snapshot_type: uniprot_record_evidence_extract archive: repository: https://github.com/ai4curation/uniprot-orphan-analysis commit: f6a331cb47f61256ad070bbaa75567094ef64e8a extraction: Original source line ranges with two context lines; not complete records. Structured fields are selected from the same archived snapshots. Sequence values are replaced by lengths and SHA-256 digests. sources: - url: https://rest.uniprot.org/uniprotkb/P22643.json retrieved_at: '2026-10-18T23:39:21.849479+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/proteomes/UP001161920.json retrieved_at: '2026-10-18T23:39:21.998732+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/proteomes/UP001603991.json retrieved_at: '2026-10-18T23:39:22.149025+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/P22643?format=txt&versions=97 retrieved_at: '2026-10-18T23:39:22.431616+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/P22643?format=txt&versions=110 retrieved_at: '2026-10-18T23:39:26.653694+00:00' uniprot_release: '2026_03' - url: https://rest.uniprot.org/unisave/P22643?format=txt&versions=122 retrieved_at: '2026-10-18T23:39:33.125919+00:00' uniprot_release: '2026_03' observations: primary_accession: P22643 alternative_accession: null sequence_identical: null primary_sequence_length: 310 alternative_sequence_length: null shared_uniparc_id: null same_taxon: null reference_proteome: UP001161920 proteome_is_reference: true proteome_taxon_matches: true primary_in_reference_proteome: false alternative_in_reference_proteome: null searched_reference_proteomes: - UP001161920 - UP001603991 primary_in_any_reference_proteome: false sampled_history_versions: - 97 - 110 - 122 sampled_versions_with_proteome_links: [] current_records: - primaryAccession: P22643 entryType: UniProtKB reviewed (Swiss-Prot) entryAudit: firstPublicDate: '1991-08-01' lastAnnotationUpdateDate: '2026-09-02' lastSequenceUpdateDate: '1995-02-01' entryVersion: 127 sequenceVersion: 2 genes: - geneName: value: dhlA organism: scientificName: Xanthobacter autotrophicus taxonId: 280 sequence: length: 310 sha256: 7c3388a577fe60ea11c4f16a48c345a295fbdba41a8a8a525d9d97a8f1b4f68b uniProtKBCrossReferences: [] reference_proteomes: - id: UP001161920 proteomeType: Reference proteome taxonomy: scientificName: Xanthobacter autotrophicus taxonId: 280 mnemonic: XANAU - id: UP001603991 proteomeType: Reference proteome taxonomy: scientificName: Xanthobacter autotrophicus taxonId: 280 mnemonic: XANAU unisave_records: - entry_version: 97 url: https://rest.uniprot.org/unisave/P22643?format=txt&versions=97 entry_date: 14-OCT-2015, entry version 97. proteomes: [] reference_proteome_keyword: false record_text: '' - entry_version: 110 url: https://rest.uniprot.org/unisave/P22643?format=txt&versions=110 entry_date: 02-DEC-2020, entry version 110. proteomes: [] reference_proteome_keyword: false record_text: '' - entry_version: 122 url: https://rest.uniprot.org/unisave/P22643?format=txt&versions=122 entry_date: 27-NOV-2024, entry version 122. proteomes: [] reference_proteome_keyword: false record_text: '' archived_sources: - path: genes/XANAU/dhlA/dhlA-record-evidence.yaml url: https://github.com/ai4curation/uniprot-orphan-analysis/blob/f6a331cb47f61256ad070bbaa75567094ef64e8a/genes/XANAU/dhlA/dhlA-record-evidence.yaml sha256: 313837b10ab1ba3c67e90eee2aa63452edd67daf95dd9db0660674b0c86fd42a excerpts: - start_line: 35 end_line: 39 text: |2 - UP001161920 - UP001603991 primary_in_any_reference_proteome: false sampled_history_versions: - 97 - start_line: 1601 end_line: 1606 text: | - entry_version: 97 url: https://rest.uniprot.org/unisave/P22643?format=txt&versions=97 entry_date: 14-OCT-2015, entry version 97. proteomes: [] reference_proteome_keyword: false record_text: | - start_line: 1824 end_line: 1829 text: | - entry_version: 110 url: https://rest.uniprot.org/unisave/P22643?format=txt&versions=110 entry_date: 02-DEC-2020, entry version 110. proteomes: [] reference_proteome_keyword: false record_text: | - start_line: 2091 end_line: 2096 text: | - entry_version: 122 url: https://rest.uniprot.org/unisave/P22643?format=txt&versions=122 entry_date: 27-NOV-2024, entry version 122. proteomes: [] reference_proteome_keyword: false record_text: | - path: genes/XANAU/dhlA/dhlA-bioinformatics/reference-counterparts/comparison.yaml url: https://github.com/ai4curation/uniprot-orphan-analysis/blob/f6a331cb47f61256ad070bbaa75567094ef64e8a/genes/XANAU/dhlA/dhlA-bioinformatics/reference-counterparts/comparison.yaml sha256: 4bd248799a9148abb2b1dbf123eb44531b051fec05a2c8444c0fb4d013168a9f excerpts: - start_line: 25 end_line: 29 text: |2 - -v - '1' target_sequence_count: 9703 query_sha256: 0be7f6873e597886f3b46fc5743f1730f8b123a5f0fdd1d80591922802856eb2 targets_sha256: 077766436b1474bc465d0cc25baa18c37a20fd74918e9ba3aac85830cd4a6a0a - start_line: 55 end_line: 59 text: |2 - UP001603991 detailed_alignment_limit: 10 candidate_count: 9 candidates: - accession: A0ACG3ZSA9 comparison: provenance: query_accession: P22643 run_at: '2026-10-18T23:34:44.357402+00:00' biopython_version: '1.85' mmseqs_version: 18-8cc5c command: - mmseqs - easy-search - genes/XANAU/dhlA/dhlA-bioinformatics/reference-counterparts/query.fasta - .cache/orphan-curated/UP001161920__UP001603991.fasta - genes/XANAU/dhlA/dhlA-bioinformatics/reference-counterparts/search.tsv - genes/XANAU/dhlA/dhlA-bioinformatics/reference-counterparts/tmp - --threads - '4' - -s - '7.5' - -e - 1e-5 - --max-seqs - '1000' - --format-output - query,target,pident,alnlen,qstart,qend,qlen,tstart,tend,tlen,evalue,bits - --remove-tmp-files - '1' - -v - '1' target_sequence_count: 9703 query_sha256: 0be7f6873e597886f3b46fc5743f1730f8b123a5f0fdd1d80591922802856eb2 targets_sha256: 077766436b1474bc465d0cc25baa18c37a20fd74918e9ba3aac85830cd4a6a0a global_alignment: mode: global matrix: BLOSUM62 open_gap: -10 extend_gap: -0.5 terminal_gaps_penalized: true identity_denominator: All global alignment columns, including gaps coverage_denominator: Full query/target length; numerator is paired nongap residues limitation: MMseqs2 heuristic search; no guarantee of exhaustive retrieval or locus equivalence target_source: sources: - url: https://rest.uniprot.org/uniprotkb/stream?query=proteome%3AUP001161920&format=fasta retrieved_at: '2026-10-18T23:32:41.911171+00:00' uniprot_release: '2026_03' sequence_count: 4758 sha256: 3e0824cfe4b05e24b57068c39be155305321a1920a6db1e42f468ed8294bc635 - url: https://rest.uniprot.org/uniprotkb/stream?query=proteome%3AUP001603991&format=fasta retrieved_at: '2026-10-18T23:32:49.253374+00:00' uniprot_release: '2026_03' sequence_count: 4945 sha256: abf27c9f3610ea968d00c813d465864fa3d6bc975d774105b0a1e3de4f5154e8 sequence_count: 9703 sha256: 077766436b1474bc465d0cc25baa18c37a20fd74918e9ba3aac85830cd4a6a0a proteomes: - UP001161920 - UP001603991 detailed_alignment_limit: 10 candidate_count: 9 retained_alignment_count: 9 candidates: - accession: A0ACG3ZSA9 description: tr|A0ACG3ZSA9|A0ACG3ZSA9_XANAU Alpha/beta hydrolase OS=Xanthobacter autotrophicus OX=280 GN=V5F46_05145 PE=4 SV=1 evalue: 5.14e-16 bit_score: 78.0 global_score: 191.0 query_length: 310 target_length: 309 alignment_columns: 359 identities: 90 mismatches: 170 gap_columns: 99 identity_percent: 25.0696 query_coverage_percent: 83.871 target_coverage_percent: 84.1424 - accession: A0ACG2KQT6 description: tr|A0ACG2KQT6|A0ACG2KQT6_XANAU AB hydrolase-1 domain-containing protein (Fragment) OS=Xanthobacter autotrophicus OX=280 GN=K9U40_23710 PE=4 SV=1 evalue: 3.015e-34 bit_score: 133.0 global_score: 181.0 query_length: 310 target_length: 152 alignment_columns: 349 identities: 61 mismatches: 52 gap_columns: 236 identity_percent: 17.4785 query_coverage_percent: 36.4516 target_coverage_percent: 74.3421