id: Q16864
gene_symbol: ATP6V1F
product_type: PROTEIN
status: COMPLETE
taxon:
  id: NCBITaxon:9606
  label: Homo sapiens
description: ATP6V1F encodes the F subunit (~13 kDa; 119 aa, 13,441 Da, historically
  called the "14-kDa subunit") of the V1 peripheral sector of the
  vacuolar-type H+-ATPase (V-ATPase). Together with subunit D, subunit F forms the central
  rotor of V1 that is driven by ATP hydrolysis in the catalytic A3B3 hexamer and transmits
  rotational energy to the V0 proteolipid c-ring to drive proton translocation across
  organelle membranes. ATP6V1F is the smallest subunit of V1 and is ubiquitously expressed,
  reflecting the housekeeping role of V-ATPase in acidifying lysosomes, endosomes, Golgi
  apparatus, and other organelles. The D-F central rotor assembly serves as the mechanical
  connection between the ATP-hydrolyzing head and the proton-translocating V0 membrane
  sector. In some cell types, the V-ATPase is targeted to the plasma membrane for
  extracellular acidification. The protein interacts directly with V0 d subunit
  (ATP6V0D1), cementing its position in the central stalk. Two alternatively spliced
  isoforms exist.
alternative_products:
- name: '1'
  id: Q16864-1
- name: '2'
  id: Q16864-2
  sequence_note: VSP_045952
existing_annotations:
- term:
    id: GO:0016020
    label: membrane
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  qualifier: is_active_in
  review:
    summary: Phylogenetic inference placing ATP6V1F as active in membrane context.
      The V1 F subunit is a peripheral protein on the cytoplasmic face of membranes
      where V-ATPase is active.
    action: MARK_AS_OVER_ANNOTATED
    reason: The generic membrane annotation with is_active_in is subsumed by the more
      specific lysosomal membrane and other organelle membrane annotations. The IBA
      annotation is overly broad.

- term:
    id: GO:0030665
    label: clathrin-coated vesicle membrane
  evidence_type: IEA
  original_reference_id: GO_REF:0000044
  qualifier: located_in
  review:
    summary: UniProt subcellular location vocabulary mapping from ortholog data.
      V-ATPase is present on clathrin-coated vesicles for endocytic pathway acidification.
    action: KEEP_AS_NON_CORE
    reason: Consistent with V-ATPase biology but non-core relative to lysosomal function.

- term:
    id: GO:0030672
    label: synaptic vesicle membrane
  evidence_type: IEA
  original_reference_id: GO_REF:0000044
  qualifier: located_in
  review:
    summary: UniProt subcellular location vocabulary mapping for synaptic vesicle membrane.
      V-ATPase acidifies synaptic vesicles for neurotransmitter loading.
    action: KEEP_AS_NON_CORE
    reason: Non-core for this ubiquitously expressed subunit; neuronal context is
      secondary to the primary lysosomal function.

- term:
    id: GO:0033180
    label: proton-transporting V-type ATPase, V1 domain
  evidence_type: IEA
  original_reference_id: GO_REF:0000002
  qualifier: part_of
  review:
    summary: InterPro-based annotation placing ATP6V1F in the V1 domain. Confirmed
      by human cryo-EM structural data.
    action: ACCEPT
    reason: Subunit F is a defining structural component of the V1 domain central rotor,
      confirmed by cryo-EM (PMID:33065002) and biochemical data (PMID:18752060).
    supported_by:
    - reference_id: PMID:33065002
      supporting_text: Vesicular- or vacuolar-type adenosine triphosphatases (V-ATPases)
        are ATP-driven proton pumps comprised of a cytoplasmic V1 complex for ATP hydrolysis
        and a membrane-embedded Vo complex for proton transfer.
      reference_section_type: ABSTRACT

- term:
    id: GO:0034220
    label: monoatomic ion transmembrane transport
  evidence_type: IEA
  original_reference_id: GO_REF:0000002
  qualifier: involved_in
  review:
    summary: InterPro-based annotation for monoatomic ion transmembrane transport, which
      subsumes proton transport. The more specific proton transmembrane transport annotation
      is more informative.
    action: MARK_AS_OVER_ANNOTATED
    reason: The generic monoatomic ion transmembrane transport is subsumed by the more
      specific proton transmembrane transport annotations. Redundant and less informative.

- term:
    id: GO:0046961
    label: proton-transporting ATPase activity, rotational mechanism
  evidence_type: IEA
  original_reference_id: GO_REF:0000002
  qualifier: enables
  review:
    summary: InterPro-based annotation for rotational ATPase activity. The F subunit
      is part of the central rotor essential for this activity.
    action: ACCEPT
    reason: Core molecular function of the V-ATPase; subunit F is an essential structural
      component of the rotary mechanism.
    supported_by:
    - reference_id: PMID:18752060
      supporting_text: Energy from this reaction drives the rotation of a central stalk
        consisting of V1 subunits D and F and this is coupled to rotation of the V0
        proteolipid ring made up of c, c′ and c″.
      reference_section_type: INTRODUCTION

- term:
    id: GO:1902600
    label: proton transmembrane transport
  evidence_type: IEA
  original_reference_id: GO_REF:0000002
  qualifier: involved_in
  review:
    summary: InterPro-based annotation for proton transmembrane transport.
    action: ACCEPT
    reason: Core biological process of V-ATPase.

- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:32296183
  qualifier: enables
  review:
    summary: Generic protein binding from a reference map of the human binary protein
      interactome. High-throughput; not informative for specific function.
    action: MARK_AS_OVER_ANNOTATED
    reason: High-throughput interactome protein binding annotation is uninformative
      for the specific function of ATP6V1F.

- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:33961781
  qualifier: enables
  review:
    summary: Generic protein binding from a dual proteome-scale interactome network.
      High-throughput; not informative.
    action: MARK_AS_OVER_ANNOTATED
    reason: High-throughput interactome data is uninformative for ATP6V1F function.

- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:35271311
  qualifier: enables
  review:
    summary: Generic protein binding from the OpenCell endogenous tagging study.
      High-throughput; not informative.
    action: MARK_AS_OVER_ANNOTATED
    reason: High-throughput protein binding annotation is uninformative.

- term:
    id: GO:0015078
    label: proton transmembrane transporter activity
  evidence_type: IEA
  original_reference_id: GO_REF:0000107
  qualifier: contributes_to
  review:
    summary: Ensembl ortholog-transfer annotation for proton transmembrane transporter
      activity. The contributes_to qualifier appropriately acknowledges the whole-complex
      nature of this activity.
    action: ACCEPT
    reason: Core molecular function of V-ATPase; contributes_to qualifier is appropriate
      for a structural subunit that participates in but does not individually perform
      the activity.

- term:
    id: GO:0033176
    label: proton-transporting V-type ATPase complex
  evidence_type: IEA
  original_reference_id: GO_REF:0000107
  qualifier: part_of
  review:
    summary: Ensembl ortholog-transfer annotation for V-type ATPase complex membership.
      Consistent with structural evidence.
    action: ACCEPT
    reason: Core complex membership.

- term:
    id: GO:0097401
    label: synaptic vesicle lumen acidification
  evidence_type: IEA
  original_reference_id: GO_REF:0000107
  qualifier: involved_in
  review:
    summary: Ensembl ortholog-transfer annotation for synaptic vesicle lumen acidification.
      V-ATPase acidifies synaptic vesicles; F subunit would be present as part of the
      complex in neurons.
    action: KEEP_AS_NON_CORE
    reason: Synaptic vesicle acidification is a non-core context for this ubiquitous
      subunit; primary function is lysosomal/organellar acidification.

- term:
    id: GO:0000139
    label: Golgi membrane
  evidence_type: NAS
  original_reference_id: PMID:32001091
  qualifier: located_in
  review:
    summary: NAS from V-ATPase review. V-ATPase acidifies the Golgi; F subunit is
      part of the complex.
    action: ACCEPT
    reason: Well-established V-ATPase location in Golgi for glycosylation pathway function.

- term:
    id: GO:0005765
    label: lysosomal membrane
  evidence_type: NAS
  original_reference_id: PMID:32001091
  qualifier: located_in
  review:
    summary: NAS from V-ATPase review. Lysosomal membrane is the primary functional
      location.
    action: ACCEPT
    reason: Core localization.

- term:
    id: GO:0005886
    label: plasma membrane
  evidence_type: NAS
  original_reference_id: PMID:32001091
  qualifier: located_in
  review:
    summary: NAS from V-ATPase review. V-ATPase is targeted to plasma membrane in
      specialized cell types.
    action: KEEP_AS_NON_CORE
    reason: Plasma membrane localization is real in specialized contexts but non-core
      for this ubiquitous subunit.

- term:
    id: GO:0007035
    label: vacuolar acidification
  evidence_type: NAS
  original_reference_id: PMID:32001091
  qualifier: involved_in
  review:
    summary: NAS from V-ATPase review. Core function of V-ATPase.
    action: ACCEPT
    reason: Vacuolar acidification is the core biological process.

- term:
    id: GO:0007042
    label: lysosomal lumen acidification
  evidence_type: NAS
  original_reference_id: PMID:32001091
  qualifier: involved_in
  review:
    summary: NAS from V-ATPase review. More specific than vacuolar acidification.
    action: ACCEPT
    reason: Core function of V-ATPase.

- term:
    id: GO:0007042
    label: lysosomal lumen acidification
  evidence_type: NAS
  original_reference_id: PMID:33065002
  qualifier: involved_in
  review:
    summary: NAS from the structural study. Consistent.
    action: ACCEPT
    reason: Core function.

- term:
    id: GO:0010008
    label: endosome membrane
  evidence_type: NAS
  original_reference_id: PMID:32001091
  qualifier: located_in
  review:
    summary: NAS from V-ATPase review. V-ATPase acidifies endosomes.
    action: ACCEPT
    reason: Endosome membrane is an established V-ATPase location.

- term:
    id: GO:0016020
    label: membrane
  evidence_type: IDA
  original_reference_id: PMID:33065002
  qualifier: located_in
  review:
    summary: IDA from the cryo-EM study. F subunit is associated with membrane as
      part of the V-ATPase complex.
    action: MARK_AS_OVER_ANNOTATED
    reason: Generic membrane annotation subsumed by more specific lysosomal/Golgi/endosome
      membrane annotations.

- term:
    id: GO:0033176
    label: proton-transporting V-type ATPase complex
  evidence_type: NAS
  original_reference_id: PMID:33065002
  qualifier: part_of
  review:
    summary: NAS from the structural study. Consistent with IDA annotation from
      PMID:18752060.
    action: ACCEPT
    reason: Core complex membership.

- term:
    id: GO:0048388
    label: endosomal lumen acidification
  evidence_type: NAS
  original_reference_id: PMID:32001091
  qualifier: involved_in
  review:
    summary: NAS from V-ATPase review. Endosomal lumen acidification is a core function.
    action: ACCEPT
    reason: Core V-ATPase function.

- term:
    id: GO:0051452
    label: intracellular pH reduction
  evidence_type: NAS
  original_reference_id: PMID:32001091
  qualifier: involved_in
  review:
    summary: NAS from V-ATPase review. Generic term for the acidification function.
    action: MARK_AS_OVER_ANNOTATED
    reason: Less specific than the individual lumen acidification terms; redundant and
      subsumed by more precise annotations.

- term:
    id: GO:0061795
    label: Golgi lumen acidification
  evidence_type: NAS
  original_reference_id: PMID:32001091
  qualifier: involved_in
  review:
    summary: NAS from V-ATPase review. Golgi lumen acidification is important for
      glycosylation.
    action: ACCEPT
    reason: Core V-ATPase function in Golgi.

- term:
    id: GO:1902600
    label: proton transmembrane transport
  evidence_type: NAS
  original_reference_id: PMID:33065002
  qualifier: involved_in
  review:
    summary: NAS from the structural study.
    action: ACCEPT
    reason: Core biological process.

- term:
    id: GO:0000221
    label: vacuolar proton-transporting V-type ATPase, V1 domain
  evidence_type: ISS
  original_reference_id: GO_REF:0000024
  qualifier: part_of
  review:
    summary: Ortholog-based annotation for V1 domain membership. Confirmed by cryo-EM
      structural data.
    action: ACCEPT
    reason: Core structural membership of V1 domain confirmed by PMID:33065002.
    supported_by:
    - reference_id: PMID:33065002
      supporting_text: Vesicular- or vacuolar-type adenosine triphosphatases (V-ATPases)
        are ATP-driven proton pumps comprised of a cytoplasmic V1 complex for ATP hydrolysis
        and a membrane-embedded Vo complex for proton transfer.
      reference_section_type: ABSTRACT

- term:
    id: GO:0042625
    label: ATPase-coupled ion transmembrane transporter activity
  evidence_type: NAS
  original_reference_id: PMID:8581736
  qualifier: enables
  review:
    summary: NAS from the original cloning paper (Fujiwara et al. 1995). ATP6V1F is
      a component of an ATPase-coupled ion transporter complex.
    action: ACCEPT
    reason: The ATPase-coupled ion transmembrane transporter activity is an appropriate
      molecular function annotation for a V-ATPase subunit.
    supported_by:
    - reference_id: PMID:8581736
      supporting_text: A cDNA encoding the 14-kDa subunit of vacuolar ATPase was cloned
        from human fetal brain. The sequence was composed of 680 nucleotides containing
        an open reading frame of 357 nucleotides.
      reference_section_type: ABSTRACT

- term:
    id: GO:0070062
    label: extracellular exosome
  evidence_type: HDA
  original_reference_id: PMID:19199708
  qualifier: located_in
  review:
    summary: High-throughput proteomics detection in parotid gland exosomes. Likely
      reflects membrane co-purification.
    action: MARK_AS_OVER_ANNOTATED
    reason: Exosome detection is likely artifactual; not informative for core function.

- term:
    id: GO:0070062
    label: extracellular exosome
  evidence_type: HDA
  original_reference_id: PMID:19056867
  qualifier: located_in
  review:
    summary: High-throughput proteomics detection in urinary exosomes.
    action: MARK_AS_OVER_ANNOTATED
    reason: Same reasoning as parotid exosome; likely artifactual.

- term:
    id: GO:0005829
    label: cytosol
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-1222516
  qualifier: located_in
  review:
    summary: Reactome TAS annotation. V1 F subunit can be in cytosol during regulated
      V1-V0 disassembly.
    action: KEEP_AS_NON_CORE
    reason: The V1 domain including F subunit can exist as a soluble complex in cytosol.

- term:
    id: GO:0005829
    label: cytosol
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-5252133
  qualifier: located_in
  review:
    summary: Reactome TAS annotation for cytosol.
    action: KEEP_AS_NON_CORE
    reason: Consistent.

- term:
    id: GO:0005829
    label: cytosol
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-74723
  qualifier: located_in
  review:
    summary: Reactome TAS annotation for cytosol.
    action: KEEP_AS_NON_CORE
    reason: Consistent.

- term:
    id: GO:0005829
    label: cytosol
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-917841
  qualifier: located_in
  review:
    summary: Reactome TAS annotation for cytosol.
    action: KEEP_AS_NON_CORE
    reason: Consistent.

- term:
    id: GO:0005829
    label: cytosol
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-9639286
  qualifier: located_in
  review:
    summary: Reactome TAS annotation for cytosol.
    action: KEEP_AS_NON_CORE
    reason: Consistent.

- term:
    id: GO:0005829
    label: cytosol
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-9640167
  qualifier: located_in
  review:
    summary: Reactome TAS annotation for cytosol.
    action: KEEP_AS_NON_CORE
    reason: Consistent.

- term:
    id: GO:0005829
    label: cytosol
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-9640168
  qualifier: located_in
  review:
    summary: Reactome TAS annotation for cytosol.
    action: KEEP_AS_NON_CORE
    reason: Consistent.

- term:
    id: GO:0005829
    label: cytosol
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-9640175
  qualifier: located_in
  review:
    summary: Reactome TAS annotation for cytosol.
    action: KEEP_AS_NON_CORE
    reason: Consistent.

- term:
    id: GO:0005829
    label: cytosol
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-9640195
  qualifier: located_in
  review:
    summary: Reactome TAS annotation for cytosol.
    action: KEEP_AS_NON_CORE
    reason: Consistent.

- term:
    id: GO:0005829
    label: cytosol
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-9645598
  qualifier: located_in
  review:
    summary: Reactome TAS annotation for cytosol.
    action: KEEP_AS_NON_CORE
    reason: Consistent.

- term:
    id: GO:0005829
    label: cytosol
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-9645608
  qualifier: located_in
  review:
    summary: Reactome TAS annotation for cytosol.
    action: KEEP_AS_NON_CORE
    reason: Consistent.

- term:
    id: GO:0005829
    label: cytosol
  evidence_type: TAS
  original_reference_id: Reactome:R-HSA-9646468
  qualifier: located_in
  review:
    summary: Reactome TAS annotation for cytosol.
    action: KEEP_AS_NON_CORE
    reason: Consistent.

- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:18752060
  qualifier: enables
  review:
    summary: The specific interaction underlying this annotation is the F subunit-V0
      d subunit (ATP6V0D1) interaction, which is mechanistically central to the rotary
      pump mechanism. However, generic protein binding is not informative.
    action: MARK_AS_OVER_ANNOTATED
    reason: Generic protein binding is uninformative; the specific D-F and F-d interactions
      are the mechanistically meaningful interaction, but no specific GO term captures
      this subunit-rotor interaction.
    supported_by:
    - reference_id: PMID:18752060
      supporting_text: each can pull down the central stalk's D and F subunits from
        human kidney membrane, and in vitro studies using D and F further showed that
        the interactions between these proteins and the d subunit is direct.
      reference_section_type: ABSTRACT

- term:
    id: GO:0016020
    label: membrane
  evidence_type: IDA
  original_reference_id: PMID:18752060
  qualifier: located_in
  review:
    summary: IDA from Smith et al. (2008) showing F subunit in membrane preparations.
    action: MARK_AS_OVER_ANNOTATED
    reason: Generic membrane is subsumed by more specific lysosomal/Golgi/endosome
      membrane annotations.

- term:
    id: GO:0016471
    label: vacuolar proton-transporting V-type ATPase complex
  evidence_type: IDA
  original_reference_id: PMID:18752060
  qualifier: part_of
  review:
    summary: IDA from Smith et al. (2008) demonstrating F subunit co-purification
      with the V-ATPase complex. Direct biochemical evidence for complex membership.
    action: ACCEPT
    reason: Direct experimental evidence for V-ATPase complex membership. This is the
      core complex membership annotation.
    supported_by:
    - reference_id: PMID:18752060
      supporting_text: each can pull down the central stalk's D and F subunits from
        human kidney membrane, and in vitro studies using D and F further showed that
        the interactions between these proteins and the d subunit is direct.
      reference_section_type: ABSTRACT

- term:
    id: GO:0015078
    label: proton transmembrane transporter activity
  evidence_type: NAS
  original_reference_id: PMID:8581736
  qualifier: enables
  review:
    summary: NAS from the original cloning paper.
    action: ACCEPT
    reason: Appropriate molecular function for a V-ATPase subunit.

- term:
    id: GO:1902600
    label: proton transmembrane transport
  evidence_type: NAS
  original_reference_id: PMID:8581736
  qualifier: involved_in
  review:
    summary: NAS from the original cloning paper.
    action: ACCEPT
    reason: Core biological process of V-ATPase.
    supported_by:
    - reference_id: PMID:8581736
      supporting_text: A cDNA encoding the 14-kDa subunit of vacuolar ATPase was cloned
        from human fetal brain. The sequence was composed of 680 nucleotides containing
        an open reading frame of 357 nucleotides.
      reference_section_type: ABSTRACT

references:
- id: GO_REF:0000002
  title: Gene Ontology annotation through association of InterPro records with GO terms
  findings: []
- id: GO_REF:0000024
  title: Manual transfer of experimentally-verified manual GO annotation data to orthologs
    by curator judgment of sequence similarity
  findings: []
- id: GO_REF:0000033
  title: Annotation inferences using phylogenetic trees
  findings: []
- id: GO_REF:0000044
  title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location
    vocabulary mapping, accompanied by conservative changes to GO terms applied by UniProt
  findings: []
- id: GO_REF:0000107
  title: Automatic transfer of experimentally verified manual GO annotation data to
    orthologs using Ensembl Compara
  findings: []
- id: PMID:18752060
  title: The d subunit plays a central role in human vacuolar H(+)-ATPases.
  findings:
  - statement: Human V-ATPase F subunit directly interacts with d1 and d2 V0 subunits;
      F and D are pulled down by d1/d2 from human kidney membrane; confirmed direct
      D-F and F-d interactions; F forms part of the central stalk.
- id: PMID:19056867
  title: Large-scale proteomics and phosphoproteomics of urinary exosomes.
  findings:
  - statement: ATP6V1F detected in urinary exosomes by mass spectrometry.
- id: PMID:19199708
  title: Proteomic analysis of human parotid gland exosomes by multidimensional protein
    identification technology (MudPIT).
  findings:
  - statement: ATP6V1F detected in parotid gland exosome proteome.
- id: PMID:32001091
  title: Structure and Roles of V-type ATPases.
  findings:
  - statement: Comprehensive review of V-ATPase structure; F subunit is part of central rotor.
- id: PMID:32296183
  title: A reference map of the human binary protein interactome.
  findings:
  - statement: ATP6V1F detected in binary interactome map.
- id: PMID:33065002
  title: Structures of a Complete Human V-ATPase Reveal Mechanisms of Its Assembly.
  findings:
  - statement: Cryo-EM structures of complete human V-ATPase; F subunit resolved as
      part of the central DF rotor at near-atomic resolution.
- id: PMID:33961781
  title: Dual proteome-scale networks reveal cell-specific remodeling of the human
    interactome.
  findings:
  - statement: ATP6V1F detected in proteome-scale interactome study.
- id: PMID:35271311
  title: 'OpenCell: Endogenous tagging for the cartography of human cellular organization.'
  findings:
  - statement: ATP6V1F localization mapped by endogenous tagging.
- id: PMID:8581736
  title: Cloning, sequencing and expression of a novel cDNA encoding human vacuolar
    ATPase (14-kDa subunit).
  findings:
  - statement: Human V-ATPase F subunit (14 kDa) cloned from fetal brain; ubiquitous
      expression in human tissues; high sequence conservation with insect orthologs.
- id: Reactome:R-HSA-1222516
  title: Intraphagosomal pH is lowered to 5 by V-ATPase
  findings: []
- id: Reactome:R-HSA-5252133
  title: ATP6AP1 binds V-ATPase
  findings: []
- id: Reactome:R-HSA-74723
  title: Endosome acidification
  findings: []
- id: Reactome:R-HSA-917841
  title: Acidification of Tf:TfR1 containing endosome
  findings: []
- id: Reactome:R-HSA-9639286
  title: RRAGC,D exchanges GTP for GDP
  findings: []
- id: Reactome:R-HSA-9640167
  title: RRAGA,B exchanges GDP for GTP
  findings: []
- id: Reactome:R-HSA-9640168
  title: v-ATPase:Ragulator:RRAGA,B:GTP:RRAGC,D:GDP:SLC38A9:Arginine dissociates yielding
    v-ATPase:Ragulator:RRAGA,B:GTP:RRAGC,D:GDP and SLC38A9:Arginine
  findings: []
- id: Reactome:R-HSA-9640175
  title: v-ATPase:Ragulator:RagA,B:GDP:RagC,D:GDP binds SLC38A9:Arginine
  findings: []
- id: Reactome:R-HSA-9640195
  title: RRAGA,B hydrolyzes GTP
  findings: []
- id: Reactome:R-HSA-9645598
  title: RRAGC,D hydrolyzes GTP
  findings: []
- id: Reactome:R-HSA-9645608
  title: v-ATPase:Ragulator:RRAGA,B:GTP:RRAGC,D:GDP binds mTORC1
  findings: []
- id: Reactome:R-HSA-9646468
  title: mTORC1 binds RHEB:GTP
  findings: []

core_functions:
- description: Central rotor component of the V1 sector of the vacuolar-type H+-ATPase.
    Together with subunit D, forms the DF central stalk that transmits ATP hydrolysis
    energy from the catalytic A3B3 hexamer to the V0 c-ring, enabling proton translocation
    across organelle membranes. Essential for lysosomal, endosomal, and Golgi acidification.
    The smallest V1 subunit (13 kDa; 119 amino acids) and ubiquitously expressed.
  contributes_to_molecular_function:
    id: GO:0046961
    label: proton-transporting ATPase activity, rotational mechanism
  directly_involved_in:
  - id: GO:1902600
    label: proton transmembrane transport
  locations:
  - id: GO:0005765
    label: lysosomal membrane
  supported_by:
  - reference_id: PMID:33065002
    supporting_text: Vesicular- or vacuolar-type adenosine triphosphatases (V-ATPases)
      are ATP-driven proton pumps comprised of a cytoplasmic V1 complex for ATP hydrolysis
      and a membrane-embedded Vo complex for proton transfer.
    reference_section_type: ABSTRACT
  - reference_id: PMID:18752060
    supporting_text: Energy from this reaction drives the rotation of a central stalk
      consisting of V1 subunits D and F and this is coupled to rotation of the V0 proteolipid
      ring made up of c, c′ and c″.
    reference_section_type: INTRODUCTION

suggested_questions:
- question: What is the precise structural role of the F subunit in coordinating the
    DF central rotor with both the A3B3 head and the V0 d subunit at the rotor-stator
    junction?
  experts: []
- question: Are there post-translational modifications on subunit F that regulate
    V-ATPase assembly or activity, particularly in response to nutrient availability?
  experts: []
- question: Do the two alternatively spliced isoforms of ATP6V1F differ in their
    incorporation into the V-ATPase complex or in their subcellular targeting?
  experts: []

suggested_experiments:
- hypothesis: The F subunit makes distinct contacts with V0 d subunit at different
    stages of the rotary catalytic cycle.
  description: Cryo-EM analysis of V-ATPase in multiple rotational states at higher
    resolution to define the precise contacts between F subunit and the V0 d subunit
    at different stages of the catalytic cycle.
  experiment_type: structural biology
- hypothesis: Post-translational modifications on the F subunit regulate V-ATPase
    assembly or activity.
  description: Identification of post-translational modifications on the F subunit
    using quantitative mass spectrometry under varying nutrient conditions to assess
    regulation of V-ATPase activity.
  experiment_type: quantitative mass spectrometry
- hypothesis: ATP6V1F isoforms differ in V-ATPase incorporation or subcellular function.
  description: CRISPR-based isoform knockout combined with rescue experiments using
    individual isoforms to determine whether either isoform has a distinct functional
    role in V-ATPase biology.
  experiment_type: CRISPR functional genomics
