snapshot_type: uniprot_record_evidence_extract archive: repository: https://github.com/ai4curation/uniprot-orphan-analysis commit: f6a331cb47f61256ad070bbaa75567094ef64e8a extraction: Original source line ranges with two context lines; not complete records. Structured fields are selected from the same archived snapshots. Sequence values are replaced by lengths and SHA-256 digests. sources: - url: https://rest.uniprot.org/uniprotkb/A0A0A7HFE1.json retrieved_at: '2026-10-18T23:38:45.581822+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/uniprotkb/A0ACM8UA39.json retrieved_at: '2026-10-18T23:38:46.135908+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/proteomes/UP000232434.json retrieved_at: '2026-10-18T23:38:47.110957+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/A0A0A7HFE1?format=txt&versions=3 retrieved_at: '2026-10-18T23:38:53.534996+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/A0A0A7HFE1?format=txt&versions=13 retrieved_at: '2026-10-18T23:38:57.049455+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/A0A0A7HFE1?format=txt&versions=27 retrieved_at: '2026-10-18T23:38:59.229583+00:00' uniprot_release: '2026_03' observations: primary_accession: A0A0A7HFE1 alternative_accession: A0ACM8UA39 sequence_identical: false primary_sequence_length: 758 alternative_sequence_length: 758 shared_uniparc_id: null same_taxon: true reference_proteome: UP000232434 proteome_is_reference: true proteome_taxon_matches: true primary_in_reference_proteome: false alternative_in_reference_proteome: true searched_reference_proteomes: - UP000232434 primary_in_any_reference_proteome: false sampled_history_versions: - 3 - 13 - 27 sampled_versions_with_proteome_links: [] current_records: - primaryAccession: A0A0A7HFE1 entryType: UniProtKB reviewed (Swiss-Prot) entryAudit: firstPublicDate: '2019-01-16' lastAnnotationUpdateDate: '2026-09-02' lastSequenceUpdateDate: '2015-03-04' entryVersion: 31 sequenceVersion: 1 genes: - geneName: evidences: - evidenceCode: ECO:0000303 source: PubMed id: '25458845' value: cas10 synonyms: - evidences: - evidenceCode: ECO:0000305 value: csm1 organism: scientificName: Streptococcus thermophilus taxonId: 1308 sequence: length: 758 sha256: 46f70cfc9087337c2ccd5b818fb4ecf5eb0033b52e50e4c1f6efa943f01950b5 uniProtKBCrossReferences: [] - primaryAccession: A0ACM8UA39 entryType: UniProtKB unreviewed (TrEMBL) entryAudit: firstPublicDate: '2026-09-02' lastAnnotationUpdateDate: '2026-09-02' lastSequenceUpdateDate: '2026-09-02' entryVersion: 1 sequenceVersion: 1 genes: - geneName: evidences: - evidenceCode: ECO:0000313 source: EMBL id: AUF35823.1 value: cas10 orfNames: - evidences: - evidenceCode: ECO:0000313 source: EMBL id: AUF35823.1 value: CW339_04770 organism: scientificName: Streptococcus thermophilus taxonId: 1308 sequence: length: 758 sha256: 99ae34307f07c5e6c1ded23adadfce81d6a38a639afba36b1f3e0674d6584698 uniProtKBCrossReferences: - database: Proteomes id: UP000232434 properties: - key: Component value: Chromosome reference_proteomes: - id: UP000232434 proteomeType: Reference proteome taxonomy: scientificName: Streptococcus thermophilus taxonId: 1308 mnemonic: STRTR unisave_records: - entry_version: 3 url: https://rest.uniprot.org/unisave/A0A0A7HFE1?format=txt&versions=3 entry_date: 09-DEC-2015, entry version 3. proteomes: [] reference_proteome_keyword: false record_text: '' - entry_version: 13 url: https://rest.uniprot.org/unisave/A0A0A7HFE1?format=txt&versions=13 entry_date: 07-OCT-2020, entry version 13. proteomes: [] reference_proteome_keyword: false record_text: '' - entry_version: 27 url: https://rest.uniprot.org/unisave/A0A0A7HFE1?format=txt&versions=27 entry_date: 27-NOV-2024, entry version 27. proteomes: [] reference_proteome_keyword: false record_text: '' archived_sources: - path: genes/STRTR/cas10/cas10-record-evidence.yaml url: https://github.com/ai4curation/uniprot-orphan-analysis/blob/f6a331cb47f61256ad070bbaa75567094ef64e8a/genes/STRTR/cas10/cas10-record-evidence.yaml sha256: 035c532c8a1fe8311a7218d8fa18ccd28e99532c1da9e3d029d795fbfdc062db excerpts: - start_line: 26 end_line: 38 text: |2 alternative_sequence_length: 758 shared_uniparc_id: null same_taxon: true reference_proteome: UP000232434 proteome_is_reference: true proteome_taxon_matches: true primary_in_reference_proteome: false alternative_in_reference_proteome: true searched_reference_proteomes: - UP000232434 primary_in_any_reference_proteome: false sampled_history_versions: - 3 - start_line: 1934 end_line: 1939 text: | - entry_version: 3 url: https://rest.uniprot.org/unisave/A0A0A7HFE1?format=txt&versions=3 entry_date: 09-DEC-2015, entry version 3. proteomes: [] reference_proteome_keyword: false record_text: | - start_line: 1989 end_line: 1994 text: | - entry_version: 13 url: https://rest.uniprot.org/unisave/A0A0A7HFE1?format=txt&versions=13 entry_date: 07-OCT-2020, entry version 13. proteomes: [] reference_proteome_keyword: false record_text: | - start_line: 2338 end_line: 2343 text: | - entry_version: 27 url: https://rest.uniprot.org/unisave/A0A0A7HFE1?format=txt&versions=27 entry_date: 27-NOV-2024, entry version 27. proteomes: [] reference_proteome_keyword: false record_text: | - path: genes/STRTR/cas10/cas10-bioinformatics/reference-counterparts/comparison.yaml url: https://github.com/ai4curation/uniprot-orphan-analysis/blob/f6a331cb47f61256ad070bbaa75567094ef64e8a/genes/STRTR/cas10/cas10-bioinformatics/reference-counterparts/comparison.yaml sha256: 643dc6474fc81390a083f6bbfb87179bfb5e35da342c9363422f77f3a732ae31 excerpts: - start_line: 25 end_line: 29 text: |2 - -v - '1' target_sequence_count: 1657 query_sha256: c83019316c80b199a92851865206d410eccab621c58fad19c84c0eee9be01f5e targets_sha256: 2ba0c960ff7acb33b8c94c91b1e5081c781e78154107e09e7bafda9de1dad85f - start_line: 44 end_line: 48 text: |2 sha256: 2ba0c960ff7acb33b8c94c91b1e5081c781e78154107e09e7bafda9de1dad85f detailed_alignment_limit: 10 candidate_count: 1 candidates: - accession: A0ACM8UA39 - start_line: 52 end_line: 64 text: |2 bit_score: 1454.0 global_score: 3721.5 query_length: 758 target_length: 758 alignment_columns: 761 identities: 720 mismatches: 35 gap_columns: 6 identity_percent: 94.6124 query_coverage_percent: 99.6042 target_coverage_percent: 99.6042 substitutions: - query_position: 62 comparison: provenance: query_accession: A0A0A7HFE1 run_at: '2026-10-18T23:32:56.903396+00:00' biopython_version: '1.85' mmseqs_version: 18-8cc5c command: - mmseqs - easy-search - genes/STRTR/cas10/cas10-bioinformatics/reference-counterparts/query.fasta - .cache/orphan-curated/UP000232434.fasta - genes/STRTR/cas10/cas10-bioinformatics/reference-counterparts/search.tsv - genes/STRTR/cas10/cas10-bioinformatics/reference-counterparts/tmp - --threads - '4' - -s - '7.5' - -e - 1e-5 - --max-seqs - '1000' - --format-output - query,target,pident,alnlen,qstart,qend,qlen,tstart,tend,tlen,evalue,bits - --remove-tmp-files - '1' - -v - '1' target_sequence_count: 1657 query_sha256: c83019316c80b199a92851865206d410eccab621c58fad19c84c0eee9be01f5e targets_sha256: 2ba0c960ff7acb33b8c94c91b1e5081c781e78154107e09e7bafda9de1dad85f global_alignment: mode: global matrix: BLOSUM62 open_gap: -10 extend_gap: -0.5 terminal_gaps_penalized: true identity_denominator: All global alignment columns, including gaps coverage_denominator: Full query/target length; numerator is paired nongap residues limitation: MMseqs2 heuristic search; no guarantee of exhaustive retrieval or locus equivalence target_source: url: https://rest.uniprot.org/uniprotkb/stream?query=proteome%3AUP000232434&format=fasta retrieved_at: '2026-10-18T23:32:24.964588+00:00' uniprot_release: '2026_03' sequence_count: 1657 sha256: 2ba0c960ff7acb33b8c94c91b1e5081c781e78154107e09e7bafda9de1dad85f detailed_alignment_limit: 10 candidate_count: 1 retained_alignment_count: 1 candidates: - accession: A0ACM8UA39 description: tr|A0ACM8UA39|A0ACM8UA39_STRTR Type III-A CRISPR-associated protein Cas10/Csm1 OS=Streptococcus thermophilus OX=1308 GN=cas10 PE=4 SV=1 evalue: 0.0 bit_score: 1454.0 global_score: 3721.5 query_length: 758 target_length: 758 alignment_columns: 761 identities: 720 mismatches: 35 gap_columns: 6 identity_percent: 94.6124 query_coverage_percent: 99.6042 target_coverage_percent: 99.6042