Cdc13 (p56cdc13) is the major mitotic B-type cyclin (cyclin AB subfamily) of the fission yeast Schizosaccharomyces pombe. It is the essential regulatory partner of the cyclin-dependent kinase Cdc2 (CDK1); together the Cdc13-Cdc2 complex constitutes M-phase-promoting factor (MPF), the principal driver of mitotic entry and progression. Cdc13 levels rise steadily through G2 and the complex is activated at the G2/M transition (requiring Cdc25 and CAK/Thr167 phosphorylation of Cdc2), then Cdc13 is abruptly destroyed at anaphase by APC/C-mediated, destruction-box-dependent proteolysis, behaving as a classic cyclin. Cdc13 binding also dictates the catalytic properties, substrate selection and subcellular localization of Cdc2: the complex concentrates in the nucleus, is enriched at the spindle pole body (SPB, the centrosome equivalent) in G2 via the cyclin hydrophobic patch and a Polo-kinase-dependent mechanism, and decorates the mitotic spindle and spindle midzone during mitosis. Cdc13-Cdc2 also associates stably with ORC-bound replication origins, enforcing the dependence of S phase on an intervening mitosis and preventing re-replication, and it contributes to the mitotic DNA damage response, chromosome bi-orientation and merotelic-attachment correction. A single Cdc13-Cdc2 complex is sufficient to drive both the mitotic and the meiotic cell cycle; in meiosis the stability of Cdc13 is specifically controlled (stabilized by Mes1 between meiosis I and II to permit MII, then degraded by the Mfr1-activated APC/C at the end of meiosis II to license sporulation). Cdc13 is negatively regulated during G1 by the CDK inhibitor Rum1, which promotes its proteolysis.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0005815
microtubule organizing center
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Phylogenetic (IBA) annotation to the microtubule organizing center. Cdc13-Cdc2 is genuinely enriched at the spindle pole body (the fungal MTOC/centrosome equivalent) in G2 and mitosis, so the term is correct, though the more specific experimentally supported terms (mitotic spindle pole body) are preferred.
Reason: Localization to the SPB/MTOC is well supported experimentally but is a context for the core kinase-regulator function rather than a core function itself; a more specific SPB term is available.
Supporting Evidence:
PMID:32084401
the hydrophobic patch targets Cdc13 to the yeast centrosome equivalent, the spindle pole body (SPB)
|
|
GO:0000307
cyclin-dependent protein kinase holoenzyme complex
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Cdc13 is a B-type cyclin that forms a stable complex with the catalytic subunit Cdc2 (CDK1); this complex is the cyclin-dependent protein kinase holoenzyme. The IBA assignment is strongly supported by direct experimental evidence.
Reason: Direct biochemical evidence shows Cdc13 forms a stable kinase-active complex with Cdc2, consistent with the CDK holoenzyme complex.
Supporting Evidence:
PMID:2569363
The products of the cdc13+ and cdc2+ genes form a stable complex that displays protein kinase activity in vitro.
|
|
GO:0016538
cyclin-dependent protein serine/threonine kinase regulator activity
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Core molecular function. As the mitotic B-type cyclin, Cdc13 binds Cdc2 and regulates both its catalytic activity and localization, the defining function of a cyclin. Strongly supported by both phylogenetic inference and direct experiment.
Reason: The cyclin regulatory function of Cdc13 toward the Cdc2 CDK is the central, well-established function of this gene product.
Supporting Evidence:
PMID:2569363
These observations suggest that the cdc13+-encoded cyclin acts to regulate both the catalytic properties and the localization of the protein kinase of which it is a subunit.
|
|
GO:0007089
traversing start control point of mitotic cell cycle
|
IBA
GO_REF:0000033 |
MARK AS OVER ANNOTATED |
Summary: IBA annotation to passage through Start (G1/S commitment). Cdc13 is the mitotic cyclin whose endogenous role is the G2/M transition; in wild-type cells Start and G1/S are executed by the G1/S cyclins Cig1, Cig2 and Puc1. Although an engineered single Cdc13-Cdc2 complex can drive S phase when it is the only cyclin, this does not reflect the normal Start function of Cdc13 and is best treated as an over-annotation for the endogenous protein.
Reason: The native function of Cdc13 is at G2/M, not at Start; G1/S commitment is normally carried out by other cyclins, so the phylogenetically transferred Start annotation overstates the endogenous role.
Supporting Evidence:
PMID:32084401
Although, in wild-type cells, the G1/S cyclins Cig1 and Cig2 are expressed in G1 to execute DNA replication, in this situation, Cdc13 is expressed in G1 and compensates for their loss
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|
GO:0005634
nucleus
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: Electronic annotation to nucleus from UniProt subcellular location mapping. Cdc13 is a well-established nuclear protein (with the Cdc2 complex localized to a nuclear domain distinct from chromatin), so this is correct and redundant with multiple experimental nucleus annotations below.
Reason: Nuclear localization is directly demonstrated experimentally.
Supporting Evidence:
PMID:2534559
both cdc13 and cdc2 are nuclear proteins in S. pombe.
|
|
GO:0005816
spindle pole body
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: Electronic annotation to spindle pole body from UniProt mapping. Cdc13-Cdc2 is experimentally enriched at the SPB in G2 and mitosis; the mitotic spindle pole body term (GO:0044732) is more specific and also annotated experimentally below.
Reason: SPB localization is directly supported by experimental imaging.
Supporting Evidence:
PMID:11683390
Cdc2-YFP and cdc13-YFP are highly enriched on the spindle pole body of cells in late G2 or arrested at S phase.
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|
GO:0016538
cyclin-dependent protein serine/threonine kinase regulator activity
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Automated InterPro-based annotation of the core cyclin regulator activity. This duplicates the well-supported IBA/experimental molecular function and is accepted.
Reason: Redundant with the experimentally supported core kinase-regulator function.
Supporting Evidence:
PMID:2569363
These observations suggest that the cdc13+-encoded cyclin acts to regulate both the catalytic properties and the localization of the protein kinase of which it is a subunit.
|
|
GO:0044772
mitotic cell cycle phase transition
|
IEA
GO_REF:0000002 |
MODIFY |
Summary: Automated InterPro annotation to mitotic cell cycle phase transition. This is correct but general; Cdc13 specifically drives the G2/M transition, which is captured by the more precise experimental annotations (GO:0010389, GO:0010971).
Reason: The general term is correct but a more specific term reflecting the G2/M role is preferred and is supported experimentally.
Proposed replacements:
regulation of G2/M transition of mitotic cell cycle
Supporting Evidence:
PMID:2908246
required for the control of the G2 to M transition
|
|
GO:0005515
protein binding
|
IPI
PMID:9303310 p25rum1 promotes proteolysis of the mitotic B-cyclin p56cdc1... |
MARK AS OVER ANNOTATED |
Summary: IPI annotation from the Cdc13-Rum1 interaction. Rum1 is the CDK inhibitor that binds the Cdc13-Cdc2 complex and promotes Cdc13 proteolysis during G1. The bare protein binding term is uninformative per curation guidelines; the biology (being subject to regulation by the inhibitor Rum1) is captured by the kinase-regulator function and the G1 proteolysis biology rather than by GO:0005515.
Reason: Bare protein binding is uninformative; the Rum1 interaction is better represented as part of Cdc13 regulation, not as an independent molecular function.
Supporting Evidence:
PMID:9303310
p25rum1 associates with the CDK p34cdc2/p56cdc13 during G1 in normally cycling cells and is required for the rapid proteolysis of p56cdc13
|
|
GO:0005515
protein binding
|
IPI
PMID:9472012 The Cdk inhibitors p25rum1 and p40SIC1 are functional homolo... |
MARK AS OVER ANNOTATED |
Summary: IPI from the Rum1/SIC1 study, again reflecting binding of the Rum1 CDK inhibitor to the B-cyclin Cdc2 complex. Bare protein binding is uninformative.
Reason: Uninformative bare protein binding; the interaction is between the CDK inhibitor and the Cdc13-Cdc2 complex.
Supporting Evidence:
PMID:9472012
p25rum1 and p40SIC1 are specific inhibitors of p34(cdc2/CDC28) kinase complexes with B-type cyclins
|
|
GO:0005515
protein binding
|
IPI
PMID:9614176 Cyclin B proteolysis and the cyclin-dependent kinase inhibit... |
MARK AS OVER ANNOTATED |
Summary: IPI from the pheromone-induced G1 arrest study (Rum1-dependent Cdc13 proteolysis). Bare protein binding is uninformative and is not retained as a core function.
Reason: Uninformative bare protein binding term.
Supporting Evidence:
PMID:9614176
Cyclin B proteolysis and the cyclin-dependent kinase inhibitor rum1p are required for pheromone-induced G1 arrest in fission yeast.
|
|
GO:0140602
nucleolar peripheral inclusion body
|
IDA
PMID:37128864 CDK actively contributes to establishment of the stationary ... |
KEEP AS NON CORE |
Summary: IDA localization of Cdc2/CDK to a nucleolar inclusion compartment during the stationary-phase/CDK study. This reflects a stress/quiescence-associated relocalization rather than a site of mitotic function.
Reason: A condition-specific (stationary phase) localization, not part of the core mitotic function.
Supporting Evidence:
PMID:37128864
Cdc2 accumulates in the nucleolus.
|
|
GO:0005654
nucleoplasm
|
IDA
PMID:1699136 Distinct nuclear and spindle pole body population of cyclin-... |
ACCEPT |
Summary: IDA to nucleoplasm consistent with the nuclear (non-SPB) population of the Cdc13-Cdc2 cyclin. Supported by direct localization of two distinct nuclear populations of Cdc13.
Reason: Direct evidence for a nucleoplasmic population of Cdc13.
Supporting Evidence:
PMID:1699136
the presence of two spatially distinct cdc13 cyclin populations in the nucleus of S. pombe, one of which is associated with the mitotic spindle poles
|
|
GO:0044773
mitotic DNA damage checkpoint signaling
|
EXP
PMID:12023299 Cdc2-cyclin B kinase activity links Crb2 and Rqh1-topoisomer... |
KEEP AS NON CORE |
Summary: Experimental evidence that Cdc2-cyclin B kinase activity influences recombinational repair of DSBs in G2 and links the checkpoint protein Crb2 to Top3/Rqh1 function. This is a genuine but non-core (process-specific) role of the Cdc13-Cdc2 complex.
Reason: Cdc13-Cdc2 contributes to the G2 DNA damage response, but this is a downstream role distinct from its core mitotic-entry function.
Supporting Evidence:
PMID:12023299
the major Schizosaccharomyces pombe CDK, Cdc2-cyclin B, influences recombinational repair of radiation-induced DSBs during the G(2) phase at two distinct stages
|
|
GO:0071957
old mitotic spindle pole body
|
IDA
PMID:1699136 Distinct nuclear and spindle pole body population of cyclin-... |
ACCEPT |
Summary: IDA to the old (pre-existing) SPB, consistent with the SPB-associated population of Cdc13. A fine-grained localization within the broader SPB localization.
Reason: Direct evidence for SPB-associated Cdc13; specific SPB sub-localization.
Supporting Evidence:
PMID:1699136
the presence of two spatially distinct cdc13 cyclin populations in the nucleus of S. pombe, one of which is associated with the mitotic spindle poles
|
|
GO:0071958
new mitotic spindle pole body
|
IDA
PMID:1699136 Distinct nuclear and spindle pole body population of cyclin-... |
ACCEPT |
Summary: IDA to the new (newly duplicated) SPB, complementary to the old-SPB annotation. Both reflect the experimentally observed SPB-associated Cdc13 population.
Reason: Direct evidence for SPB-associated Cdc13; specific SPB sub-localization.
Supporting Evidence:
PMID:1699136
the presence of two spatially distinct cdc13 cyclin populations in the nucleus of S. pombe, one of which is associated with the mitotic spindle poles
|
|
GO:0005515
protein binding
|
IPI
PMID:1655416 Phosphorylation at Thr167 is required for Schizosaccharomyce... |
MARK AS OVER ANNOTATED |
Summary: IPI to cdc2, reflecting the Cdc13-Cdc2 complex (Thr167 phosphorylation of Cdc2 is required for kinase activity and for association with cyclin B). Bare protein binding is uninformative; the Cdc2 interaction is the substance of the core kinase-regulator function and is captured by GO:0016538.
Reason: Uninformative bare protein binding; the Cdc13-Cdc2 interaction is already represented by the cyclin kinase-regulator molecular function.
Supporting Evidence:
PMID:1655416
Phosphorylation at Thr167 is required for Schizosaccharomyces pombe p34cdc2 function.
|
|
GO:0140602
nucleolar peripheral inclusion body
|
IDA
PMID:33176152 Acute Heat Stress Leads to Reversible Aggregation of Nuclear... |
KEEP AS NON CORE |
Summary: IDA localization to nucleolar ring/inclusion structures formed upon acute heat stress, which reversibly sequester cell-cycle regulators. This is a stress-induced aggregation phenomenon, not a constitutive functional site.
Reason: Heat-stress-induced reversible aggregation; condition-specific localization, not a core functional compartment.
Supporting Evidence:
PMID:33176152
NuRs sequester essential factors required for nuclear mRNA metabolism and nuclear pore complex function, as well as cell-cycle regulators.
|
|
GO:0010971
positive regulation of G2/M transition of mitotic cell cycle
|
IMP
PMID:32084401 The Hydrophobic Patch Directs Cyclin B to Centrosomes to Pro... |
ACCEPT |
Summary: IMP showing that the Cdc13 hydrophobic patch (and SPB targeting) is required for the onset of mitosis and that hydrophobic-patch mutant cells arrest in G2. This directly supports a positive role in driving the G2/M transition and is a core function.
Reason: Cdc13-Cdc2 is the principal positive driver of the G2/M transition; SPB-targeting mutants fail mitotic entry.
Supporting Evidence:
PMID:32084401
disruption of this motif prevents both centrosomal localization of Cdc13 and the onset of mitosis but does not prevent S phase
|
|
GO:0061575
cyclin-dependent protein serine/threonine kinase activator activity
|
IMP
PMID:32084401 The Hydrophobic Patch Directs Cyclin B to Centrosomes to Pro... |
ACCEPT |
Summary: IMP supporting that Cdc13 activates Cdc2/CDK for mitotic substrate phosphorylation, with SPB-localized Cdc13-CDK required to reach the high CDK activity needed for mitosis. Core molecular function as the activating cyclin subunit.
Reason: Cdc13 is the activating B-type cyclin of the mitotic CDK; loss of correct localization compromises global mitotic CDK phosphorylation.
Supporting Evidence:
PMID:32084401
Cdc13-CDK localization to the SPB is important for generating the highest levels of CDK activity in these compartments needed for mitosis
|
|
GO:0044732
mitotic spindle pole body
|
IMP
PMID:32084401 The Hydrophobic Patch Directs Cyclin B to Centrosomes to Pro... |
ACCEPT |
Summary: IMP localization to the mitotic SPB; the hydrophobic patch targets Cdc13 to the SPB in G2, and this localization is required for mitotic entry. Well supported.
Reason: SPB localization of Cdc13-CDK is directly demonstrated and functionally required.
Supporting Evidence:
PMID:32084401
the hydrophobic patch targets Cdc13 to the yeast centrosome equivalent, the spindle pole body (SPB)
|
|
GO:0044732
mitotic spindle pole body
|
EXP
PMID:32084401 The Hydrophobic Patch Directs Cyclin B to Centrosomes to Pro... |
ACCEPT |
Summary: EXP localization to the mitotic SPB (duplicate of the IMP annotation from the same study). Cdc13 is enriched at the SPB in G2 and decorates the mitotic spindle.
Reason: Direct experimental SPB localization of Cdc13.
Supporting Evidence:
PMID:32084401
Wild-type Cdc13 is found in the nucleus, is visibly enriched at the SPB in G2, and decorates the mitotic spindle during mitosis
|
|
GO:0140429
positive regulation of mitotic sister chromatid biorientation
|
EXP
PMID:20739936 Phosphorylation of the CPC by Cdk1 promotes chromosome bi-or... |
KEEP AS NON CORE |
Summary: EXP evidence that Cdk1 (Cdc2)-cyclin B phosphorylates the chromosomal passenger complex (Survivin) to promote chromosome bi-orientation. A genuine downstream mitotic process role of Cdc13-Cdc2.
Reason: Bi-orientation control is a real role of the Cdc13-Cdc2 kinase but is downstream of its core mitotic-entry function.
Supporting Evidence:
PMID:20739936
Cdk1 (also known as Cdc2)-cyclin-B-dependent phosphorylation of Survivin
|
|
GO:0140013
meiotic nuclear division
|
IMP
PMID:25891897 A single cyclin-CDK complex is sufficient for both mitotic a... |
ACCEPT |
Summary: IMP showing Cdc13 is required for the meiosis I and meiosis II nuclear divisions; a single Cdc13-Cdc2 complex is sufficient to drive the meiotic cell cycle. This is a genuine (not over-annotated) meiotic role of Cdc13.
Reason: Direct genetic evidence establishes Cdc13 as required for both meiotic nuclear divisions.
Supporting Evidence:
PMID:25891897
Cdc13 is required for meiosis I and II, and is not required for premeiotic S-phase unless this function can be achieved by very low Cdc13 protein levels
|
|
GO:0005634
nucleus
|
IDA
PMID:29123917 The telomere bouquet facilitates meiotic prophase progressio... |
ACCEPT |
Summary: IDA nuclear localization observed during meiotic prophase imaging of CDK1-Cdc13. Consistent with the established nuclear localization of Cdc13-Cdc2.
Reason: Direct imaging of nuclear/telomere-bouquet-associated Cdc13 in meiosis.
Supporting Evidence:
PMID:29123917
delayed accumulation of CDK1Cdc13 at the SPB
|
|
GO:0140445
chromosome, telomeric repeat region
|
EXP
PMID:29123917 The telomere bouquet facilitates meiotic prophase progressio... |
KEEP AS NON CORE |
Summary: EXP localization of CDK1-Cdc13 near telomeres during the meiotic telomere bouquet; heterochromatic/telomeric regions act as a platform that delivers CDK to the SPB. A meiosis-specific localization, genuine but non-core.
Reason: Telomere-proximal localization is a meiosis-prophase-specific context for CDK delivery to the SPB, not a core mitotic function site.
Supporting Evidence:
PMID:29123917
CDK1Cdc13 can localise near to the telomeres and therefore to the SPB during the later bouquet stage
|
|
GO:0005634
nucleus
|
EXP
PMID:11683390 In vivo localisation of fission yeast cyclin-dependent kinas... |
ACCEPT |
Summary: EXP nuclear localization from in vivo YFP imaging of Cdc13 during mitosis and meiosis. Strongly supported core localization.
Reason: Direct in vivo imaging confirms nuclear localization of Cdc13.
Supporting Evidence:
PMID:11683390
cdc13-YFP is enriched at the nuclear periphery before fluorescence disappears
|
|
GO:0034399
nuclear periphery
|
EXP
PMID:11683390 In vivo localisation of fission yeast cyclin-dependent kinas... |
KEEP AS NON CORE |
Summary: EXP localization to the nuclear periphery; Cdc13-YFP becomes enriched at the nuclear periphery in anaphase before being degraded. A genuine cell-cycle-stage-specific localization.
Reason: Nuclear-periphery enrichment is a transient late-mitotic localization, accepted as context rather than a core functional compartment.
Supporting Evidence:
PMID:11683390
cdc13-YFP is enriched at the nuclear periphery before fluorescence disappears
|
|
GO:0044732
mitotic spindle pole body
|
EXP
PMID:11683390 In vivo localisation of fission yeast cyclin-dependent kinas... |
ACCEPT |
Summary: EXP localization to the mitotic SPB from in vivo imaging; Cdc2-YFP and Cdc13-YFP are highly enriched on the SPB in late G2 and accumulate on SPBs and spindle in prophase/metaphase. Well supported.
Reason: Direct in vivo imaging of Cdc13 at the SPB across mitosis.
Supporting Evidence:
PMID:11683390
Cdc2-YFP and cdc13-YFP are highly enriched on the spindle pole body of cells in late G2 or arrested at S phase.
|
|
GO:0072686
mitotic spindle
|
EXP
PMID:11683390 In vivo localisation of fission yeast cyclin-dependent kinas... |
ACCEPT |
Summary: EXP localization to the mitotic spindle; Cdc13-Cdc2 accumulates on the spindle in prophase/metaphase and leaves the spindle before sister-chromatid separation.
Reason: Direct imaging of Cdc13 decorating the mitotic spindle.
Supporting Evidence:
PMID:11683390
In anaphase, the cdc2p/cdc13p complex leaves the spindle prior to sister chromatid separation
|
|
GO:0005515
protein binding
|
IPI
PMID:26131711 Two Distinct Cdc2 Pools Regulate Cell Cycle Progression and ... |
MARK AS OVER ANNOTATED |
Summary: IPI to cdc2 from the study of two Cdc2 pools in the DNA damage response. Bare protein binding is uninformative; the Cdc13-Cdc2 interaction is already represented by the core cyclin kinase-regulator function.
Reason: Uninformative bare protein binding; redundant with the Cdc2 kinase-regulator function.
Supporting Evidence:
PMID:26131711
Two Distinct Cdc2 Pools Regulate Cell Cycle Progression and the DNA Damage Response in the Fission Yeast S.pombe.
|
|
GO:0051447
negative regulation of meiotic cell cycle
|
IMP
PMID:11493649 Fission yeast mfr1 activates APC and coordinates meiotic nuc... |
KEEP AS NON CORE |
Summary: IMP from the Mfr1/APC study. Persistent high Cdc13-Cdc2 activity delays meiotic exit/sporulation; timely degradation of Cdc13 by the Mfr1-activated APC/C is required to switch off the meiotic cell cycle and license spore formation. Thus Cdc13 activity negatively impacts meiotic exit and its destruction is required for progression. A genuine, evidence-based meiotic regulatory role (non-core).
Reason: Cdc13 levels/activity gate meiotic exit; this is a real meiotic regulatory role but peripheral to the core G2/M kinase-cyclin function.
Supporting Evidence:
PMID:11493649
An mfr1 null mutant completes meiosis II but remains with high levels of cdc13 and cdc2 kinase activity and has considerably delayed spore formation.
|
|
GO:1990023
mitotic spindle midzone
|
IDA
PMID:19686686 Phospho-regulated interaction between kinesin-6 Klp9p and mi... |
KEEP AS NON CORE |
Summary: IDA to the mitotic spindle midzone. Cdc2 (CDK)-Cdc13 phosphorylates the midzone kinesin Klp9 and the bundler Ase1 to control anaphase B spindle elongation, placing the active kinase at the midzone. A genuine localization/process context.
Reason: Midzone activity in anaphase B is a downstream role of the Cdc13-Cdc2 kinase, not its core mitotic-entry function.
Supporting Evidence:
PMID:19686686
The cyclin-dependent kinase cdc2p phosphorylates and its antagonist phosphatase clp1p dephosphorylates klp9p and ase1p to control the position and timing of klp9p-ase1p interaction.
|
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GO:0044732
mitotic spindle pole body
|
IDA
PMID:11084332 Cut8, essential for anaphase, controls localization of 26S p... |
ACCEPT |
Summary: IDA SPB localization associated with the Cut8/proteasome study of mitotic cyclin destruction. Cdc13 SPB localization is independently and strongly supported; here it is in the context of where Cdc13 is degraded.
Reason: SPB localization of Cdc13 is well supported across multiple studies.
Supporting Evidence:
PMID:11084332
destruction of mitotic cyclin and Cut2 in the nucleus is dramatically delayed, though polyubiquitination of Cdc13 occurs in cut8 mutant.
|
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GO:1990023
mitotic spindle midzone
|
IMP
PMID:11084332 Cut8, essential for anaphase, controls localization of 26S p... |
KEEP AS NON CORE |
Summary: IMP to spindle midzone from the Cut8 study. Cdc13 localization/degradation is in the nucleus and at the SPB; midzone localization of the active kinase is better supported by the Klp9/Ase1 phospho-regulation study and is a non-core context.
Reason: Midzone is a downstream anaphase context for the Cdc13-Cdc2 kinase, not a core function site.
Supporting Evidence:
PMID:11084332
destruction of mitotic cyclin and Cut2 in the nucleus is dramatically delayed, though polyubiquitination of Cdc13 occurs in cut8 mutant.
|
|
GO:0000785
chromatin
|
IDA
PMID:12419251 Stable association of mitotic cyclin B/Cdc2 to replication o... |
ACCEPT |
Summary: IDA localization to chromatin. Cdc13-Cdc2 stably associates with ORC-bound replication origins (chromatin) in vivo, enforcing the dependence of S phase on an intervening mitosis and preventing re-replication. A genuine, functionally important chromatin association.
Reason: Direct evidence that Cdc13-Cdc2 associates with chromatin (replication origins) via ORC.
Supporting Evidence:
PMID:12419251
the mitotic B type cyclin Cdc13/Cdc2 kinase associates with replication origins in vivo. This association is dependent on the origin recognition complex (ORC)
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GO:0005515
protein binding
|
IPI
PMID:15791259 Fission yeast Mes1p ensures the onset of meiosis II by block... |
MARK AS OVER ANNOTATED |
Summary: IPI from the Mes1 study (Mes1 binds Slp1/APC activator to block Cdc13 degradation). Bare protein binding is uninformative; the biology is captured by the meiotic regulation annotations.
Reason: Uninformative bare protein binding term.
Supporting Evidence:
PMID:15791259
Mes1p is a factor that suppresses the degradation of cyclin Cdc13p at anaphase I
|
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GO:0005634
nucleus
|
IDA
PMID:15791259 Fission yeast Mes1p ensures the onset of meiosis II by block... |
ACCEPT |
Summary: IDA nuclear localization observed in the Mes1/Cdc13 meiotic study; consistent with the established nuclear localization of Cdc13.
Reason: Nuclear localization of Cdc13 is well established across studies.
Supporting Evidence:
PMID:15791259
Mes1p is a factor that suppresses the degradation of cyclin Cdc13p at anaphase I
|
|
GO:0005730
nucleolus
|
IDA
PMID:8688826 Cyclin B (p56cdc13) localization in the yeast Schizosaccharo... |
KEEP AS NON CORE |
Summary: IDA from ultrastructural/immunocytochemical localization of p56cdc13. The study mainly shows cytoplasmic and nuclear/perinuclear localization; nucleolar signal is a minor compartment and not a core functional site.
Reason: Nucleolar signal is a minor compartment in the EM/IF study; not a core functional site for the mitotic cyclin.
Supporting Evidence:
PMID:8688826
evidencing cytoplasmic localization of p56cdc13, in addition to the nuclear localization previously observed
|
|
GO:0005737
cytoplasm
|
IDA
PMID:8688826 Cyclin B (p56cdc13) localization in the yeast Schizosaccharo... |
KEEP AS NON CORE |
Summary: IDA cytoplasmic localization from improved EM (high-pressure freezing) and immunofluorescence, showing a major cytoplasmic pool of p56cdc13 in interphase that relocalizes to the nucleus in mitosis. A genuine localization, though the functionally dominant compartment is nuclear/SPB.
Reason: A cytoplasmic interphase pool exists, but the functionally critical mitotic localization is nuclear and at the SPB.
Supporting Evidence:
PMID:8688826
evidencing cytoplasmic localization of p56cdc13, in addition to the nuclear localization previously observed
|
|
GO:0034399
nuclear periphery
|
IDA
PMID:8688826 Cyclin B (p56cdc13) localization in the yeast Schizosaccharo... |
KEEP AS NON CORE |
Summary: IDA to nuclear periphery from the EM/IF study; consistent with the documented enrichment of Cdc13 at the nuclear periphery during the cell cycle. Non-core compartment.
Reason: Transient/contextual perinuclear localization rather than a core function site.
Supporting Evidence:
PMID:8688826
evidencing cytoplasmic localization of p56cdc13, in addition to the nuclear localization previously observed
|
|
GO:0072687
meiotic spindle
|
IDA
PMID:15791259 Fission yeast Mes1p ensures the onset of meiosis II by block... |
KEEP AS NON CORE |
Summary: IDA localization to the meiotic spindle, consistent with Cdc13's established role in meiotic divisions (analogous to its mitotic-spindle association). A genuine meiotic localization.
Reason: Meiotic-spindle localization reflects the genuine meiotic role of Cdc13 but is peripheral to its core mitotic function.
Supporting Evidence:
PMID:15791259
Mes1p is a factor that suppresses the degradation of cyclin Cdc13p at anaphase I
|
|
GO:0140429
positive regulation of mitotic sister chromatid biorientation
|
IGI
PMID:22264609 A role for metaphase spindle elongation forces in correction... |
KEEP AS NON CORE |
Summary: IGI evidence that Cdk1 (Cdc2)-Cdc13 regulates metaphase spindle elongation forces to correct merotelic kinetochore attachments (by phosphorylating/inhibiting Klp9), promoting correct bi-orientation. A genuine downstream mitotic role.
Reason: Merotelic correction/bi-orientation is a real downstream role of the kinase, not the core mitotic-entry function.
Supporting Evidence:
PMID:22264609
A role for metaphase spindle elongation forces in correction of merotelic kinetochore attachments.
|
|
GO:0010389
regulation of G2/M transition of mitotic cell cycle
|
IMP
PMID:2908246 Cloning and sequencing of the cyclin-related cdc13+ gene and... |
ACCEPT |
Summary: IMP from the original cloning/cytology study establishing that cdc13+ is required for control of the G2-to-M transition. This is the canonical core biological process of Cdc13.
Reason: Foundational genetic evidence that Cdc13 controls the G2/M transition; core function.
Supporting Evidence:
PMID:2908246
required for the control of the G2 to M transition
|
|
GO:0061575
cyclin-dependent protein serine/threonine kinase activator activity
|
IGI
PMID:2569363 The fission yeast cdc2/cdc13/suc1 protein kinase: regulation... |
ACCEPT |
Summary: IGI/experimental support that the Cdc13-encoded cyclin activates the Cdc2 protein kinase and regulates its catalytic activity and localization. Core molecular function.
Reason: Cdc13 is the activating cyclin subunit of the Cdc2/CDK1 kinase; the complex is kinase-active in vitro and oscillates in activity through the cell cycle.
Supporting Evidence:
PMID:2569363
The products of the cdc13+ and cdc2+ genes form a stable complex that displays protein kinase activity in vitro.
|
|
GO:0005634
nucleus
|
IDA
PMID:2569363 The fission yeast cdc2/cdc13/suc1 protein kinase: regulation... |
ACCEPT |
Summary: IDA nuclear localization; Cdc13 and Cdc2 co-localize in the nucleus and Cdc13 is required to localize Cdc2 to the nucleus. Strongly supported core localization.
Reason: Direct co-localization evidence; Cdc13 dictates nuclear localization of the complex.
Supporting Evidence:
PMID:2569363
cdc13 and cdc2 co-localize in the cell nucleus.
|
|
GO:0005634
nucleus
|
HDA
PMID:16823372 ORFeome cloning and global analysis of protein localization ... |
ACCEPT |
Summary: High-throughput (HDA) nuclear localization from the genome-wide ORFeome localization study. Consistent with the strong experimental consensus for nuclear Cdc13.
Reason: Consistent with abundant focused experimental evidence for nuclear localization.
Supporting Evidence:
PMID:2534559
both cdc13 and cdc2 are nuclear proteins in S. pombe.
|
|
GO:0044732
mitotic spindle pole body
|
HDA
PMID:16823372 ORFeome cloning and global analysis of protein localization ... |
ACCEPT |
Summary: HDA localization to the mitotic SPB from the genome-wide localization study; consistent with focused imaging studies of Cdc13 at the SPB.
Reason: Consistent with focused experimental SPB localization data.
Supporting Evidence:
PMID:11683390
Cdc2-YFP and cdc13-YFP are highly enriched on the spindle pole body of cells in late G2 or arrested at S phase.
|
|
GO:0072686
mitotic spindle
|
HDA
PMID:16823372 ORFeome cloning and global analysis of protein localization ... |
ACCEPT |
Summary: HDA localization to the mitotic spindle from the genome-wide study; consistent with focused imaging showing Cdc13 decorating the spindle during mitosis.
Reason: Consistent with focused experimental mitotic-spindle localization data.
Supporting Evidence:
PMID:11683390
In anaphase, the cdc2p/cdc13p complex leaves the spindle prior to sister chromatid separation
|
|
GO:0005634
nucleus
|
IDA
PMID:2534559 Fission yeast cyclin: subcellular localisation and cell cycl... |
ACCEPT |
Summary: IDA nuclear localization from the classic subcellular-localization study; both Cdc13 and Cdc2 are nuclear proteins localized to a nuclear domain distinct from chromatin, and Cdc13 is required to localize Cdc2 to the nucleus. Core localization.
Reason: Foundational direct evidence for nuclear localization of Cdc13.
Supporting Evidence:
PMID:2534559
cdc13 therefore appears to be required to localise cdc2 to the nucleus but not vice versa.
|
Q: What is the full repertoire of Cdc13-Cdc2 substrates whose phosphorylation strictly requires SPB-localized (hydrophobic-patch-dependent) cyclin-CDK versus the nuclear pool, and how does this spatial partitioning order mitotic events?
Q: How is Cdc13 stability differentially controlled in the mitotic versus meiotic cycle (APC/C-Slp1 vs Mes1-protected vs Mfr1-activated APC/C), and what determines the precise timing windows?
Q: To what extent does the ORC-dependent association of Cdc13-Cdc2 with replication origins contribute to re-replication control independently of its kinase activity?
Experiment: Combine analog-sensitive Cdc2 (cdc2as) with rapid Cdc13 degradation and quantitative phosphoproteomics across synchronized mitosis and meiosis to map cyclin-pool-specific substrate phosphorylation and define the boundary between core mitotic-entry substrates and downstream targets (bi-orientation, midzone, DDR).
Experiment: Use endogenously tagged Cdc13 with live-cell super-resolution imaging plus degron-controlled removal of SPB, ORC and telomere-bouquet factors to dissect the sequence and dependencies of Cdc13 localization (nucleus, SPB, replication origins, spindle, midzone) in mitosis and meiosis.
Experiment: Reconstitute APC/C-dependent Cdc13 destruction in vitro with Slp1, Mes1 and Mfr1 to quantify how these regulators set Cdc13 levels at the meiosis I/II boundary and at meiotic exit, correlating with MPF activity and sporulation timing.
Cdc13 is the major mitotic B-type cyclin of fission yeast, the regulatory partner of the Cdc2/CDK1 kinase (together = MPF). Cyclin AB subfamily (UniProt). Essential gene; required for the G2/M transition and for mitotic and meiotic nuclear divisions. Targeted for destruction by APC/C at anaphase (classic cyclin behaviour).
id: P10815
gene_symbol: cdc13
product_type: PROTEIN
status: DRAFT
taxon:
id: NCBITaxon:284812
label: Schizosaccharomyces pombe (strain 972 / ATCC 24843)
description: >-
Cdc13 (p56cdc13) is the major mitotic B-type cyclin (cyclin AB subfamily) of the
fission yeast Schizosaccharomyces pombe. It is the essential regulatory partner of
the cyclin-dependent kinase Cdc2 (CDK1); together the Cdc13-Cdc2 complex constitutes
M-phase-promoting factor (MPF), the principal driver of mitotic entry and progression.
Cdc13 levels rise steadily through G2 and the complex is activated at the G2/M transition
(requiring Cdc25 and CAK/Thr167 phosphorylation of Cdc2), then Cdc13 is abruptly
destroyed at anaphase by APC/C-mediated, destruction-box-dependent proteolysis, behaving
as a classic cyclin. Cdc13 binding also dictates the catalytic properties, substrate
selection and subcellular localization of Cdc2: the complex concentrates in the nucleus,
is enriched at the spindle pole body (SPB, the centrosome equivalent) in G2 via the
cyclin hydrophobic patch and a Polo-kinase-dependent mechanism, and decorates the
mitotic spindle and spindle midzone during mitosis. Cdc13-Cdc2 also associates stably
with ORC-bound replication origins, enforcing the dependence of S phase on an intervening
mitosis and preventing re-replication, and it contributes to the mitotic DNA damage
response, chromosome bi-orientation and merotelic-attachment correction. A single
Cdc13-Cdc2 complex is sufficient to drive both the mitotic and the meiotic cell cycle;
in meiosis the stability of Cdc13 is specifically controlled (stabilized by Mes1 between
meiosis I and II to permit MII, then degraded by the Mfr1-activated APC/C at the end of
meiosis II to license sporulation). Cdc13 is negatively regulated during G1 by the CDK
inhibitor Rum1, which promotes its proteolysis.
existing_annotations:
- term:
id: GO:0005815
label: microtubule organizing center
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: is_active_in
review:
summary: >-
Phylogenetic (IBA) annotation to the microtubule organizing center. Cdc13-Cdc2
is genuinely enriched at the spindle pole body (the fungal MTOC/centrosome
equivalent) in G2 and mitosis, so the term is correct, though the more specific
experimentally supported terms (mitotic spindle pole body) are preferred.
action: KEEP_AS_NON_CORE
reason: >-
Localization to the SPB/MTOC is well supported experimentally but is a context for
the core kinase-regulator function rather than a core function itself; a more
specific SPB term is available.
supported_by:
- reference_id: PMID:32084401
supporting_text: >-
the hydrophobic patch targets Cdc13 to the yeast centrosome equivalent, the
spindle pole body (SPB)
reference_section_type: ABSTRACT
- term:
id: GO:0000307
label: cyclin-dependent protein kinase holoenzyme complex
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: part_of
review:
summary: >-
Cdc13 is a B-type cyclin that forms a stable complex with the catalytic subunit
Cdc2 (CDK1); this complex is the cyclin-dependent protein kinase holoenzyme. The
IBA assignment is strongly supported by direct experimental evidence.
action: ACCEPT
reason: >-
Direct biochemical evidence shows Cdc13 forms a stable kinase-active complex with
Cdc2, consistent with the CDK holoenzyme complex.
supported_by:
- reference_id: PMID:2569363
supporting_text: >-
The products of the cdc13+ and cdc2+ genes form a stable complex that displays
protein kinase activity in vitro.
reference_section_type: ABSTRACT
- term:
id: GO:0016538
label: cyclin-dependent protein serine/threonine kinase regulator activity
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: enables
review:
summary: >-
Core molecular function. As the mitotic B-type cyclin, Cdc13 binds Cdc2 and
regulates both its catalytic activity and localization, the defining function of a
cyclin. Strongly supported by both phylogenetic inference and direct experiment.
action: ACCEPT
reason: >-
The cyclin regulatory function of Cdc13 toward the Cdc2 CDK is the central,
well-established function of this gene product.
supported_by:
- reference_id: PMID:2569363
supporting_text: >-
These observations suggest that the cdc13+-encoded cyclin acts to regulate both
the catalytic properties and the localization of the protein kinase of which it
is a subunit.
reference_section_type: ABSTRACT
- term:
id: GO:0007089
label: traversing start control point of mitotic cell cycle
evidence_type: IBA
original_reference_id: GO_REF:0000033
qualifier: involved_in
review:
summary: >-
IBA annotation to passage through Start (G1/S commitment). Cdc13 is the mitotic
cyclin whose endogenous role is the G2/M transition; in wild-type cells Start and
G1/S are executed by the G1/S cyclins Cig1, Cig2 and Puc1. Although an engineered
single Cdc13-Cdc2 complex can drive S phase when it is the only cyclin, this does
not reflect the normal Start function of Cdc13 and is best treated as an
over-annotation for the endogenous protein.
action: MARK_AS_OVER_ANNOTATED
reason: >-
The native function of Cdc13 is at G2/M, not at Start; G1/S commitment is normally
carried out by other cyclins, so the phylogenetically transferred Start annotation
overstates the endogenous role.
supported_by:
- reference_id: PMID:32084401
supporting_text: >-
Although, in wild-type cells, the G1/S cyclins Cig1 and Cig2 are expressed in G1
to execute DNA replication, in this situation, Cdc13 is expressed in G1 and
compensates for their loss
reference_section_type: RESULTS
- term:
id: GO:0005634
label: nucleus
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: >-
Electronic annotation to nucleus from UniProt subcellular location mapping. Cdc13
is a well-established nuclear protein (with the Cdc2 complex localized to a nuclear
domain distinct from chromatin), so this is correct and redundant with multiple
experimental nucleus annotations below.
action: ACCEPT
reason: Nuclear localization is directly demonstrated experimentally.
supported_by:
- reference_id: PMID:2534559
supporting_text: >-
both cdc13 and cdc2 are nuclear proteins in S. pombe.
reference_section_type: ABSTRACT
- term:
id: GO:0005816
label: spindle pole body
evidence_type: IEA
original_reference_id: GO_REF:0000044
qualifier: located_in
review:
summary: >-
Electronic annotation to spindle pole body from UniProt mapping. Cdc13-Cdc2 is
experimentally enriched at the SPB in G2 and mitosis; the mitotic spindle pole body
term (GO:0044732) is more specific and also annotated experimentally below.
action: ACCEPT
reason: SPB localization is directly supported by experimental imaging.
supported_by:
- reference_id: PMID:11683390
supporting_text: >-
Cdc2-YFP and cdc13-YFP are highly enriched on the spindle pole body of cells in
late G2 or arrested at S phase.
reference_section_type: ABSTRACT
- term:
id: GO:0016538
label: cyclin-dependent protein serine/threonine kinase regulator activity
evidence_type: IEA
original_reference_id: GO_REF:0000120
qualifier: enables
review:
summary: >-
Automated InterPro-based annotation of the core cyclin regulator activity. This
duplicates the well-supported IBA/experimental molecular function and is accepted.
action: ACCEPT
reason: Redundant with the experimentally supported core kinase-regulator function.
supported_by:
- reference_id: PMID:2569363
supporting_text: >-
These observations suggest that the cdc13+-encoded cyclin acts to regulate both
the catalytic properties and the localization of the protein kinase of which it
is a subunit.
reference_section_type: ABSTRACT
- term:
id: GO:0044772
label: mitotic cell cycle phase transition
evidence_type: IEA
original_reference_id: GO_REF:0000002
qualifier: involved_in
review:
summary: >-
Automated InterPro annotation to mitotic cell cycle phase transition. This is
correct but general; Cdc13 specifically drives the G2/M transition, which is
captured by the more precise experimental annotations (GO:0010389, GO:0010971).
action: MODIFY
reason: >-
The general term is correct but a more specific term reflecting the G2/M role is
preferred and is supported experimentally.
proposed_replacement_terms:
- id: GO:0010389
label: regulation of G2/M transition of mitotic cell cycle
supported_by:
- reference_id: PMID:2908246
supporting_text: >-
required for the control of the G2 to M transition
reference_section_type: ABSTRACT
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:9303310
qualifier: enables
review:
summary: >-
IPI annotation from the Cdc13-Rum1 interaction. Rum1 is the CDK inhibitor that binds
the Cdc13-Cdc2 complex and promotes Cdc13 proteolysis during G1. The bare protein
binding term is uninformative per curation guidelines; the biology (being subject to
regulation by the inhibitor Rum1) is captured by the kinase-regulator function and
the G1 proteolysis biology rather than by GO:0005515.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Bare protein binding is uninformative; the Rum1 interaction is better represented as
part of Cdc13 regulation, not as an independent molecular function.
supported_by:
- reference_id: PMID:9303310
supporting_text: >-
p25rum1 associates with the CDK p34cdc2/p56cdc13 during G1 in normally cycling
cells and is required for the rapid proteolysis of p56cdc13
reference_section_type: ABSTRACT
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:9472012
qualifier: enables
review:
summary: >-
IPI from the Rum1/SIC1 study, again reflecting binding of the Rum1 CDK inhibitor to
the B-cyclin Cdc2 complex. Bare protein binding is uninformative.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Uninformative bare protein binding; the interaction is between the CDK inhibitor and
the Cdc13-Cdc2 complex.
supported_by:
- reference_id: PMID:9472012
supporting_text: >-
p25rum1 and p40SIC1 are specific inhibitors of p34(cdc2/CDC28) kinase complexes
with B-type cyclins
reference_section_type: ABSTRACT
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:9614176
qualifier: enables
review:
summary: >-
IPI from the pheromone-induced G1 arrest study (Rum1-dependent Cdc13 proteolysis).
Bare protein binding is uninformative and is not retained as a core function.
action: MARK_AS_OVER_ANNOTATED
reason: Uninformative bare protein binding term.
supported_by:
- reference_id: PMID:9614176
supporting_text: >-
Cyclin B proteolysis and the cyclin-dependent kinase inhibitor rum1p are required
for pheromone-induced G1 arrest in fission yeast.
reference_section_type: TITLE
- term:
id: GO:0140602
label: nucleolar peripheral inclusion body
evidence_type: IDA
original_reference_id: PMID:37128864
qualifier: is_active_in
review:
summary: >-
IDA localization of Cdc2/CDK to a nucleolar inclusion compartment during the
stationary-phase/CDK study. This reflects a stress/quiescence-associated
relocalization rather than a site of mitotic function.
action: KEEP_AS_NON_CORE
reason: >-
A condition-specific (stationary phase) localization, not part of the core mitotic
function.
supported_by:
- reference_id: PMID:37128864
supporting_text: >-
Cdc2 accumulates in the nucleolus.
reference_section_type: ABSTRACT
- term:
id: GO:0005654
label: nucleoplasm
evidence_type: IDA
original_reference_id: PMID:1699136
qualifier: is_active_in
review:
summary: >-
IDA to nucleoplasm consistent with the nuclear (non-SPB) population of the
Cdc13-Cdc2 cyclin. Supported by direct localization of two distinct nuclear
populations of Cdc13.
action: ACCEPT
reason: Direct evidence for a nucleoplasmic population of Cdc13.
supported_by:
- reference_id: PMID:1699136
supporting_text: >-
the presence of two spatially distinct cdc13 cyclin populations in the nucleus of
S. pombe, one of which is associated with the mitotic spindle poles
reference_section_type: ABSTRACT
- term:
id: GO:0044773
label: mitotic DNA damage checkpoint signaling
evidence_type: EXP
original_reference_id: PMID:12023299
qualifier: involved_in
review:
summary: >-
Experimental evidence that Cdc2-cyclin B kinase activity influences recombinational
repair of DSBs in G2 and links the checkpoint protein Crb2 to Top3/Rqh1 function.
This is a genuine but non-core (process-specific) role of the Cdc13-Cdc2 complex.
action: KEEP_AS_NON_CORE
reason: >-
Cdc13-Cdc2 contributes to the G2 DNA damage response, but this is a downstream role
distinct from its core mitotic-entry function.
supported_by:
- reference_id: PMID:12023299
supporting_text: >-
the major Schizosaccharomyces pombe CDK, Cdc2-cyclin B, influences recombinational
repair of radiation-induced DSBs during the G(2) phase at two distinct stages
reference_section_type: ABSTRACT
- term:
id: GO:0071957
label: old mitotic spindle pole body
evidence_type: IDA
original_reference_id: PMID:1699136
qualifier: is_active_in
review:
summary: >-
IDA to the old (pre-existing) SPB, consistent with the SPB-associated population of
Cdc13. A fine-grained localization within the broader SPB localization.
action: ACCEPT
reason: Direct evidence for SPB-associated Cdc13; specific SPB sub-localization.
supported_by:
- reference_id: PMID:1699136
supporting_text: >-
the presence of two spatially distinct cdc13 cyclin populations in the nucleus of
S. pombe, one of which is associated with the mitotic spindle poles
reference_section_type: ABSTRACT
- term:
id: GO:0071958
label: new mitotic spindle pole body
evidence_type: IDA
original_reference_id: PMID:1699136
qualifier: is_active_in
review:
summary: >-
IDA to the new (newly duplicated) SPB, complementary to the old-SPB annotation.
Both reflect the experimentally observed SPB-associated Cdc13 population.
action: ACCEPT
reason: Direct evidence for SPB-associated Cdc13; specific SPB sub-localization.
supported_by:
- reference_id: PMID:1699136
supporting_text: >-
the presence of two spatially distinct cdc13 cyclin populations in the nucleus of
S. pombe, one of which is associated with the mitotic spindle poles
reference_section_type: ABSTRACT
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:1655416
qualifier: enables
review:
summary: >-
IPI to cdc2, reflecting the Cdc13-Cdc2 complex (Thr167 phosphorylation of Cdc2 is
required for kinase activity and for association with cyclin B). Bare protein binding
is uninformative; the Cdc2 interaction is the substance of the core kinase-regulator
function and is captured by GO:0016538.
action: MARK_AS_OVER_ANNOTATED
reason: >-
Uninformative bare protein binding; the Cdc13-Cdc2 interaction is already represented
by the cyclin kinase-regulator molecular function.
supported_by:
- reference_id: PMID:1655416
supporting_text: >-
Phosphorylation at Thr167 is required for Schizosaccharomyces pombe p34cdc2
function.
reference_section_type: TITLE
- term:
id: GO:0140602
label: nucleolar peripheral inclusion body
evidence_type: IDA
original_reference_id: PMID:33176152
qualifier: is_active_in
review:
summary: >-
IDA localization to nucleolar ring/inclusion structures formed upon acute heat
stress, which reversibly sequester cell-cycle regulators. This is a stress-induced
aggregation phenomenon, not a constitutive functional site.
action: KEEP_AS_NON_CORE
reason: >-
Heat-stress-induced reversible aggregation; condition-specific localization, not a
core functional compartment.
supported_by:
- reference_id: PMID:33176152
supporting_text: >-
NuRs sequester essential factors required for nuclear mRNA metabolism and nuclear
pore complex function, as well as cell-cycle regulators.
reference_section_type: ABSTRACT
- term:
id: GO:0010971
label: positive regulation of G2/M transition of mitotic cell cycle
evidence_type: IMP
original_reference_id: PMID:32084401
qualifier: involved_in
review:
summary: >-
IMP showing that the Cdc13 hydrophobic patch (and SPB targeting) is required for the
onset of mitosis and that hydrophobic-patch mutant cells arrest in G2. This directly
supports a positive role in driving the G2/M transition and is a core function.
action: ACCEPT
reason: >-
Cdc13-Cdc2 is the principal positive driver of the G2/M transition; SPB-targeting
mutants fail mitotic entry.
supported_by:
- reference_id: PMID:32084401
supporting_text: >-
disruption of this motif prevents both centrosomal localization of Cdc13 and the
onset of mitosis but does not prevent S phase
reference_section_type: ABSTRACT
- term:
id: GO:0061575
label: cyclin-dependent protein serine/threonine kinase activator activity
evidence_type: IMP
original_reference_id: PMID:32084401
qualifier: enables
review:
summary: >-
IMP supporting that Cdc13 activates Cdc2/CDK for mitotic substrate phosphorylation,
with SPB-localized Cdc13-CDK required to reach the high CDK activity needed for
mitosis. Core molecular function as the activating cyclin subunit.
action: ACCEPT
reason: >-
Cdc13 is the activating B-type cyclin of the mitotic CDK; loss of correct
localization compromises global mitotic CDK phosphorylation.
supported_by:
- reference_id: PMID:32084401
supporting_text: >-
Cdc13-CDK localization to the SPB is important for generating the highest levels of
CDK activity in these compartments needed for mitosis
reference_section_type: RESULTS
- term:
id: GO:0044732
label: mitotic spindle pole body
evidence_type: IMP
original_reference_id: PMID:32084401
qualifier: is_active_in
review:
summary: >-
IMP localization to the mitotic SPB; the hydrophobic patch targets Cdc13 to the SPB
in G2, and this localization is required for mitotic entry. Well supported.
action: ACCEPT
reason: SPB localization of Cdc13-CDK is directly demonstrated and functionally required.
supported_by:
- reference_id: PMID:32084401
supporting_text: >-
the hydrophobic patch targets Cdc13 to the yeast centrosome equivalent, the
spindle pole body (SPB)
reference_section_type: ABSTRACT
- term:
id: GO:0044732
label: mitotic spindle pole body
evidence_type: EXP
original_reference_id: PMID:32084401
qualifier: is_active_in
review:
summary: >-
EXP localization to the mitotic SPB (duplicate of the IMP annotation from the same
study). Cdc13 is enriched at the SPB in G2 and decorates the mitotic spindle.
action: ACCEPT
reason: Direct experimental SPB localization of Cdc13.
supported_by:
- reference_id: PMID:32084401
supporting_text: >-
Wild-type Cdc13 is found in the nucleus, is visibly enriched at the SPB in G2, and
decorates the mitotic spindle during mitosis
reference_section_type: RESULTS
- term:
id: GO:0140429
label: positive regulation of mitotic sister chromatid biorientation
evidence_type: EXP
original_reference_id: PMID:20739936
qualifier: involved_in
review:
summary: >-
EXP evidence that Cdk1 (Cdc2)-cyclin B phosphorylates the chromosomal passenger
complex (Survivin) to promote chromosome bi-orientation. A genuine downstream
mitotic process role of Cdc13-Cdc2.
action: KEEP_AS_NON_CORE
reason: >-
Bi-orientation control is a real role of the Cdc13-Cdc2 kinase but is downstream of
its core mitotic-entry function.
supported_by:
- reference_id: PMID:20739936
supporting_text: >-
Cdk1 (also known as Cdc2)-cyclin-B-dependent phosphorylation of Survivin
reference_section_type: ABSTRACT
- term:
id: GO:0140013
label: meiotic nuclear division
evidence_type: IMP
original_reference_id: PMID:25891897
qualifier: involved_in
review:
summary: >-
IMP showing Cdc13 is required for the meiosis I and meiosis II nuclear divisions; a
single Cdc13-Cdc2 complex is sufficient to drive the meiotic cell cycle. This is a
genuine (not over-annotated) meiotic role of Cdc13.
action: ACCEPT
reason: >-
Direct genetic evidence establishes Cdc13 as required for both meiotic nuclear
divisions.
supported_by:
- reference_id: PMID:25891897
supporting_text: >-
Cdc13 is required for meiosis I and II, and is not required for premeiotic S-phase
unless this function can be achieved by very low Cdc13 protein levels
reference_section_type: ABSTRACT
- term:
id: GO:0005634
label: nucleus
evidence_type: IDA
original_reference_id: PMID:29123917
qualifier: is_active_in
review:
summary: >-
IDA nuclear localization observed during meiotic prophase imaging of CDK1-Cdc13.
Consistent with the established nuclear localization of Cdc13-Cdc2.
action: ACCEPT
reason: Direct imaging of nuclear/telomere-bouquet-associated Cdc13 in meiosis.
supported_by:
- reference_id: PMID:29123917
supporting_text: >-
delayed accumulation of CDK1Cdc13 at the SPB
reference_section_type: RESULTS
- term:
id: GO:0140445
label: chromosome, telomeric repeat region
evidence_type: EXP
original_reference_id: PMID:29123917
qualifier: is_active_in
review:
summary: >-
EXP localization of CDK1-Cdc13 near telomeres during the meiotic telomere bouquet;
heterochromatic/telomeric regions act as a platform that delivers CDK to the SPB.
A meiosis-specific localization, genuine but non-core.
action: KEEP_AS_NON_CORE
reason: >-
Telomere-proximal localization is a meiosis-prophase-specific context for CDK
delivery to the SPB, not a core mitotic function site.
supported_by:
- reference_id: PMID:29123917
supporting_text: >-
CDK1Cdc13 can localise near to the telomeres and therefore to the SPB during the
later bouquet stage
reference_section_type: RESULTS
- term:
id: GO:0005634
label: nucleus
evidence_type: EXP
original_reference_id: PMID:11683390
qualifier: is_active_in
review:
summary: >-
EXP nuclear localization from in vivo YFP imaging of Cdc13 during mitosis and
meiosis. Strongly supported core localization.
action: ACCEPT
reason: Direct in vivo imaging confirms nuclear localization of Cdc13.
supported_by:
- reference_id: PMID:11683390
supporting_text: >-
cdc13-YFP is enriched at the nuclear periphery before fluorescence disappears
reference_section_type: ABSTRACT
- term:
id: GO:0034399
label: nuclear periphery
evidence_type: EXP
original_reference_id: PMID:11683390
qualifier: is_active_in
review:
summary: >-
EXP localization to the nuclear periphery; Cdc13-YFP becomes enriched at the nuclear
periphery in anaphase before being degraded. A genuine cell-cycle-stage-specific
localization.
action: KEEP_AS_NON_CORE
reason: >-
Nuclear-periphery enrichment is a transient late-mitotic localization, accepted as
context rather than a core functional compartment.
supported_by:
- reference_id: PMID:11683390
supporting_text: >-
cdc13-YFP is enriched at the nuclear periphery before fluorescence disappears
reference_section_type: ABSTRACT
- term:
id: GO:0044732
label: mitotic spindle pole body
evidence_type: EXP
original_reference_id: PMID:11683390
qualifier: is_active_in
review:
summary: >-
EXP localization to the mitotic SPB from in vivo imaging; Cdc2-YFP and Cdc13-YFP are
highly enriched on the SPB in late G2 and accumulate on SPBs and spindle in
prophase/metaphase. Well supported.
action: ACCEPT
reason: Direct in vivo imaging of Cdc13 at the SPB across mitosis.
supported_by:
- reference_id: PMID:11683390
supporting_text: >-
Cdc2-YFP and cdc13-YFP are highly enriched on the spindle pole body of cells in
late G2 or arrested at S phase.
reference_section_type: ABSTRACT
- term:
id: GO:0072686
label: mitotic spindle
evidence_type: EXP
original_reference_id: PMID:11683390
qualifier: is_active_in
review:
summary: >-
EXP localization to the mitotic spindle; Cdc13-Cdc2 accumulates on the spindle in
prophase/metaphase and leaves the spindle before sister-chromatid separation.
action: ACCEPT
reason: Direct imaging of Cdc13 decorating the mitotic spindle.
supported_by:
- reference_id: PMID:11683390
supporting_text: >-
In anaphase, the cdc2p/cdc13p complex leaves the spindle prior to sister chromatid
separation
reference_section_type: ABSTRACT
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:26131711
qualifier: enables
review:
summary: >-
IPI to cdc2 from the study of two Cdc2 pools in the DNA damage response. Bare protein
binding is uninformative; the Cdc13-Cdc2 interaction is already represented by the
core cyclin kinase-regulator function.
action: MARK_AS_OVER_ANNOTATED
reason: Uninformative bare protein binding; redundant with the Cdc2 kinase-regulator function.
supported_by:
- reference_id: PMID:26131711
supporting_text: >-
Two Distinct Cdc2 Pools Regulate Cell Cycle Progression and the DNA Damage Response
in the Fission Yeast S.pombe.
reference_section_type: TITLE
- term:
id: GO:0051447
label: negative regulation of meiotic cell cycle
evidence_type: IMP
original_reference_id: PMID:11493649
qualifier: involved_in
review:
summary: >-
IMP from the Mfr1/APC study. Persistent high Cdc13-Cdc2 activity delays meiotic
exit/sporulation; timely degradation of Cdc13 by the Mfr1-activated APC/C is required
to switch off the meiotic cell cycle and license spore formation. Thus Cdc13 activity
negatively impacts meiotic exit and its destruction is required for progression. A
genuine, evidence-based meiotic regulatory role (non-core).
action: KEEP_AS_NON_CORE
reason: >-
Cdc13 levels/activity gate meiotic exit; this is a real meiotic regulatory role but
peripheral to the core G2/M kinase-cyclin function.
supported_by:
- reference_id: PMID:11493649
supporting_text: >-
An mfr1 null mutant completes meiosis II but remains with high levels of cdc13 and
cdc2 kinase activity and has considerably delayed spore formation.
reference_section_type: ABSTRACT
- term:
id: GO:1990023
label: mitotic spindle midzone
evidence_type: IDA
original_reference_id: PMID:19686686
qualifier: is_active_in
review:
summary: >-
IDA to the mitotic spindle midzone. Cdc2 (CDK)-Cdc13 phosphorylates the midzone
kinesin Klp9 and the bundler Ase1 to control anaphase B spindle elongation, placing
the active kinase at the midzone. A genuine localization/process context.
action: KEEP_AS_NON_CORE
reason: >-
Midzone activity in anaphase B is a downstream role of the Cdc13-Cdc2 kinase, not its
core mitotic-entry function.
supported_by:
- reference_id: PMID:19686686
supporting_text: >-
The cyclin-dependent kinase cdc2p phosphorylates and its antagonist phosphatase
clp1p dephosphorylates klp9p and ase1p to control the position and timing of
klp9p-ase1p interaction.
reference_section_type: ABSTRACT
- term:
id: GO:0044732
label: mitotic spindle pole body
evidence_type: IDA
original_reference_id: PMID:11084332
qualifier: is_active_in
review:
summary: >-
IDA SPB localization associated with the Cut8/proteasome study of mitotic cyclin
destruction. Cdc13 SPB localization is independently and strongly supported; here it
is in the context of where Cdc13 is degraded.
action: ACCEPT
reason: SPB localization of Cdc13 is well supported across multiple studies.
supported_by:
- reference_id: PMID:11084332
supporting_text: >-
destruction of mitotic cyclin and Cut2 in the nucleus is dramatically delayed,
though polyubiquitination of Cdc13 occurs in cut8 mutant.
reference_section_type: ABSTRACT
- term:
id: GO:1990023
label: mitotic spindle midzone
evidence_type: IMP
original_reference_id: PMID:11084332
qualifier: is_active_in
review:
summary: >-
IMP to spindle midzone from the Cut8 study. Cdc13 localization/degradation is in the
nucleus and at the SPB; midzone localization of the active kinase is better supported
by the Klp9/Ase1 phospho-regulation study and is a non-core context.
action: KEEP_AS_NON_CORE
reason: >-
Midzone is a downstream anaphase context for the Cdc13-Cdc2 kinase, not a core
function site.
supported_by:
- reference_id: PMID:11084332
supporting_text: >-
destruction of mitotic cyclin and Cut2 in the nucleus is dramatically delayed,
though polyubiquitination of Cdc13 occurs in cut8 mutant.
reference_section_type: ABSTRACT
- term:
id: GO:0000785
label: chromatin
evidence_type: IDA
original_reference_id: PMID:12419251
qualifier: is_active_in
review:
summary: >-
IDA localization to chromatin. Cdc13-Cdc2 stably associates with ORC-bound
replication origins (chromatin) in vivo, enforcing the dependence of S phase on an
intervening mitosis and preventing re-replication. A genuine, functionally important
chromatin association.
action: ACCEPT
reason: >-
Direct evidence that Cdc13-Cdc2 associates with chromatin (replication origins) via
ORC.
supported_by:
- reference_id: PMID:12419251
supporting_text: >-
the mitotic B type cyclin Cdc13/Cdc2 kinase associates with replication origins in
vivo. This association is dependent on the origin recognition complex (ORC)
reference_section_type: ABSTRACT
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:15791259
qualifier: enables
review:
summary: >-
IPI from the Mes1 study (Mes1 binds Slp1/APC activator to block Cdc13 degradation).
Bare protein binding is uninformative; the biology is captured by the meiotic
regulation annotations.
action: MARK_AS_OVER_ANNOTATED
reason: Uninformative bare protein binding term.
supported_by:
- reference_id: PMID:15791259
supporting_text: >-
Mes1p is a factor that suppresses the degradation of cyclin Cdc13p at anaphase I
reference_section_type: ABSTRACT
- term:
id: GO:0005634
label: nucleus
evidence_type: IDA
original_reference_id: PMID:15791259
qualifier: is_active_in
review:
summary: >-
IDA nuclear localization observed in the Mes1/Cdc13 meiotic study; consistent with
the established nuclear localization of Cdc13.
action: ACCEPT
reason: Nuclear localization of Cdc13 is well established across studies.
supported_by:
- reference_id: PMID:15791259
supporting_text: >-
Mes1p is a factor that suppresses the degradation of cyclin Cdc13p at anaphase I
reference_section_type: ABSTRACT
- term:
id: GO:0005730
label: nucleolus
evidence_type: IDA
original_reference_id: PMID:8688826
qualifier: is_active_in
review:
summary: >-
IDA from ultrastructural/immunocytochemical localization of p56cdc13. The study
mainly shows cytoplasmic and nuclear/perinuclear localization; nucleolar signal is a
minor compartment and not a core functional site.
action: KEEP_AS_NON_CORE
reason: >-
Nucleolar signal is a minor compartment in the EM/IF study; not a core functional
site for the mitotic cyclin.
supported_by:
- reference_id: PMID:8688826
supporting_text: >-
evidencing cytoplasmic localization of p56cdc13, in addition to the nuclear
localization previously observed
reference_section_type: ABSTRACT
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IDA
original_reference_id: PMID:8688826
qualifier: is_active_in
review:
summary: >-
IDA cytoplasmic localization from improved EM (high-pressure freezing) and
immunofluorescence, showing a major cytoplasmic pool of p56cdc13 in interphase that
relocalizes to the nucleus in mitosis. A genuine localization, though the
functionally dominant compartment is nuclear/SPB.
action: KEEP_AS_NON_CORE
reason: >-
A cytoplasmic interphase pool exists, but the functionally critical mitotic
localization is nuclear and at the SPB.
supported_by:
- reference_id: PMID:8688826
supporting_text: >-
evidencing cytoplasmic localization of p56cdc13, in addition to the nuclear
localization previously observed
reference_section_type: ABSTRACT
- term:
id: GO:0034399
label: nuclear periphery
evidence_type: IDA
original_reference_id: PMID:8688826
qualifier: is_active_in
review:
summary: >-
IDA to nuclear periphery from the EM/IF study; consistent with the documented
enrichment of Cdc13 at the nuclear periphery during the cell cycle. Non-core
compartment.
action: KEEP_AS_NON_CORE
reason: Transient/contextual perinuclear localization rather than a core function site.
supported_by:
- reference_id: PMID:8688826
supporting_text: >-
evidencing cytoplasmic localization of p56cdc13, in addition to the nuclear
localization previously observed
reference_section_type: ABSTRACT
- term:
id: GO:0072687
label: meiotic spindle
evidence_type: IDA
original_reference_id: PMID:15791259
qualifier: is_active_in
review:
summary: >-
IDA localization to the meiotic spindle, consistent with Cdc13's established role in
meiotic divisions (analogous to its mitotic-spindle association). A genuine meiotic
localization.
action: KEEP_AS_NON_CORE
reason: >-
Meiotic-spindle localization reflects the genuine meiotic role of Cdc13 but is
peripheral to its core mitotic function.
supported_by:
- reference_id: PMID:15791259
supporting_text: >-
Mes1p is a factor that suppresses the degradation of cyclin Cdc13p at anaphase I
reference_section_type: ABSTRACT
- term:
id: GO:0140429
label: positive regulation of mitotic sister chromatid biorientation
evidence_type: IGI
original_reference_id: PMID:22264609
qualifier: involved_in
review:
summary: >-
IGI evidence that Cdk1 (Cdc2)-Cdc13 regulates metaphase spindle elongation forces to
correct merotelic kinetochore attachments (by phosphorylating/inhibiting Klp9),
promoting correct bi-orientation. A genuine downstream mitotic role.
action: KEEP_AS_NON_CORE
reason: >-
Merotelic correction/bi-orientation is a real downstream role of the kinase, not the
core mitotic-entry function.
supported_by:
- reference_id: PMID:22264609
supporting_text: >-
A role for metaphase spindle elongation forces in correction of merotelic
kinetochore attachments.
reference_section_type: TITLE
- term:
id: GO:0010389
label: regulation of G2/M transition of mitotic cell cycle
evidence_type: IMP
original_reference_id: PMID:2908246
qualifier: involved_in
review:
summary: >-
IMP from the original cloning/cytology study establishing that cdc13+ is required for
control of the G2-to-M transition. This is the canonical core biological process of
Cdc13.
action: ACCEPT
reason: >-
Foundational genetic evidence that Cdc13 controls the G2/M transition; core function.
supported_by:
- reference_id: PMID:2908246
supporting_text: >-
required for the control of the G2 to M transition
reference_section_type: ABSTRACT
- term:
id: GO:0061575
label: cyclin-dependent protein serine/threonine kinase activator activity
evidence_type: IGI
original_reference_id: PMID:2569363
qualifier: enables
review:
summary: >-
IGI/experimental support that the Cdc13-encoded cyclin activates the Cdc2 protein
kinase and regulates its catalytic activity and localization. Core molecular
function.
action: ACCEPT
reason: >-
Cdc13 is the activating cyclin subunit of the Cdc2/CDK1 kinase; the complex is
kinase-active in vitro and oscillates in activity through the cell cycle.
supported_by:
- reference_id: PMID:2569363
supporting_text: >-
The products of the cdc13+ and cdc2+ genes form a stable complex that displays
protein kinase activity in vitro.
reference_section_type: ABSTRACT
- term:
id: GO:0005634
label: nucleus
evidence_type: IDA
original_reference_id: PMID:2569363
qualifier: is_active_in
review:
summary: >-
IDA nuclear localization; Cdc13 and Cdc2 co-localize in the nucleus and Cdc13 is
required to localize Cdc2 to the nucleus. Strongly supported core localization.
action: ACCEPT
reason: Direct co-localization evidence; Cdc13 dictates nuclear localization of the complex.
supported_by:
- reference_id: PMID:2569363
supporting_text: >-
cdc13 and cdc2 co-localize in the cell nucleus.
reference_section_type: ABSTRACT
- term:
id: GO:0005634
label: nucleus
evidence_type: HDA
original_reference_id: PMID:16823372
qualifier: is_active_in
review:
summary: >-
High-throughput (HDA) nuclear localization from the genome-wide ORFeome
localization study. Consistent with the strong experimental consensus for nuclear
Cdc13.
action: ACCEPT
reason: Consistent with abundant focused experimental evidence for nuclear localization.
supported_by:
- reference_id: PMID:2534559
supporting_text: >-
both cdc13 and cdc2 are nuclear proteins in S. pombe.
reference_section_type: ABSTRACT
- term:
id: GO:0044732
label: mitotic spindle pole body
evidence_type: HDA
original_reference_id: PMID:16823372
qualifier: is_active_in
review:
summary: >-
HDA localization to the mitotic SPB from the genome-wide localization study;
consistent with focused imaging studies of Cdc13 at the SPB.
action: ACCEPT
reason: Consistent with focused experimental SPB localization data.
supported_by:
- reference_id: PMID:11683390
supporting_text: >-
Cdc2-YFP and cdc13-YFP are highly enriched on the spindle pole body of cells in
late G2 or arrested at S phase.
reference_section_type: ABSTRACT
- term:
id: GO:0072686
label: mitotic spindle
evidence_type: HDA
original_reference_id: PMID:16823372
qualifier: is_active_in
review:
summary: >-
HDA localization to the mitotic spindle from the genome-wide study; consistent with
focused imaging showing Cdc13 decorating the spindle during mitosis.
action: ACCEPT
reason: Consistent with focused experimental mitotic-spindle localization data.
supported_by:
- reference_id: PMID:11683390
supporting_text: >-
In anaphase, the cdc2p/cdc13p complex leaves the spindle prior to sister chromatid
separation
reference_section_type: ABSTRACT
- term:
id: GO:0005634
label: nucleus
evidence_type: IDA
original_reference_id: PMID:2534559
qualifier: is_active_in
review:
summary: >-
IDA nuclear localization from the classic subcellular-localization study; both Cdc13
and Cdc2 are nuclear proteins localized to a nuclear domain distinct from chromatin,
and Cdc13 is required to localize Cdc2 to the nucleus. Core localization.
action: ACCEPT
reason: Foundational direct evidence for nuclear localization of Cdc13.
supported_by:
- reference_id: PMID:2534559
supporting_text: >-
cdc13 therefore appears to be required to localise cdc2 to the nucleus but not vice
versa.
reference_section_type: ABSTRACT
core_functions:
- description: >-
Acts as the mitotic B-type cyclin regulatory subunit that binds and activates the
Cdc2 (CDK1) serine/threonine protein kinase, forming M-phase-promoting factor (MPF)
and dictating the catalytic activity, substrate selection and localization of the
kinase.
supported_by:
- reference_id: PMID:2569363
supporting_text: >-
These observations suggest that the cdc13+-encoded cyclin acts to regulate both the
catalytic properties and the localization of the protein kinase of which it is a
subunit.
reference_section_type: ABSTRACT
molecular_function:
id: GO:0016538
label: cyclin-dependent protein serine/threonine kinase regulator activity
- description: >-
Drives the G2/M transition and mitotic progression; Cdc13-Cdc2 accumulates through G2,
is activated at mitotic onset, and is required for entry into and completion of
mitosis.
supported_by:
- reference_id: PMID:2908246
supporting_text: >-
required for the control of the G2 to M transition
reference_section_type: ABSTRACT
- reference_id: PMID:32084401
supporting_text: >-
disruption of this motif prevents both centrosomal localization of Cdc13 and the
onset of mitosis but does not prevent S phase
reference_section_type: ABSTRACT
directly_involved_in:
- id: GO:0010389
label: regulation of G2/M transition of mitotic cell cycle
- description: >-
Provides the cyclin activity required for the meiotic nuclear divisions; a single
Cdc13-Cdc2 complex is sufficient to drive both meiosis I and meiosis II, with its
stability specifically controlled between the divisions.
supported_by:
- reference_id: PMID:25891897
supporting_text: >-
Cdc13 is required for meiosis I and II, and is not required for premeiotic S-phase
unless this function can be achieved by very low Cdc13 protein levels
reference_section_type: ABSTRACT
directly_involved_in:
- id: GO:0140013
label: meiotic nuclear division
- description: >-
Targets the Cdc2 kinase to the spindle pole body (the fungal centrosome equivalent)
via the cyclin hydrophobic patch, concentrating CDK activity needed for phosphorylation
of SPB/cytoplasmic mitotic substrates and for mitotic entry.
supported_by:
- reference_id: PMID:32084401
supporting_text: >-
the hydrophobic patch targets Cdc13 to the yeast centrosome equivalent, the spindle
pole body (SPB)
reference_section_type: ABSTRACT
locations:
- id: GO:0044732
label: mitotic spindle pole body
proposed_new_terms: []
suggested_questions:
- question: >-
What is the full repertoire of Cdc13-Cdc2 substrates whose phosphorylation strictly
requires SPB-localized (hydrophobic-patch-dependent) cyclin-CDK versus the nuclear
pool, and how does this spatial partitioning order mitotic events?
- question: >-
How is Cdc13 stability differentially controlled in the mitotic versus meiotic cycle
(APC/C-Slp1 vs Mes1-protected vs Mfr1-activated APC/C), and what determines the precise
timing windows?
- question: >-
To what extent does the ORC-dependent association of Cdc13-Cdc2 with replication
origins contribute to re-replication control independently of its kinase activity?
suggested_experiments:
- description: >-
Combine analog-sensitive Cdc2 (cdc2as) with rapid Cdc13 degradation and quantitative
phosphoproteomics across synchronized mitosis and meiosis to map cyclin-pool-specific
substrate phosphorylation and define the boundary between core mitotic-entry substrates
and downstream targets (bi-orientation, midzone, DDR).
- description: >-
Use endogenously tagged Cdc13 with live-cell super-resolution imaging plus
degron-controlled removal of SPB, ORC and telomere-bouquet factors to dissect the
sequence and dependencies of Cdc13 localization (nucleus, SPB, replication origins,
spindle, midzone) in mitosis and meiosis.
- description: >-
Reconstitute APC/C-dependent Cdc13 destruction in vitro with Slp1, Mes1 and Mfr1 to
quantify how these regulators set Cdc13 levels at the meiosis I/II boundary and at
meiotic exit, correlating with MPF activity and sporulation timing.
references:
- id: file:interpro/panther/PTHR10177/PTHR10177-review.md
title: 'PANTHER family review PTHR10177: IBA propagation assessment for cdc13'
findings: []
- id: GO_REF:0000002
title: Gene Ontology annotation through association of InterPro records with GO terms
findings: []
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:11084332
title: Cut8, essential for anaphase, controls localization of 26S proteasome, facilitating destruction of cyclin and Cut2.
findings:
- statement: >-
In cut8 mutants, nuclear destruction of mitotic cyclin Cdc13 and Cut2 is delayed
although Cdc13 is still polyubiquitinated, linking Cut8/proteasome localization to
cyclin destruction.
supporting_text: >-
destruction of mitotic cyclin and Cut2 in the nucleus is dramatically delayed, though
polyubiquitination of Cdc13 occurs in cut8 mutant.
reference_section_type: ABSTRACT
- id: PMID:11493649
title: Fission yeast mfr1 activates APC and coordinates meiotic nuclear division with sporulation.
findings:
- statement: >-
The Mfr1-activated APC/C degrades Cdc13 at the end of meiosis II to coordinate
meiotic exit with sporulation; persistent Cdc13/Cdc2 activity delays spore formation.
supporting_text: >-
An mfr1 null mutant completes meiosis II but remains with high levels of cdc13 and
cdc2 kinase activity and has considerably delayed spore formation.
reference_section_type: ABSTRACT
- id: PMID:11683390
title: In vivo localisation of fission yeast cyclin-dependent kinase cdc2p and cyclin B cdc13p during mitosis and meiosis.
findings:
- statement: >-
Cdc13-Cdc2 is enriched at the SPB in late G2, accumulates on SPBs and the spindle in
prophase/metaphase, and leaves the spindle in anaphase before sister-chromatid
separation.
supporting_text: >-
Cdc2-YFP and cdc13-YFP are highly enriched on the spindle pole body of cells in late
G2 or arrested at S phase.
reference_section_type: ABSTRACT
- statement: >-
In anaphase the complex leaves the spindle prior to sister-chromatid separation and
Cdc13 becomes enriched at the nuclear periphery before disappearing (destruction).
supporting_text: >-
In anaphase, the cdc2p/cdc13p complex leaves the spindle prior to sister chromatid
separation
reference_section_type: ABSTRACT
- id: PMID:12023299
title: Cdc2-cyclin B kinase activity links Crb2 and Rqh1-topoisomerase III.
findings:
- statement: >-
Cdc2-cyclin B (Cdc13) kinase activity influences recombinational repair of DSBs in
G2 at two stages, with effects on Top3 mediated by the checkpoint protein Crb2.
supporting_text: >-
the major Schizosaccharomyces pombe CDK, Cdc2-cyclin B, influences recombinational
repair of radiation-induced DSBs during the G(2) phase at two distinct stages
reference_section_type: ABSTRACT
- id: PMID:12419251
title: Stable association of mitotic cyclin B/Cdc2 to replication origins prevents endoreduplication.
findings:
- statement: >-
Cdc13/Cdc2 associates with ORC-bound replication origins in vivo, imposing the
dependence of S phase on an intervening mitosis and preventing re-replication.
supporting_text: >-
the mitotic B type cyclin Cdc13/Cdc2 kinase associates with replication origins in
vivo. This association is dependent on the origin recognition complex (ORC)
reference_section_type: ABSTRACT
- id: PMID:15791259
title: Fission yeast Mes1p ensures the onset of meiosis II by blocking degradation of cyclin Cdc13p.
findings:
- statement: >-
Mes1 blocks APC/C-dependent degradation of Cdc13 at anaphase I, preserving MPF
activity required for meiosis II.
supporting_text: >-
Mes1p is a factor that suppresses the degradation of cyclin Cdc13p at anaphase I
reference_section_type: ABSTRACT
- id: PMID:1655416
title: Phosphorylation at Thr167 is required for Schizosaccharomyces pombe p34cdc2 function.
findings:
- statement: >-
Thr167 phosphorylation of Cdc2 is required for kinase function and is implicated in
association of Cdc2 with cyclin B (Cdc13).
supporting_text: >-
Phosphorylation at Thr167 is required for Schizosaccharomyces pombe p34cdc2 function.
reference_section_type: TITLE
- id: PMID:16823372
title: ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe.
findings: []
- id: PMID:1699136
title: Distinct nuclear and spindle pole body population of cyclin-cdc2 in fission yeast.
findings:
- statement: >-
Two spatially distinct nuclear populations of Cdc13 cyclin exist, one associated
with the mitotic spindle poles, both co-localizing with Cdc2.
supporting_text: >-
the presence of two spatially distinct cdc13 cyclin populations in the nucleus of S.
pombe, one of which is associated with the mitotic spindle poles
reference_section_type: ABSTRACT
- id: PMID:19686686
title: Phospho-regulated interaction between kinesin-6 Klp9p and microtubule bundler Ase1p promotes spindle elongation.
findings:
- statement: >-
Cdc2 (Cdc13-CDK) phosphorylates and Clp1 dephosphorylates Klp9 and Ase1 to control
midzone Klp9-Ase1 interaction and anaphase B spindle elongation.
supporting_text: >-
The cyclin-dependent kinase cdc2p phosphorylates and its antagonist phosphatase clp1p
dephosphorylates klp9p and ase1p to control the position and timing of klp9p-ase1p
interaction.
reference_section_type: ABSTRACT
- id: PMID:20739936
title: Phosphorylation of the CPC by Cdk1 promotes chromosome bi-orientation.
findings:
- statement: >-
Cdk1 (Cdc2)-cyclin B phosphorylates Survivin (CPC) to promote chromosome
bi-orientation.
supporting_text: >-
Cdk1 (also known as Cdc2)-cyclin-B-dependent phosphorylation of Survivin
reference_section_type: ABSTRACT
- id: PMID:22264609
title: A role for metaphase spindle elongation forces in correction of merotelic kinetochore attachments.
findings:
- statement: >-
Cdk1 (Cdc2-Cdc13) regulates metaphase spindle elongation forces to correct merotelic
kinetochore attachments.
supporting_text: >-
A role for metaphase spindle elongation forces in correction of merotelic kinetochore
attachments.
reference_section_type: TITLE
- id: PMID:2534559
title: 'Fission yeast cyclin: subcellular localisation and cell cycle regulation.'
findings:
- statement: >-
Cdc13 and Cdc2 are nuclear proteins; Cdc13 is required to localize Cdc2 to the
nucleus and behaves as a classic cyclin (destroyed at mitosis).
supporting_text: >-
cdc13 therefore appears to be required to localise cdc2 to the nucleus but not vice
versa.
reference_section_type: ABSTRACT
- id: PMID:2569363
title: 'The fission yeast cdc2/cdc13/suc1 protein kinase: regulation of catalytic activity and nuclear localization.'
findings:
- statement: >-
Cdc13 and Cdc2 form a stable kinase-active complex; the Cdc13 cyclin regulates both
the catalytic properties and the localization of the Cdc2 kinase.
supporting_text: >-
The products of the cdc13+ and cdc2+ genes form a stable complex that displays
protein kinase activity in vitro.
reference_section_type: ABSTRACT
- id: PMID:25891897
title: A single cyclin-CDK complex is sufficient for both mitotic and meiotic progression in fission yeast.
findings:
- statement: >-
A single Cdc13-Cdc2 complex can drive both the mitotic and the meiotic cell cycle;
Cdc13 is required for meiosis I and II.
supporting_text: >-
Cdc13 is required for meiosis I and II, and is not required for premeiotic S-phase
unless this function can be achieved by very low Cdc13 protein levels
reference_section_type: ABSTRACT
- id: PMID:26131711
title: Two Distinct Cdc2 Pools Regulate Cell Cycle Progression and the DNA Damage Response in the Fission Yeast S.pombe.
findings:
- statement: >-
Two distinct Cdc2 (Cdc13-CDK) pools regulate cell-cycle progression and the DNA
damage response.
supporting_text: >-
Two Distinct Cdc2 Pools Regulate Cell Cycle Progression and the DNA Damage Response
in the Fission Yeast S.pombe.
reference_section_type: TITLE
- id: PMID:2908246
title: Cloning and sequencing of the cyclin-related cdc13+ gene and a cytological study of its role in fission yeast mitosis.
findings:
- statement: >-
cdc13+ is required for the control of the G2-to-M transition and is cyclin-related.
supporting_text: >-
required for the control of the G2 to M transition
reference_section_type: ABSTRACT
- id: PMID:29123917
title: The telomere bouquet facilitates meiotic prophase progression and exit in fission yeast.
findings:
- statement: >-
During meiotic prophase CDK1-Cdc13 localizes near telomeres and is delivered to the
SPB; loss of the bouquet delays CDK1-Cdc13 accumulation at the SPB.
supporting_text: >-
delayed accumulation of CDK1Cdc13 at the SPB
reference_section_type: RESULTS
- id: PMID:32084401
title: The Hydrophobic Patch Directs Cyclin B to Centrosomes to Promote Global CDK Phosphorylation at Mitosis.
findings:
- statement: >-
The Cdc13 hydrophobic patch targets the cyclin to the SPB; this localization is
required for mitotic entry and for full phosphorylation of SPB/cytoplasmic mitotic
CDK substrates, but not for S phase.
supporting_text: >-
the hydrophobic patch targets Cdc13 to the yeast centrosome equivalent, the spindle
pole body (SPB), and disruption of this motif prevents both centrosomal localization
of Cdc13 and the onset of mitosis but does not prevent S phase
reference_section_type: ABSTRACT
- id: PMID:33176152
title: Acute Heat Stress Leads to Reversible Aggregation of Nuclear Proteins into Nucleolar Rings in Fission Yeast.
findings:
- statement: >-
Acute heat stress reversibly aggregates nuclear/nucleolar proteins, including
cell-cycle regulators, into nucleolar rings at the nucleolar periphery.
supporting_text: >-
NuRs sequester essential factors required for nuclear mRNA metabolism and nuclear
pore complex function, as well as cell-cycle regulators.
reference_section_type: ABSTRACT
- id: PMID:37128864
title: CDK actively contributes to establishment of the stationary phase state in fission yeast.
findings:
- statement: >-
Upon stationary-phase entry / glucose depletion, Cdc2 (CDK) accumulates in the
nucleolus and actively contributes to the stationary-phase state.
supporting_text: >-
Cdc2 accumulates in the nucleolus.
reference_section_type: ABSTRACT
- id: PMID:8688826
title: 'Cyclin B (p56cdc13) localization in the yeast Schizosaccharomyces pombe: an ultrastructural and immunocytochemical study.'
findings:
- statement: >-
EM/immunocytochemistry shows a major cytoplasmic pool of p56cdc13 in interphase in
addition to nuclear localization, with relocalization to the nucleus in mitosis.
supporting_text: >-
evidencing cytoplasmic localization of p56cdc13, in addition to the nuclear
localization previously observed
reference_section_type: ABSTRACT
- id: PMID:9303310
title: p25rum1 promotes proteolysis of the mitotic B-cyclin p56cdc13 during G1 of the fission yeast cell cycle.
findings:
- statement: >-
The CDK inhibitor Rum1 associates with the Cdc2-Cdc13 complex during G1 and is
required for the rapid proteolysis of Cdc13.
supporting_text: >-
p25rum1 associates with the CDK p34cdc2/p56cdc13 during G1 in normally cycling cells
and is required for the rapid proteolysis of p56cdc13
reference_section_type: ABSTRACT
- id: PMID:9472012
title: The Cdk inhibitors p25rum1 and p40SIC1 are functional homologues that play similar roles in the regulation of the cell cycle in fission and budding yeast.
findings:
- statement: >-
Rum1 (and its budding-yeast homolog Sic1) are specific inhibitors of p34cdc2 kinase
complexes with B-type cyclins such as Cdc13.
supporting_text: >-
p25rum1 and p40SIC1 are specific inhibitors of p34(cdc2/CDC28) kinase complexes with
B-type cyclins
reference_section_type: ABSTRACT
- id: PMID:9614176
title: Cyclin B proteolysis and the cyclin-dependent kinase inhibitor rum1p are required for pheromone-induced G1 arrest in fission yeast.
findings:
- statement: >-
Cyclin B (Cdc13) proteolysis and the CDK inhibitor Rum1 are required for
pheromone-induced G1 arrest.
supporting_text: >-
Cyclin B proteolysis and the cyclin-dependent kinase inhibitor rum1p are required for
pheromone-induced G1 arrest in fission yeast.
reference_section_type: TITLE