTHER"]
    supporting_text: PANTHER; PTHR24356:SF418; SERINE_THREONINE-PROTEIN KINASE WARTS; 1.
  - reference_id: PMID:41037400
    supporting_text: >-
      RNA sequencing revealed that Warts and Yorkie regulated several extracellular matrix
      genes involved in multicellularity (including couscous)
  - reference_id: DOI:10.1101/2024.07.13.603360
    supporting_text: >-
      that ECM core appeared larger and with a more conspicuously branched geometry in
      warts pac1
suggested_questions:
- question: >-
    Does S. rosetta Warts phosphorylate the Yorkie homolog on its four HXRXXS motifs, and is
    Yorkie more nuclear in warts knockout cells?
- question: >-
    Are the enlarged rosettes of warts knockouts caused by Yorkie? yorkie knockout rosettes
    are of normal size, so a warts yorkie double knockout is the key epistasis test.
- question: >-
    Why does hippo knockout not phenocopy the warts rosette-size phenotype? Which kinases
    activate Warts in S. rosetta?
- question: >-
    Do larger warts knockout rosettes arise from more cell divisions before rosette
    release, reduced cell loss, or altered matrix secretion (e.g. via couscous)?
- question: >-
    Should GO add taxon constraints restricting organ-level growth terms such as
    regulation of organ growth (GO:0046620) to taxa with organs, or should PAINT place the
    organ-growth IBD at a metazoan rather than a Metazoa-plus-choanoflagellate node?
suggested_experiments:
- hypothesis: S. rosetta Warts is an active kinase that phosphorylates Yorkie at HXRXXS motifs.
  description: >-
    In vitro kinase assay of immunopurified wild-type versus kinase-dead (K485A or D579A)
    Warts on recombinant Yorkie and a four-site S-to-A Yorkie mutant, plus Phos-tag
    immunoblots of Yorkie in wild-type and warts knockout cells.
  experiment_type: biochemical kinase assay
- hypothesis: The warts rosette-size phenotype is mediated by Yorkie.
  description: >-
    Generate warts yorkie double knockouts with the selection-based cassette method and
    count cells per rosette; express a non-phosphorylatable Yorkie in wild-type cells to
    test whether it phenocopies warts loss.
  experiment_type: genetic epistasis
- hypothesis: Warts kinase activity is required to limit rosette size.
  description: >-
    Complement warts knockout cells with wild-type or kinase-dead Warts and score cells
    per rosette, ECM core morphology and doubling time.
  experiment_type: genetic complementation
references:
- id: GO_REF:0000002
  title: Gene Ontology annotation through association of InterPro records with GO
    terms
  findings: []
- id: GO_REF:0000104
  title: Electronic Gene Ontology annotations created by transferring manual GO annotations
    between related proteins based on shared sequence features
  findings: []
- id: GO_REF:0000117
  title: Electronic Gene Ontology annotations created by ARBA machine learning models
  findings: []
- id: GO_REF:0000118
  title: TreeGrafter-generated GO annotations
  findings: []
- id: GO_REF:0000120
  title: Combined Automated Annotation using Multiple IEA Methods
  findings: []
- id: file:SALRS/warts/warts-uniprot.txt
  title: UniProt record for warts (F2U943)
  findings:
  - statement: >-
      PANTHER classifies F2U943 in the Warts subfamily of PTHR24356, with human LATS1/2.
    record_section: ["DR:PANTHER"]
    supporting_text: PANTHER; PTHR24356:SF418; SERINE_THREONINE-PROTEIN KINASE WARTS; 1.
- id: DOI:10.1101/2024.07.13.603360
  title: A fast and robust gene knockout method for <i>Salpingoeca rosetta</i> informs the
    genetics of choanoflagellate multicellular development
  reference_review:
    relevance: HIGH
    correctness: VERIFIED
    review_notes: >-
      bioRxiv preprint (July 2024), full text cached from the PDF. Reports CRISPR knockout of
      the S. rosetta Hippo, Warts and Yorkie homologs (two clones each), growth curves,
      rosette-size counts and ECM imaging of warts knockout rosettes. The cached version
      does not give locus IDs; PTSG_04961 as the warts locus was supplied from the
      preprint's gRNA-design sentence, which is not in this cached version. F2U943 is the
      only S. rosetta protein in the PANTHER Warts subfamily, which supports the mapping.
      Published as PMID:41037400.
  findings:
  - statement: warts knockout rosettes contain about twice as many cells as wild type.
    supporting_text: >-
      warts pac1 cells grew into giant rosettes containing about twice as many cells as
      wild-type ones (21.1 ± 4.4 versus 10.9 ± 3.8 cells per rosette, respectively)
  - statement: warts knockout rosettes reach up to about 60 cells.
    supporting_text: >-
      as many as 60 cells, while their wild type counterparts did not exceed 25 cells
  - statement: warts knockout rosettes have a larger, more branched ECM core.
    supporting_text: >-
      that ECM core appeared larger and with a more conspicuously branched geometry in
      warts pac1
  - statement: warts knockout cells proliferate more slowly than wild type.
    supporting_text: >-
      On the other hand, hippopac1 and warts pac1 KO clones proliferated markedly slower
  - statement: All knockout clones still develop into rosettes.
    supporting_text: >-
      all six KO clones reliably developed into rosettes, as did wild-type cells
  - statement: The authors identify warts as a genetic regulator of rosette size.
    supporting_text: >-
      These observations pinpoint warts as a genetic regulator of S. rosetta rosette size
- id: PMID:41037400
  title: A selection-based knockout approach for a choanoflagellate reveals regulation
    of multicellular development by Hippo signaling.
  full_text_unavailable: true
  reference_review:
    relevance: HIGH
    correctness: VERIFIED
    review_notes: >-
      Published version of the preprint; abstract only cached. Adds RNA-seq showing that
      Warts and Yorkie regulate extracellular matrix genes including couscous.
  findings:
  - statement: warts knockout rosettes are larger than wild type.
    supporting_text: >-
      Interestingly, warts-KO rosettes were consistently larger than their wild-type
      counterparts.
  - statement: Warts and Yorkie regulate extracellular matrix genes, including couscous.
    supporting_text: >-
      RNA sequencing revealed that Warts and Yorkie regulated several extracellular matrix
      genes involved in multicellularity (including couscous)
- id: PMID:35659869
  title: Genome editing in the unicellular holozoan Capsaspora owczarzaki suggests a
    premetazoan role for the Hippo pathway in multicellular morphogenesis.
  reference_review:
    relevance: LOW
    correctness: VERIFIED
    review_notes: Background on the Warts/LATS mechanism (HXRXXS phosphorylation of Yorkie/YAP).
  findings:
  - statement: Warts/LATS phosphorylates Yorkie/YAP/TAZ on HXRXXS motifs.
    supporting_text: >-
      In mammals and in Drosophila, YAP/TAZ/Yorkie is regulated by cytoplasmic
      sequestration in response to phosphorylation of HXRXXS motifs by the LATS/Warts
      kinases (Zheng and Pan, 2019).
- id: PMID:38517944
  title: The Hippo kinase cascade regulates a contractile cell behavior and cell density
    in a close unicellular relative of animals.
  reference_review:
    relevance: MEDIUM
    correctness: VERIFIED
    review_notes: >-
      Capsaspora coWts knockout; shows a premetazoan Warts restraining Yorkie localization.
      Not about S. rosetta.
  findings:
  - statement: The Capsaspora Hippo kinase cascade keeps the Yorkie homolog cytoplasmic.
    supporting_text: >-
      Together, these results show that the Capsaspora Hippo kinase cascade regulates
      coYki by cytoplasmic sequestration, indicating a premetazoan origin of this
      regulatory activity of the Hippo pathway.
- id: PMID:22832104
  title: Premetazoan origin of the hippo signaling pathway.
  reference_review:
    relevance: LOW
    correctness: VERIFIED
    review_notes: Comparative genomics; Wts homologs present across opisthokonts.
  findings:
  - statement: Wts homologs are present across opisthokonts.
    supporting_text: >-
      Likewise, Wts homologues are present along all opisthokonts, except maybe for the
      ichthyosporeans, where the incompleteness of genome data makes it difficult to
      ensure its absence.
- id: PMID:38729842
  title: 'Assembling a Hippo: the evolutionary emergence of an animal developmental
    signaling pathway.'
  reference_review:
    relevance: MEDIUM
    correctness: VERIFIED
    review_notes: >-
      Review; describes the S. rosetta Yorkie homolog (four putative Warts sites, poorly
      conserved TEAD-binding region), relevant to the predicted Warts substrate.
  findings:
  - statement: S. rosetta Yorkie has four putative Warts phosphorylation sites.
    supporting_text: srYki has 4 putative Warts phosphorylation sites
  - statement: It is unclear whether choanoflagellate Yorkie homologs bind Sd/TEAD.
    supporting_text: >-
      The degree to which choanoflagellate Yorkie orthologs interact with Sd/TEAD proteins
      is therefore currently unclear
