ACP7 (acid phosphatase type 7, also called purple acid phosphatase long form or PAPL) is a predicted secreted metallophosphoesterase of the purple acid phosphatase family. It is expected to hydrolyse phosphate monoesters to an alcohol and inorganic phosphate under acidic conditions, using a binuclear metal centre that binds one iron and one zinc ion per subunit, and it carries a cleaved N-terminal signal peptide and N-glycosylation sites consistent with secretion. ACP7 was identified as the founding member of a novel subfamily of plant-like purple acid phosphatases present in mammals, insects and nematodes, and is more similar to the approximately 55 kDa purple acid phosphatases of plants than to the shorter animal enzymes such as ACP5; a structural model built on the red kidney bean enzyme shows the canonical catalytic centre is present. The protein is detected in proteomic surveys, so it is expressed, but its catalytic activity, cofactor loading, physiological substrate, tissue distribution and phenotype have never been tested - every functional statement about it is inferred from the plant enzyme.
Definition: Binding to a zinc ion (Zn).
Justification: Not a new term - GO:0008270 zinc ion binding already exists - but proposed as an addition to this gene, since the evidence is more specific than the GO:0046872 metal ion binding currently annotated. UniProt records four individual Zn(2+) BINDING features at residues 170, 205, 286 and 333, and the Zn site is half of the binuclear centre that defines the purple acid phosphatase family. The iron half is deliberately not proposed at the same specificity: UniProt records that ligand as 'Fe cation' (CHEBI:24875) without an oxidation state, so neither a ferric nor a ferrous term is justified, and GO:0005506 iron ion binding would be the most that could be claimed.
Parent term: metal ion binding
Supporting Evidence:
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
| GO:0003993 acid phosphatase activity | IEA GO_REF:0000120 | ACCEPT | Summary: Acid phosphatase activity, by automatic annotation from the EC number, with UniProt recording the reaction as RHEA:15017. Provenance, stated once and applying to every annotation. ACP7 has no biochemical or functional characterisation: UniProt's FUNCTION, EC number, catalytic activity and both cofactor statements are all ECO:0000250 by similarity to UniProtKB:P80366, the Fe(3+)-Zn(2+) purple acid phosphatase of the kidney bean Phaseolus vulgaris. That cross-kingdom template is not arbitrary, which is the key point. PMID:16793224 identified ACP7 as a novel PLANT-LIKE human purple acid phosphatase, built a structural model of the human enzyme on the red kidney bean structure specifically, and showed the catalytic centre is present in it. UniProt's AltName 'Purple acid phosphatase long form' is ECO:0000303 from that paper. So the kidney bean is the deliberate, published choice of template for a protein argued to belong to a plant-like subfamily - a considered inference rather than a distant accident. What remains absent is functional testing: no activity assay, no substrate, no phenotype. The protein itself is not hypothetical - UniProt records PE 1, evidence at protein level, with proteomics identification - so ACP7 is uncharacterised rather than unstudied. Accepted as a well-founded inference: the metallophosphoesterase fold is supported by several InterPro signatures, the iron- and zinc-coordinating residues are individually annotated, and a published structural model places the catalytic centre in the human protein. But it is a modelled prediction, not a measured activity. Supporting Evidence: file:human/ACP7/ACP7-uniprot.txt DE EC=3.1.3.2 {ECO:0000250|UniProtKB:P80366}; PMID:16793224 A structural model for the human enzyme was constructed based on the red kidney bean purple acid phosphatase structure. This model shows that the catalytic centre observed in other purple acid phosphatases is also present in this new isoform. file:human/ACP7/ACP7-uniprot.txt CC -!- FUNCTION: Putative metallophosphoesterase belonging to the purple acid |
| GO:0005576 extracellular region | IEA GO_REF:0000044 | ACCEPT | Summary: Extracellular region, from the UniProt SubCell mapping of a Secreted assertion. That assertion is ECO:0000305, inferred by a curator from the ECO:0000255 predicted signal peptide at residues 1-26, so it is an inference resting on a prediction. Accepted - a cleaved signal peptide with no downstream transmembrane segment is a reliable indicator, the protein is glycosylated as a secreted protein would be, and it is detected in proteomics - but the localisation itself has not been demonstrated experimentally. Supporting Evidence: file:human/ACP7/ACP7-uniprot.txt CC -!- SUBCELLULAR LOCATION: Secreted {ECO:0000305}. file:human/ACP7/ACP7-uniprot.txt PE 1: Evidence at protein level; |
| GO:0016787 hydrolase activity | IEA GO_REF:0000002 | KEEP AS NON CORE | Summary: Hydrolase activity, from InterPro. Correct but two levels above the acid phosphatase term derived from the same prediction, and it conveys nothing the specific term does not. Retained as a non-core parent. Supporting Evidence: file:human/ACP7/ACP7-uniprot.txt CC -!- FUNCTION: Putative metallophosphoesterase belonging to the purple acid |
| GO:0046872 metal ion binding | IEA GO_REF:0000002 | ACCEPT | Summary: Metal ion binding, from InterPro, and the best-supported annotation on this gene: UniProt annotates individual BINDING features for the Fe cation (141, 170, 173, 335) and for Zn(2+) (170, 205, 286, 333), and the binuclear Fe-Zn centre defines the purple acid phosphatase family rather than being a generic fold property. PMID:16793224's structural model shows that centre is present in the human protein. Still ECO:0000250 in origin, but the residue-level conservation makes it the least speculative call here. Note the more specific GO:0008270 zinc ion binding is proposed under proposed_new_terms; no ferric-specific term is proposed because UniProt records the ligand as 'Fe cation' without an oxidation state. Supporting Evidence: file:human/ACP7/ACP7-uniprot.txt FT BINDING 205 PMID:16793224 A structural model for the human enzyme was constructed based on the red kidney bean purple acid phosphatase structure. This model shows that the catalytic centre observed in other purple acid phosphatases is also present in this new isoform. |
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Download this section (compressed HTML)Q: Does ACP7 have measurable acid phosphatase activity? Nothing has been tested. Its EC number, catalytic activity, Rhea reaction and both cofactors are ECO:0000250 by similarity to the kidney bean enzyme. That template is a considered choice - PMID:16793224 argues ACP7 belongs to a plant-like subfamily and models it on the bean structure - but a model showing the catalytic centre is present is not a demonstration that it works.
Q: How does ACP7 differ from ACP5, the characterised human purple acid phosphatase? ACP5 (TRAP) is a well-studied short-form animal PAP with known substrates and a bone-resorption phenotype. ACP7 is longer and argued to be plant-like, so a side-by-side comparison of substrate preference and pH optimum would be the most direct route to a function, and would test whether the plant-like classification has functional consequences.
Q: Is the binuclear metal centre assembled? The Fe and Zn coordinating residues are annotated individually and are the least speculative part of the record, but metal loading has never been measured. A protein retaining the residues without assembling the centre would be a pseudoenzyme, a live possibility for any untested member of a catalytic family.
Q: Where is ACP7 expressed and is it secreted? Proteomic detection establishes that the protein exists (UniProt PE 1), but the Secreted call is ECO:0000305 inferred from a predicted signal peptide, and no tissue distribution is known.
Experiment: Express and purify recombinant ACP7, determine metal content by ICP-MS, and assay phosphomonoesterase activity across a pH range against generic substrates such as p-nitrophenyl phosphate, comparing with a characterised purple acid phosphatase as positive control and with a metal-site mutant as negative control.
Hypothesis: ACP7 is an active acid phosphatase with an assembled Fe-Zn centre.
Type: enzymology
Experiment: Survey ACP7 transcript and protein across human tissues, and test secretion directly by expressing tagged protein and assaying conditioned medium versus cell lysate, with and without the predicted signal peptide.
Hypothesis: ACP7 is secreted and expressed in a restricted tissue.
Type: expression and cell biology
Experiment: Assay purified ACP7 and ACP5 side by side against a phosphometabolite library and a phosphopeptide array across a pH range, testing whether ACP7's plant-like classification predicts plant-PAP-like substrate preferences rather than ACP5-like ones.
Hypothesis: ACP7 has a substrate preference distinguishable from the characterised human paralog ACP5.
Type: comparative enzymology
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