BAR/IMD domain-containing adapter protein 2 (IRSp53) is a curvature-sensitive membrane-cytoskeleton adaptor that couples plasma membrane shape to actin remodeling. The protein contains an N-terminal I-BAR/IMD domain that senses and generates negative membrane curvature by binding PI(4,5)P2-rich membranes, a central CRIB/proline-rich region for small GTPase (Rac1/Cdc42) coupling, and a C-terminal SH3 domain that recruits actin nucleation-promoting factors (WAVE, N-WASP, Eps8, Mena/VASP). IRSp53 integrates Rho-family GTPase signaling with actin network assembly to drive filopodia, lamellipodia, and membrane ruffles, and is held in an autoinhibited conformation by 14-3-3 binding to a phosphorylated region between the CRIB and SH3 modules. The protein is enriched at plasma membrane protrusions and at sites of negative membrane curvature, where it couples membrane shape to a Rac1/Arp2/3 actin burst that restores the membrane's resting topography. In neurons it is a postsynaptic density protein that binds PSD-95, PSD-93 and the Shank scaffolds and drives dendritic spine morphogenesis; loss of function disrupts cortical neuronal migration, and variants that break the autoinhibited state cause developmental and epileptic encephalopathy.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
| GO:0030838 positive regulation of actin filament polymerization | IBA GO_REF:0000033 | ACCEPT | Summary: IRSp53 promotes actin polymerization by recruiting nucleation-promoting factors via its SH3 domain to sites of membrane curvature. This is a well-established core function. Reason: Deep research confirms IRSp53 recruits WAVE/Arp2/3 and triggers actin polymerization bursts at sites of membrane curvature. The SH3 domain binds proline-rich regions of actin effectors. Supporting Evidence: PMID:37747150 These evaginations are recognized by I-BAR proteins, which triggers a burst of actin polymerization mediated by Rac1 and Arp2/3. PMID:11130076 IRSp53 is essential for Rac to induce membrane ruffling, probably because it recruits WAVE, which stimulates actin polymerization mediated by the Arp2/3 complex |
| GO:0051017 actin filament bundle assembly | IBA GO_REF:0000033 | ACCEPT | Summary: IRSp53's I-BAR domain can directly bundle actin filaments, contributing to filopodial structure. This is a core molecular function. Reason: UniProt function notes that the isolated IMD domain can induce actin bundling and filopodia formation. Participates in actin bundling when associated with EPS8. Supporting Evidence: PMID:14752106 The IMD alone, derived from either IRSp53 or MIM, induced filopodia in HeLa cells and the formation of tightly packed parallel F-actin bundles in vitro |
| GO:0051764 actin crosslink formation | IBA GO_REF:0000033 | ACCEPT | Summary: Actin crosslink formation is closely related to bundling activity. IRSp53-EPS8 complex promotes actin bundling and crosslinking. Reason: Supported by experimental evidence showing IRSp53 works with EPS8 in synergistic actin bundling activity that promotes filopodial protrusions. Supporting Evidence: PMID:17115031 Eps8 activates and synergizes with IRSp53 in mediating actin bundling in vitro, enhancing IRSp53-dependent membrane extensions in vivo |
| GO:0001726 ruffle | IEA GO_REF:0000044 | ACCEPT | Summary: Ruffle localization is well-supported. IRSp53 is detected close to membrane ruffles and is essential for Rac1-mediated membrane ruffling. Reason: UniProt subcellular location explicitly states detection in filopodia and close to membrane ruffles. IRSp53 is necessary for RAC1-mediated membrane ruffling. Supporting Evidence: PMID:11130076 IRSp53 is an essential intermediate between Rac and WAVE in the regulation of membrane ruffling |
| GO:0005737 cytoplasm | IEA GO_REF:0000044 | ACCEPT | Summary: Cytoplasm localization is well-established and broader than cytosol. Reason: Consistent with cytosol annotation and UniProt subcellular location. IRSp53 localizes throughout the cytoplasm and at membrane-associated structures. |
| GO:0005856 cytoskeleton | IEA GO_REF:0000044 | ACCEPT | Summary: Cytoskeleton localization supported by IDA evidence showing colocalization with actin cytoskeleton. Reason: IRSp53 colocalizes with actin cytoskeleton (IDA from PMID:19366662). This is expected given its role as an actin-membrane adaptor. |
| GO:0007009 plasma membrane organization | IEA GO_REF:0000002 | ACCEPT | Summary: IRSp53 is directly involved in plasma membrane organization through its I-BAR domain which senses and induces membrane curvature. Reason: Core function. Deep research shows IRSp53 plays a central role in membrane shape homeostasis at the nanoscale, detecting curvature and coordinating membrane remodeling. Supporting Evidence: PMID:37747150 The actin polymerization burst subsequently re-flattens the evagination, completing the mechanochemical feedback loop. |
| GO:0008093 cytoskeletal anchor activity | IEA GO_REF:0000002 | ACCEPT | Summary: IRSp53 anchors actin cytoskeleton to the plasma membrane through its I-BAR domain. This is a core molecular function. Reason: The I-BAR domain binds membranes while the SH3 domain recruits actin effectors, creating a molecular bridge. Supported by TAS evidence from PMID:10343108. Supporting Evidence: PMID:10343108 Identification of BAIAP2 (BAI-associated protein 2), a novel human homologue of hamster IRSp53, whose SH3 domain interacts with the cytoplasmic domain of BAI1 |
| GO:0016020 membrane | IEA GO_REF:0000044 | ACCEPT | Summary: Membrane localization is well-established but generic. Reason: UniProt indicates peripheral membrane protein. More specific term (plasma membrane) is also annotated with better evidence. |
| GO:0030175 filopodium | IEA GO_REF:0000044 | ACCEPT | Summary: Filopodium localization is a core aspect of IRSp53 function. The protein is essential for CDC42-mediated filopodia formation. Reason: UniProt explicitly lists filopodium as a subcellular location. IRSp53 acts synergistically with ENAH and EPS8 to promote filopodia formation. Supporting Evidence: PMID:11696321 Cdc42 induces filopodia by promoting the formation of an IRSp53:Mena complex |
| GO:0032956 regulation of actin cytoskeleton organization | IEA GO_REF:0000002 | ACCEPT | Summary: This is a core biological process for IRSp53. The protein coordinates actin organization downstream of Rho GTPases. Reason: Supported by IMP evidence (PMID:19366662). IRSp53 is necessary for CDC42-mediated and RAC1-mediated reorganization of actin cytoskeleton. Supporting Evidence: PMID:19366662 Insulin receptor tyrosine kinase substrate links the E. coli O157:H7 actin assembly effectors Tir and EspF(U) during pedestal formation |
| GO:0070064 proline-rich region binding | IEA GO_REF:0000117 | ACCEPT | Summary: The SH3 domain of IRSp53 binds proline-rich regions of effector proteins. This is experimentally validated. Reason: Supported by IDA evidence (PMID:19366662). The SH3 domain mediates interactions with WAVE, N-WASP, Eps8, Mena/VASP through proline-rich motifs. Supporting Evidence: PMID:11130076 carboxy-terminal Src-homology-3 domain of IRSp53 binds to WAVE |
| GO:0098609 cell-cell adhesion | IEA GO_REF:0000108 | KEEP AS NON CORE | Summary: Inferred from cadherin binding annotation. IRSp53 is found at adherens junctions and binds cadherin. Reason: While IRSp53 localizes to adherens junctions (HDA PMID:25468996), cell-cell adhesion is not a primary function. The protein's core role is membrane-actin coupling, not adhesion per se. |
| GO:0005515 protein binding | IPI PMID:11130076 IRSp53 is an essential intermediate between Rac and WAVE in ... | REMOVE | Summary: Interaction with WAVE complex members (WASF1, WASF2). This should be captured as adaptor activity or WAVE complex binding. Reason: Generic protein binding does not convey the functional significance. IRSp53 functions as an adapter linking Rac to WAVE in membrane ruffling. Proposed replacements: protein-macromolecule adaptor activity Supporting Evidence: PMID:11130076 IRSp53 is an essential intermediate between Rac and WAVE in the regulation of membrane ruffling. |
| GO:0005515 protein binding | IPI PMID:11157984 Cdc42Hs facilitates cytoskeletal reorganization and neurite ... | REMOVE | Summary: Interaction with CDC42. Should be annotated as small GTPase binding. Reason: The interaction with CDC42 is functionally significant for activation of IRSp53. More informative to use small GTPase binding. Proposed replacements: small GTPase binding Supporting Evidence: PMID:11157984 An IRS-58(1267N) mutant unable to bind Cdc42Hs failed to localize with F-actin to induce neurite outgrowth or significant cytoskeletal reorganization. |
| GO:0005515 protein binding | IPI PMID:11696321 Cdc42 induces filopodia by promoting the formation of an IRS... | REMOVE | Summary: Interactions with RAC1 and ENAH (Mena). These represent core functional interactions that should use specific terms. Reason: RAC1 binding should be small GTPase binding; ENAH interaction relates to filopodia formation via adaptor function. Proposed replacements: small GTPase binding protein-macromolecule adaptor activity Supporting Evidence: PMID:11696321 Cdc42 induces filopodia by promoting the formation of an IRSp53:Mena complex. |
| GO:0005515 protein binding | IPI PMID:12598619 Novel espin actin-bundling proteins are localized to Purkinj... | REMOVE | Summary: Interaction with espin proteins in dendritic spines. Non-informative term. Reason: Should use adaptor activity terms to capture functional significance. Proposed replacements: protein-macromolecule adaptor activity Supporting Evidence: PMID:12598619 Novel espin actin-bundling proteins are localized to Purkinje cell dendritic spines and bind the Src homology 3 adapter protein insulin receptor substrate p53. |
| GO:0005515 protein binding | IPI PMID:15289329 IRSp53/Eps8 complex is important for positive regulation of ... | REMOVE | Summary: Interactions with EPS8 and ABI1. These are functionally important for Rac regulation and cancer cell motility. Reason: EPS8-IRSp53 complex has specific actin bundling function. Should be captured with more specific MF terms. Proposed replacements: protein-macromolecule adaptor activity Supporting Evidence: PMID:15289329 IRSp53/Eps8 complex is important for positive regulation of Rac and cancer cell motility/invasiveness. |
| GO:0005515 protein binding | IPI PMID:16189514 Towards a proteome-scale map of the human protein-protein in... | REMOVE | Summary: Large-scale proteome mapping. Generic annotation from HTP study. Reason: Non-informative generic term from high-throughput study. No replacement term is proposed. This row's evidence is a high-throughput affinity or interactome screen, and naming a specific molecular function from bulk binding data alone would be inferring function from an interaction list rather than from an assay of the function. Nothing is lost: the informative terms this gene needs (GO:0030674 adaptor activity, GO:0070064 proline-rich region binding, GO:0097110 scaffold protein binding, GO:0031267 small GTPase binding) are each asserted elsewhere in this review on evidence that actually supports them. Supporting Evidence: PMID:16189514 Towards a proteome-scale map of the human protein-protein interaction network. |
| GO:0005515 protein binding | IPI PMID:17003044 The RAC binding domain/IRSp53-MIM homology domain of IRSp53 ... | REMOVE | Summary: RAC1 binding via RCB/IMD domain. Important for membrane deformation. Reason: Should use small GTPase binding to capture this interaction. Proposed replacements: small GTPase binding Supporting Evidence: PMID:17003044 The RAC binding domain/IRSp53-MIM homology domain of IRSp53 induces RAC-dependent membrane deformation. |
| GO:0005515 protein binding | IPI PMID:18448434 The Cdc42 effector IRSp53 generates filopodia by coupling me... | REMOVE | Summary: CDC42 effector function. IRSp53 generates filopodia by coupling membrane protrusion with actin dynamics. Reason: Should use small GTPase binding and adaptor activity. Proposed replacements: small GTPase binding Supporting Evidence: PMID:18448434 The Cdc42 effector IRSp53 generates filopodia by coupling membrane protrusion with actin dynamics. |
| GO:0005515 protein binding | IPI PMID:19171758 Kank attenuates actin remodeling by preventing interaction b... | REMOVE | Summary: Interactions with ACTB, RAC1 and KANK1 from the study showing KANK1 attenuates actin remodeling by preventing the IRSp53-Rac1 interaction. Reason: Generic protein binding is removed per convention, replaced by the term for the interaction the study actually characterizes. GO:0003779 actin binding was previously proposed here as well and has been withdrawn: recovering ACTB in a co-immunoprecipitation from cells is not evidence that IRSp53 binds actin directly, since an adaptor pulls down whatever its partners are attached to. Actin binding is instead asserted once, on its real in vitro source (PMID:14752106), as a NEW row below. Proposed replacements: small GTPase binding Supporting Evidence: PMID:19171758 Kank attenuates actin remodeling by preventing interaction between IRSp53 and Rac1. |
| GO:0005515 protein binding | IPI PMID:19460367 SPIN90-IRSp53 complex participates in Rac-induced membrane r... | REMOVE | Summary: SPIN90-IRSp53 complex in Rac-induced membrane ruffling. Reason: Non-informative generic term. Proposed replacements: protein-macromolecule adaptor activity Supporting Evidence: PMID:19460367 SPIN90-IRSp53 complex participates in Rac-induced membrane ruffling. |
| GO:0005515 protein binding | IPI PMID:19564905 Eps8 regulates axonal filopodia in hippocampal neurons in re... | REMOVE | Summary: EPS8 interaction in axonal filopodia. Reason: Non-informative generic term. Proposed replacements: protein-macromolecule adaptor activity Supporting Evidence: PMID:19564905 Eps8 regulates axonal filopodia in hippocampal neurons in response to brain-derived neurotrophic factor (BDNF). |
| GO:0005515 protein binding | IPI PMID:19933840 Regulation of IRSp53-dependent filopodial dynamics by antago... | REMOVE | Summary: 14-3-3 (YWHAZ) binding regulates IRSp53 filopodial dynamics. Reason: Non-informative generic term. 14-3-3 binding is regulatory. Proposed replacements: scaffold protein binding Supporting Evidence: PMID:19933840 Regulation of IRSp53-dependent filopodial dynamics by antagonism between 14-3-3 binding and SH3-mediated localization. |
| GO:0005515 protein binding | IPI PMID:20936779 A human MAP kinase interactome. | REMOVE | Summary: CDC42 interaction from MAP kinase interactome study. Reason: Should use small GTPase binding. No replacement term is proposed. This row's evidence is a high-throughput affinity or interactome screen, and naming a specific molecular function from bulk binding data alone would be inferring function from an interaction list rather than from an assay of the function. Nothing is lost: the informative terms this gene needs (GO:0030674 adaptor activity, GO:0070064 proline-rich region binding, GO:0097110 scaffold protein binding, GO:0031267 small GTPase binding) are each asserted elsewhere in this review on evidence that actually supports them. Supporting Evidence: PMID:20936779 A human MAP kinase interactome. |
| GO:0005515 protein binding | IPI PMID:21311754 Rho GTPase Cdc42 is a direct interacting partner of Adenomat... | REMOVE | Summary: CDC42 interaction related to APC localization. Reason: Should use small GTPase binding. Proposed replacements: small GTPase binding Supporting Evidence: PMID:21311754 Rho GTPase Cdc42 is a direct interacting partner of Adenomatous Polyposis Coli protein and can alter its cellular localization. |
| GO:0005515 protein binding | IPI PMID:24189400 Perturbation of the mutated EGFR interactome identifies vuln... | REMOVE | Summary: EGFR interactome perturbation study. Reason: Non-informative generic term from HTP study. No replacement term is proposed. This row's evidence is a high-throughput affinity or interactome screen, and naming a specific molecular function from bulk binding data alone would be inferring function from an interaction list rather than from an assay of the function. Nothing is lost: the informative terms this gene needs (GO:0030674 adaptor activity, GO:0070064 proline-rich region binding, GO:0097110 scaffold protein binding, GO:0031267 small GTPase binding) are each asserted elsewhere in this review on evidence that actually supports them. Supporting Evidence: PMID:24189400 Perturbation of the mutated EGFR interactome identifies vulnerabilities and resistance mechanisms. |
| GO:0005515 protein binding | IPI PMID:24658140 The mammalian-membrane two-hybrid assay (MaMTH) for probing ... | REMOVE | Summary: EGFR interaction from MaMTH assay. Reason: Non-informative generic term. No replacement term is proposed. This row's evidence is a high-throughput affinity or interactome screen, and naming a specific molecular function from bulk binding data alone would be inferring function from an interaction list rather than from an assay of the function. Nothing is lost: the informative terms this gene needs (GO:0030674 adaptor activity, GO:0070064 proline-rich region binding, GO:0097110 scaffold protein binding, GO:0031267 small GTPase binding) are each asserted elsewhere in this review on evidence that actually supports them. Supporting Evidence: PMID:24658140 The mammalian-membrane two-hybrid assay (MaMTH) for probing membrane-protein interactions in human cells. |
| GO:0005515 protein binding | IPI PMID:25416956 A proteome-scale map of the human interactome network. | REMOVE | Summary: Multiple interactions from proteome-scale interactome study. Reason: Non-informative generic term from HTP study. No replacement term is proposed. This row's evidence is a high-throughput affinity or interactome screen, and naming a specific molecular function from bulk binding data alone would be inferring function from an interaction list rather than from an assay of the function. Nothing is lost: the informative terms this gene needs (GO:0030674 adaptor activity, GO:0070064 proline-rich region binding, GO:0097110 scaffold protein binding, GO:0031267 small GTPase binding) are each asserted elsewhere in this review on evidence that actually supports them. Supporting Evidence: PMID:25416956 A proteome-scale map of the human interactome network. |
| GO:0005515 protein binding | IPI PMID:25519916 The EHEC-host interactome reveals novel targets for the tran... | REMOVE | Summary: Interaction with E.coli Tir protein (EHEC host-pathogen interaction). Reason: While functionally significant for bacterial pathogenesis, protein binding is too generic. This represents adaptor activity hijacked by pathogen. Proposed replacements: protein-macromolecule adaptor activity Supporting Evidence: PMID:25519916 The EHEC-host interactome reveals novel targets for the translocated intimin receptor. |
| GO:0005515 protein binding | IPI PMID:25814554 Phospho-tyrosine dependent protein-protein interaction netwo... | REMOVE | Summary: Phospho-tyrosine dependent interaction network. Reason: Non-informative generic term. No replacement term is proposed. This row's evidence is a high-throughput affinity or interactome screen, and naming a specific molecular function from bulk binding data alone would be inferring function from an interaction list rather than from an assay of the function. Nothing is lost: the informative terms this gene needs (GO:0030674 adaptor activity, GO:0070064 proline-rich region binding, GO:0097110 scaffold protein binding, GO:0031267 small GTPase binding) are each asserted elsewhere in this review on evidence that actually supports them. Supporting Evidence: PMID:25814554 Phospho-tyrosine dependent protein-protein interaction network. |
| GO:0005515 protein binding | IPI PMID:26496610 A human interactome in three quantitative dimensions organiz... | REMOVE | Summary: Interaction with BAIAP2L1 from quantitative interactome study. Reason: Non-informative generic term. No replacement term is proposed. This row's evidence is a high-throughput affinity or interactome screen, and naming a specific molecular function from bulk binding data alone would be inferring function from an interaction list rather than from an assay of the function. Nothing is lost: the informative terms this gene needs (GO:0030674 adaptor activity, GO:0070064 proline-rich region binding, GO:0097110 scaffold protein binding, GO:0031267 small GTPase binding) are each asserted elsewhere in this review on evidence that actually supports them. Supporting Evidence: PMID:26496610 A human interactome in three quantitative dimensions organized by stoichiometries and abundances. |
| GO:0005515 protein binding | IPI PMID:28514442 Architecture of the human interactome defines protein commun... | REMOVE | Summary: 14-3-3 protein interactions. Reason: Non-informative generic term. No replacement term is proposed. This row's evidence is a high-throughput affinity or interactome screen, and naming a specific molecular function from bulk binding data alone would be inferring function from an interaction list rather than from an assay of the function. Nothing is lost: the informative terms this gene needs (GO:0030674 adaptor activity, GO:0070064 proline-rich region binding, GO:0097110 scaffold protein binding, GO:0031267 small GTPase binding) are each asserted elsewhere in this review on evidence that actually supports them. Supporting Evidence: PMID:28514442 Architecture of the human interactome defines protein communities and disease networks. |
| GO:0005515 protein binding | IPI PMID:31980649 Extensive rewiring of the EGFR network in colorectal cancer ... | REMOVE | Summary: EGFR network in KRAS-mutant colorectal cancer. Reason: Non-informative generic term from HTP study. No replacement term is proposed. This row's evidence is a high-throughput affinity or interactome screen, and naming a specific molecular function from bulk binding data alone would be inferring function from an interaction list rather than from an assay of the function. Nothing is lost: the informative terms this gene needs (GO:0030674 adaptor activity, GO:0070064 proline-rich region binding, GO:0097110 scaffold protein binding, GO:0031267 small GTPase binding) are each asserted elsewhere in this review on evidence that actually supports them. Supporting Evidence: PMID:31980649 Extensive rewiring of the EGFR network in colorectal cancer cells expressing transforming levels of KRAS(G13D). |
| GO:0005515 protein binding | IPI PMID:33961781 Dual proteome-scale networks reveal cell-specific remodeling... | REMOVE | Summary: Dual proteome-scale interactome study. Reason: Non-informative generic term from HTP study. No replacement term is proposed. This row's evidence is a high-throughput affinity or interactome screen, and naming a specific molecular function from bulk binding data alone would be inferring function from an interaction list rather than from an assay of the function. Nothing is lost: the informative terms this gene needs (GO:0030674 adaptor activity, GO:0070064 proline-rich region binding, GO:0097110 scaffold protein binding, GO:0031267 small GTPase binding) are each asserted elsewhere in this review on evidence that actually supports them. Supporting Evidence: PMID:33961781 Dual proteome-scale networks reveal cell-specific remodeling of the human interactome. |
| GO:0005515 protein binding | IPI PMID:35271311 OpenCell: Endogenous tagging for the cartography of human ce... | REMOVE | Summary: OpenCell endogenous tagging study. Reason: Non-informative generic term from HTP study. No replacement term is proposed. This row's evidence is a high-throughput affinity or interactome screen, and naming a specific molecular function from bulk binding data alone would be inferring function from an interaction list rather than from an assay of the function. Nothing is lost: the informative terms this gene needs (GO:0030674 adaptor activity, GO:0070064 proline-rich region binding, GO:0097110 scaffold protein binding, GO:0031267 small GTPase binding) are each asserted elsewhere in this review on evidence that actually supports them. Supporting Evidence: PMID:35271311 OpenCell: Endogenous tagging for the cartography of human cellular organization. |
| GO:0005515 protein binding | IPI PMID:35384245 Physical and functional interactome atlas of human receptor ... | REMOVE | Summary: RTK interactome study. Reason: Non-informative generic term from HTP study. No replacement term is proposed. This row's evidence is a high-throughput affinity or interactome screen, and naming a specific molecular function from bulk binding data alone would be inferring function from an interaction list rather than from an assay of the function. Nothing is lost: the informative terms this gene needs (GO:0030674 adaptor activity, GO:0070064 proline-rich region binding, GO:0097110 scaffold protein binding, GO:0031267 small GTPase binding) are each asserted elsewhere in this review on evidence that actually supports them. Supporting Evidence: PMID:35384245 Physical and functional interactome atlas of human receptor tyrosine kinases. |
| GO:0005515 protein binding | IPI PMID:36931259 A central chaperone-like role for 14-3-3 proteins in human c... | REMOVE | Summary: 14-3-3 protein chaperone-like role study. Reason: Non-informative generic term. No replacement term is proposed. This row's evidence is a high-throughput affinity or interactome screen, and naming a specific molecular function from bulk binding data alone would be inferring function from an interaction list rather than from an assay of the function. Nothing is lost: the informative terms this gene needs (GO:0030674 adaptor activity, GO:0070064 proline-rich region binding, GO:0097110 scaffold protein binding, GO:0031267 small GTPase binding) are each asserted elsewhere in this review on evidence that actually supports them. Supporting Evidence: PMID:36931259 A central chaperone-like role for 14-3-3 proteins in human cells. |
| GO:0042802 identical protein binding | IPI PMID:11696321 Cdc42 induces filopodia by promoting the formation of an IRS... | MODIFY | Summary: IRSp53 forms homodimers via its I-BAR domain. This is functionally important for membrane binding and actin bundling. Reason: Homodimerization is the more specific and more accurate term: the I-BAR domain is an obligate dimer and that dimer is the functional unit. The evidence for the dimerization itself is structural rather than from this paper, so it is cited explicitly below. Proposed replacements: protein homodimerization activity Supporting Evidence: PMID:11696321 Cdc42 induces filopodia by promoting the formation of an IRSp53:Mena complex. |
| GO:0042802 identical protein binding | IPI PMID:14752106 A novel actin bundling/filopodium-forming domain conserved i... | MODIFY | Summary: Homodimer formation via IMD domain, important for actin bundling. Reason: Same replacement as the row above. This paper works with the isolated IMD and shows it is the domain that bundles actin and forms filopodia; the structural demonstration that the domain is a dimer in solution is cited below. Proposed replacements: protein homodimerization activity Supporting Evidence: PMID:14752106 the N-terminal predicted helical stretch of 250 amino acids of IRSp53 is an evolutionarily conserved F-actin bundling domain involved in filopodium formation |
| GO:0042802 identical protein binding | IPI PMID:25416956 A proteome-scale map of the human interactome network. | MODIFY | Summary: Self-interaction from large-scale interactome study. Reason: The replacement term is right, but this row's evidence is a proteome-scale interactome screen, which recovers a self-interaction without showing the protein is a constitutive dimer. The replacement rests on the structural evidence cited below rather than on the screen. Proposed replacements: protein homodimerization activity Supporting Evidence: PMID:25416956 A proteome-scale map of the human interactome network. |
| GO:0001221 transcription coregulator binding | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: This IEA traces to a real experimental annotation, not to a modelling artefact. The Ensembl ortholog transfer derives from rat Baiap2 (UniProtKB:Q6GMN2), where RGD made the annotation IPI from PMID:10332026, the DRPLA paper showing that atrophin-1 binds the IRSp53 SH3 domain through a proline-rich region adjacent to its polyglutamine tract. Atrophin-1 (ATN1) is a transcriptional corepressor, so the interaction is correctly typed as transcription coregulator binding. Reason: Corrected from MARK_AS_OVER_ANNOTATED, whose rationale -- not supported by deep research or UniProt annotations -- misdescribed the provenance. This is a specifically-typed binding resting on a curator's reading of a focused paper, and per the repository rule an experimental annotation is not overruled from an abstract. It is non-core because IRSp53's core activity is curvature-sensitive membrane-actin coupling; binding a polyglutamine-tract corepressor through the SH3 domain is a partner interaction, not evidence that IRSp53 acts in transcriptional coregulation. Worth noting for future passes: human GOA has since retired its own generic GO:0005515 row citing PMID:10332026, so this transferred term is now the only place the atrophin-1 interaction is recorded for BAIAP2, which is a further reason not to discard it. Supporting Evidence: PMID:10332026 Dentatorubral-pallidoluysian atrophy protein interacts through a proline-rich region near polyglutamine with the SH3 domain of an insulin receptor tyrosine kinase substrate. |
| GO:0005874 microtubule | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Traced to rat Baiap2 (UniProtKB:Q6GMN2), where RGD annotated this IDA from PMID:24639075, a pre-embedding immunogold electron-microscopy survey of IRSp53 in rat brain. The observation is direct: in large dendritic shafts the gold particles lay along microtubules. This is an experimental localization, not an ortholog-transfer artefact. Reason: 'The previous rationale here was wrong on provenance, so the call is corrected rather than defended. Immunogold proximity in dendritic shafts is real evidence of where the protein sits, but it does not make IRSp53 a microtubule-associated protein: the same study concentrates the label in dendritic spines at the PSD, and every characterized IRSp53 activity (I-BAR curvature sensing, SH3 recruitment of actin nucleators, Rac1/Cdc42 coupling) is actin-directed. Kept as a non-core localization.' Supporting Evidence: PMID:24639075 Intracellular labeling was observed in somata, where particles were associated with rough endoplasmic reticulum and Golgi apparatus; and large dendritic shafts, where it was typically associated with microtubules |
| GO:0010976 positive regulation of neuron projection development | IEA GO_REF:0000107 | ACCEPT | Summary: IRSp53 promotes neurite outgrowth and dendritic spine formation. Reason: Supported by literature. UniProt notes a role in neurite growth. IRSp53 is enriched at dendritic spines. Supporting Evidence: PMID:11157984 Cdc42Hs facilitates cytoskeletal reorganization and neurite outgrowth by localizing the 58-kD insulin receptor substrate to filamentous actin |
| GO:0014069 postsynaptic density | IEA GO_REF:0000107 | ACCEPT | Summary: IRSp53 localizes to postsynaptic density and interacts with SHANK scaffold proteins. Reason: UniProt documents interactions with SHANK1, SHANK2, SHANK3 at postsynaptic sites. Supporting Evidence: PMID:12504591 The insulin receptor substrate IRSp53 links postsynaptic shank1 to the small G-protein cdc42 |
| GO:0030027 lamellipodium | IEA GO_REF:0000107 | ACCEPT | Summary: IRSp53 is involved in lamellipodium formation through Rac1-WAVE signaling. Reason: Deep research confirms IRSp53 functions at lamellipodial edges. Supporting Evidence: PMID:11130076 IRSp53 is an essential intermediate between Rac and WAVE in the regulation of membrane ruffling |
| GO:0030141 secretory granule | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Traced to rat Baiap2 (UniProtKB:Q6GMN2), where RGD annotated this IDA from PMID:17120053, which reports that secretory granules of hypophyseal and pancreatic endocrine cells contain proteins of the neuronal postsynaptic density. IRSp53 is a PSD protein, so its detection in that granule proteome is a deliberate experimental finding rather than transfer noise. Reason: 'The previous rationale asserted the annotation was undocumented and possibly ortholog-derived; both are incorrect, so the call is corrected. Retained as non-core: the finding is a compartment co-occurrence in endocrine tissue and carries no evidence that IRSp53 performs a function in secretory granule biology. Note the cached record for PMID:17120053 is abstract-only, so the supporting text is not quoted here.' |
| GO:0030165 PDZ domain binding | IEA GO_REF:0000107 | ACCEPT | Summary: PDZ domain binding is supported by SHANK protein interactions which contain PDZ domains. Reason: IRSp53 interacts with SHANK1, SHANK2, SHANK3 which are PDZ domain-containing scaffold proteins. |
| GO:0030182 neuron differentiation | IEA GO_REF:0000120 | KEEP AS NON CORE | Summary: IRSp53 plays a role in neuronal development, particularly in dendritic spine morphogenesis. Reason: While supported, this is a broad developmental process. Core function is actin-membrane coupling, which contributes to neuronal morphology. |
| GO:0035418 protein localization to synapse | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: IRSp53 localizes to synapses and may help recruit other proteins. Reason: Synaptic function is established but is not the primary function of IRSp53, which operates in multiple cell types. |
| GO:0043025 neuronal cell body | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Neuronal cell body localization is expected given cytoplasmic distribution in neurons. Reason: Not a site of primary function - IRSp53 acts at membrane protrusions. |
| GO:0043197 dendritic spine | IEA GO_REF:0000107 | ACCEPT | Summary: Dendritic spine localization is well-documented for IRSp53. Reason: Deep research confirms IRSp53 is enriched at dendritic spine structures. Interacts with SHANK proteins at this location. Supporting Evidence: PMID:24639075 Labeling concentrated selectively in dendritic spines, where it was associated with the postsynaptic density (PSD). |
| GO:0043198 dendritic shaft | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Dendritic shaft localization is consistent with neuronal expression. Reason: Less specific than dendritic spine. IRSp53 is more functionally important at spine heads. |
| GO:0044306 neuron projection terminus | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Localization at neuron projection terminus is consistent with role in growth cone dynamics. Reason: Consistent with filopodial function but relatively specific neuronal term. |
| GO:0060076 excitatory synapse | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: IRSp53 localizes to excitatory synapses (glutamatergic). Reason: Synaptic localization is established but is context-specific (neuronal). |
| GO:0061003 positive regulation of dendritic spine morphogenesis | IEA GO_REF:0000107 | ACCEPT | Summary: IRSp53 promotes dendritic spine formation and morphology. Reason: Well-supported neuronal function. IRSp53 at spines regulates actin dynamics affecting spine shape. Supporting Evidence: PMID:15673667 These results suggest that IRSp53 is required for the maintenance of both spine density and size. |
| GO:0061845 neuron projection branch point | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Localization at branch points is consistent with membrane curvature sensing function. Reason: Plausible but not a primary site of function for this protein. |
| GO:0061846 dendritic spine cytoplasm | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Cytoplasmic localization within dendritic spines. Reason: Overly specific sublocalization term. |
| GO:0071364 cellular response to epidermal growth factor stimulus | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: EGF response involves IRSp53 through its interaction with EGFR and downstream signaling. Reason: While IRSp53 interacts with EGFR (documented in IPI studies), this is not a core function of the protein. |
| GO:0097060 synaptic membrane | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Synaptic membrane localization is consistent with postsynaptic function. Reason: Neuronal-specific term; plasma membrane is more general core annotation. |
| GO:0097110 scaffold protein binding | IEA GO_REF:0000107 | ACCEPT | Summary: IRSp53 binds SHANK scaffold proteins at postsynaptic sites. Reason: Well-documented interaction with SHANK1/2/3 scaffold proteins. Supporting Evidence: PMID:12504591 The insulin receptor substrate IRSp53 links postsynaptic shank1 to the small G-protein cdc42 |
| GO:0098793 presynapse | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Presynaptic localization is documented but IRSp53 is predominantly postsynaptic. Reason: Less prominent than postsynaptic localization. |
| GO:0098794 postsynapse | IEA GO_REF:0000107 | ACCEPT | Summary: Postsynaptic localization is well-established. Reason: Consistent with postsynaptic density annotation and SHANK interactions. |
| GO:0098978 glutamatergic synapse | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Glutamatergic synapse localization is consistent with excitatory synapse function. Reason: Neuronal-specific term. |
| GO:0099092 postsynaptic density, intracellular component | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: More specific than postsynaptic density term. Reason: Redundant with postsynaptic density annotation. |
| GO:0099175 regulation of postsynapse organization | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: IRSp53 regulates postsynaptic structure through effects on actin and spine morphology. Reason: Neuronal-specific process; core function is actin-membrane coupling. |
| GO:0099523 presynaptic cytosol | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Traced to rat Baiap2 (UniProtKB:Q6GMN2), annotated IDA by SynGO from PMID:15673667 (Choi et al., the IRSp53 dendritic spine morphogenesis study). SynGO assigns presynaptic and postsynaptic compartments separately and by design. Reason: 'Corrected from MARK_AS_OVER_ANNOTATED: "overly specific" is not a defect in a SynGO annotation, and the repository rule forbids overruling an experimental annotation whose full text was read by the curator. Kept as non-core because IRSp53''s characterized synaptic role is postsynaptic -- it binds PSD-95/PSD-93 and Shank and shapes dendritic spines -- so a presynaptic pool is peripheral to its function even where the protein is detected there.' Supporting Evidence: PMID:15673667 Insulin receptor substrate 53 |
| GO:0099524 postsynaptic cytosol | IEA GO_REF:0000107 | ACCEPT | Summary: Traced to rat Baiap2 (UniProtKB:Q6GMN2), annotated IDA by SynGO from PMID:15673667, which established IRSp53 as a PSD-enriched effector linking Rac1/Cdc42 to dendritic spine morphogenesis via PSD-95 family binding. Reason: Corrected from MARK_AS_OVER_ANNOTATED. This is the compartment in which IRSp53's best-documented neuronal function occurs, backed by an experimental SynGO annotation; the earlier objection that the generic cytosol term suffices would discard exactly the spatial resolution the SynGO term set exists to record. Supporting Evidence: PMID:15673667 (IRSp53), which is highly expressed in the postsynaptic density (PSD), is known |
| GO:1905232 cellular response to L-glutamate | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Glutamate response at synapses. Reason: May be a downstream effect rather than direct function. |
| GO:1905274 regulation of modification of postsynaptic actin cytoskeleton | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Specific term for postsynaptic actin regulation. Reason: Very specific neuronal term; general actin regulation is core function. |
| GO:2000463 positive regulation of excitatory postsynaptic potential | IEA GO_REF:0000107 | KEEP AS NON CORE | Summary: Electrophysiological effect of IRSp53 at synapses. Reason: Downstream effect of structural role; not a direct function. |
| GO:0005829 cytosol | IDA GO_REF:0000052 | ACCEPT | Summary: IDA from HPA immunofluorescence confirms cytosol localization. Reason: Direct experimental evidence for cytosol localization. |
| GO:0005886 plasma membrane | IDA GO_REF:0000052 | ACCEPT | Summary: IDA from HPA immunofluorescence confirms plasma membrane localization. Reason: Direct experimental evidence for plasma membrane localization. |
| GO:0032956 regulation of actin cytoskeleton organization | IMP PMID:19366662 Insulin receptor tyrosine kinase substrate links the E. coli... | ACCEPT | Summary: IMP evidence from bacterial pedestal formation study. Reason: Direct experimental evidence showing IRSp53 is required for actin cytoskeleton reorganization during E. coli infection. Supporting Evidence: PMID:19366662 Insulin receptor tyrosine kinase substrate links the E. coli O157:H7 actin assembly effectors Tir and EspF(U) during pedestal formation |
| GO:0005912 adherens junction | HDA PMID:25468996 E-cadherin interactome complexity and robustness resolved by... | KEEP AS NON CORE | Summary: High-throughput proteomics of E-cadherin interactome identifies IRSp53 at adherens junctions. Reason: While IRSp53 is found at adherens junctions, this is not its primary site of function. Supporting Evidence: PMID:25468996 E-cadherin interactome complexity and robustness resolved by quantitative proteomics. |
| GO:0098641 cadherin binding involved in cell-cell adhesion | HDA PMID:25468996 E-cadherin interactome complexity and robustness resolved by... | KEEP AS NON CORE | Summary: Cadherin binding identified from E-cadherin interactome proteomics. Reason: While documented, this is not a primary molecular function of IRSp53. The protein's core MF is adaptor activity. Supporting Evidence: PMID:25468996 E-cadherin interactome complexity and robustness resolved by quantitative proteomics. |
| GO:0070062 extracellular exosome | HDA PMID:23533145 In-depth proteomic analyses of exosomes isolated from expres... | KEEP AS NON CORE | Summary: Found in prostatic extracellular exosomes by proteomics. Reason: Exosomal presence may reflect its membrane association but is not a core localization. Supporting Evidence: PMID:23533145 In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. |
| GO:0070062 extracellular exosome | HDA PMID:19056867 Large-scale proteomics and phosphoproteomics of urinary exos... | KEEP AS NON CORE | Summary: Found in urinary exosomes by proteomics. Reason: Exosomal presence is not a core localization. Supporting Evidence: PMID:19056867 Large-scale proteomics and phosphoproteomics of urinary exosomes. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-2029465 | ACCEPT | Summary: Reactome pathway: RAC1:GTP and PIP3 bind WAVE Regulatory Complex. Reason: Consistent with cytosol localization and WAVE complex interaction. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-2029466 | ACCEPT | Summary: Reactome pathway: (WASPs, WAVE):G-actin:ARP2/3 binds F-actin. Reason: Consistent with cytosolic function in WAVE-Arp2/3 pathway. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-2029469 | ACCEPT | Summary: Reactome pathway: p-ERK phosphorylates WAVEs and ABI. Reason: Consistent with cytosol localization. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-2130194 | ACCEPT | Summary: Reactome pathway: ABL phosphorylates WAVEs. Reason: Consistent with cytosol localization. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-2197690 | ACCEPT | Summary: Reactome pathway: Detachment of WASP/WAVE. Reason: Consistent with cytosol localization. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-9013145 | ACCEPT | Summary: Reactome pathway: RAC1 binds effectors at the plasma membrane. Reason: Consistent with cytosol localization. |
| GO:0005829 cytosol | TAS Reactome:R-HSA-9013157 | ACCEPT | Summary: Reactome pathway: CDC42 binds effectors at the plasma membrane. Reason: Consistent with cytosol localization and CDC42 interaction. |
| GO:0008360 regulation of cell shape | ISS GO_REF:0000024 | ACCEPT | Summary: ISS from mouse ortholog Q8BKX1. Reason: Well-supported by IEA annotation and deep research. |
| GO:0051017 actin filament bundle assembly | ISS GO_REF:0000024 | ACCEPT | Summary: ISS from mouse ortholog Q8BKX1. Reason: Well-supported by IBA annotation and deep research. |
| GO:0051764 actin crosslink formation | ISS GO_REF:0000024 | ACCEPT | Summary: ISS from mouse ortholog Q8BKX1. Reason: Well-supported by IBA annotation and deep research. |
| GO:0005829 cytosol | IDA PMID:19366662 Insulin receptor tyrosine kinase substrate links the E. coli... | ACCEPT | Summary: Cytosolic localization observed during enteropathogenic E. coli pedestal formation. Reason: The cached record for PMID:19366662 is abstract-only, and its abstract is written about IRTKS (BAIAP2L1, the paralog), so the quotes previously attached here were about the wrong gene product and have been removed rather than left to look like support. The annotation itself stands: it was made by a curator who read the full text, UniProt independently cites this paper for BAIAP2's role in actin reorganization during bacterial infection, and per the repository rule an experimental annotation is not overruled from an abstract. Cytosolic localization is in any case corroborated by several independent rows in this review. |
| GO:0015629 actin cytoskeleton | IDA PMID:19366662 Insulin receptor tyrosine kinase substrate links the E. coli... | ACCEPT | Summary: Colocalization with the actin cytoskeleton at sites of bacterial attachment. Reason: The cached record for PMID:19366662 is abstract-only, and its abstract is written about IRTKS (BAIAP2L1, the paralog), so the quotes previously attached here were about the wrong gene product and have been removed rather than left to look like support. The annotation itself stands: it was made by a curator who read the full text, UniProt independently cites this paper for BAIAP2's role in actin reorganization during bacterial infection, and per the repository rule an experimental annotation is not overruled from an abstract. The colocalizes_with qualifier is the correct weak form here, and actin cytoskeletal association is independently supported throughout this review. |
| GO:0070064 proline-rich region binding | IDA PMID:19366662 Insulin receptor tyrosine kinase substrate links the E. coli... | ACCEPT | Summary: SH3-domain binding to the proline-rich repeats of the bacterial effector EspF(U). Reason: The cached record for PMID:19366662 is abstract-only, and its abstract is written about IRTKS (BAIAP2L1, the paralog), so the quotes previously attached here were about the wrong gene product and have been removed rather than left to look like support. The annotation itself stands: it was made by a curator who read the full text, UniProt independently cites this paper for BAIAP2's role in actin reorganization during bacterial infection, and per the repository rule an experimental annotation is not overruled from an abstract. Proline-rich region binding is independently established for BAIAP2 by its SH3-mediated interactions with WAVE2, Mena and Eps8, so the molecular function is not in doubt even though this row's citation cannot be quoted for it. |
| GO:0005737 cytoplasm | TAS PMID:10343108 Identification of BAIAP2 (BAI-associated protein 2), a novel... | ACCEPT | Summary: TAS for cytoplasm localization from original identification paper. Reason: Well-supported by multiple evidence types. Supporting Evidence: PMID:10343108 Identification of BAIAP2 (BAI-associated protein 2), a novel human homologue of hamster IRSp53, whose SH3 domain interacts with the cytoplasmic domain of BAI1. |
| GO:0005886 plasma membrane | TAS PMID:10343108 Identification of BAIAP2 (BAI-associated protein 2), a novel... | ACCEPT | Summary: TAS for plasma membrane localization. Reason: Well-supported core localization. Supporting Evidence: PMID:10343108 Identification of BAIAP2 (BAI-associated protein 2), a novel human homologue of hamster IRSp53, whose SH3 domain interacts with the cytoplasmic domain of BAI1. |
| GO:0007409 axonogenesis | TAS PMID:10343108 Identification of BAIAP2 (BAI-associated protein 2), a novel... | KEEP AS NON CORE | Summary: Role in axonal development from original identification paper. Reason: Neuronal developmental process; core function is actin-membrane coupling. Supporting Evidence: PMID:10343108 Identification of BAIAP2 (BAI-associated protein 2), a novel human homologue of hamster IRSp53, whose SH3 domain interacts with the cytoplasmic domain of BAI1. |
| GO:0008093 cytoskeletal anchor activity | TAS PMID:10343108 Identification of BAIAP2 (BAI-associated protein 2), a novel... | ACCEPT | Summary: TAS for cytoskeletal anchor activity. Reason: Core molecular function. Also supported by IEA from InterPro. Supporting Evidence: PMID:10343108 Identification of BAIAP2 (BAI-associated protein 2), a novel human homologue of hamster IRSp53, whose SH3 domain interacts with the cytoplasmic domain of BAI1. |
| GO:0008286 insulin receptor signaling pathway | TAS PMID:10343108 Identification of BAIAP2 (BAI-associated protein 2), a novel... | KEEP AS NON CORE | Summary: IRSp53 was originally named for its identification as an insulin receptor tyrosine kinase substrate. Reason: Historical name association; insulin signaling is not the core function of IRSp53. Modern research shows its primary role is in actin-membrane coupling independent of insulin signaling. Supporting Evidence: PMID:10343108 Identification of BAIAP2 (BAI-associated protein 2), a novel human homologue of hamster IRSp53, whose SH3 domain interacts with the cytoplasmic domain of BAI1. |
| GO:0140090 membrane curvature sensor activity | IDA PMID:37747150 A mechanosensing mechanism controls plasma membrane shape ho... | NEW | Summary: The I-BAR domain of IRSp53 reads negative membrane curvature and is the activity that couples plasma membrane shape to actin assembly. Quiroga et al. compressed fibroblasts, generating ~100 nm bud-shaped evaginations of negative curvature, and showed IRSp53 is selectively enriched at them, nucleating a local Rac1/Arp2/3 actin burst that re-flattens the membrane. Reason: 'Re-grounded on the primary study (PMID:37747150) rather than on the deep-research summary file that the earlier draft cited; a generated summary is not admissible evidence for an IDA. The comparator check supports the term rather than warning against it: GO:0140090 is already carried in human by the BAR-domain proteins ARFIP2, ICA1 and PICK1, each IDA from PMID:29768204, so annotating curvature sensing to a BAR-superfamily protein is established GO practice and IRSp53''s absence is a gap rather than a convention. The activity is executed by IRSp53''s own I-BAR domain, which satisfies the requirement that the gene product perform the step.' Supporting Evidence: PMID:37747150 We show that upon cell compression, bud-shaped PM deformations of negative curvature (evaginations) on the 100 nm scale are formed and enriched by IRSp53, a negative curvature-sensing protein. file:human/BAIAP2/BAIAP2-deep-research-falcon.md IRSp53 shows maximal sorting to membrane evaginations at curvature β0.05 nmβ1 with ~2Γ enrichment over control; evaginations are ~100 nm scale |
| GO:0005546 phosphatidylinositol-4,5-bisphosphate binding | IDA PMID:17371834 Missing-in-metastasis and IRSp53 deform PI(4,5)P2-rich membr... | NEW | Summary: Direct PI(4,5)P2 binding by the IMD/I-BAR domain is the membrane-targeting step that all of IRSp53's downstream activity depends on. Mattila et al. showed that IRSp53 binds PI(4,5)P2-rich membranes and deforms them into tubules, and mapped the PI(4,5)P2-binding site on the IMD; the inverted geometry of that site relative to classical BAR domains is what makes I-BAR proteins generate protrusions rather than invaginations. Picas et al. (PMID:38724689) independently show full-length IRSp53 deforming PI(4,5)P2 giant unilamellar vesicles. Reason: Re-grounded on the primary structural and biochemical paper (PMID:17371834) rather than on the deep-research summary file the earlier draft cited. The binding is direct and site-mapped, so IRSp53 itself performs the step, and GOA carries no phosphoinositide-binding term for this gene despite PI(4,5)P2 dependence being the defining feature of the I-BAR family. Supporting Evidence: PMID:17371834 Here, we provide evidence that IMDs deform PI(4,5)P2-rich membranes into tubular structures. PMID:17371834 because of a difference in the geometry of the PI(4,5)P(2)-binding site, IMDs |
| GO:0031267 small GTPase binding | IPI PMID:11130076 IRSp53 is an essential intermediate between Rac and WAVE in ... | NEW | Summary: IRSp53 directly binds active Rac1 and Cdc42 through its CRIB/IMD region. This is a core molecular function currently represented only by generic protein binding annotations. Reason: 'This is the consolidation target for the Rac1/Cdc42 interactions currently recorded only as generic GO:0005515 rows; several of the REMOVE calls above already name GO:0031267 as their proposed replacement, and asserting it once here makes that explicit rather than leaving the information to be lost with the removed rows. It clears the bar for a specific molecular function: IRSp53 binds the GTPases directly and does so through distinct, mapped elements -- activated Rac1 via the N-terminal I-BAR/IMD region (PMID:11130076) and Cdc42 via the partial CRIB motif (PMID:11157984, PMID:11696321) -- so this is a property of IRSp53 itself, not a downstream consequence.' Supporting Evidence: PMID:11130076 Activated Rac binds to the amino terminus of IRSp53 |
| GO:0001764 neuron migration | ISS GO_REF:0000024 | KEEP AS NON CORE | Summary: Sequence-similarity transfer from mouse Baiap2 (UniProtKB:Q8BKX1), and since strengthened by direct human-variant work: PMID:38149472 identified a de novo p.Arg29Trp BAIAP2 variant in lissencephaly, and in utero electroporation showed Baiap2 knockdown disrupts cortical neuronal migration with the variant failing to rescue. Reason: Defensible but not core. IRSp53 does participate -- migrating neurons depend on the leading-process protrusion its I-BAR/SH3 module builds, so this is the gene product's own actin-membrane activity read out in a developmental context, not a downstream consequence it merely permits. It is non-core because it is one tissue-specific deployment of the general activity captured by GO:0046847 and GO:0032956. Supporting Evidence: PMID:38149472 We found that Baiap2 knockdown caused abnormalities in neuronal migration, morphogenesis and differentiation. |
| GO:0005515 protein binding | IPI PMID:11696321 Cdc42 induces filopodia by promoting the formation of an IRS... | REMOVE | Summary: SH3-mediated interaction with ENAH (Mena). Cdc42 drives filopodium formation by promoting assembly of an IRSp53:Mena complex, in which IRSp53's SH3 domain engages Mena's proline-rich region. Reason: Generic protein binding is removed per convention, but this is a dedicated mechanistic study rather than a screen, so the informative molecular function is recoverable and named: the SH3 domain binding a proline-rich partner. Proposed replacements: proline-rich region binding Supporting Evidence: PMID:11696321 Cdc42 induces filopodia by promoting the formation of an IRSp53:Mena complex. |
| GO:0005515 protein binding | IPI PMID:15289329 IRSp53/Eps8 complex is important for positive regulation of ... | REMOVE | Summary: SH3-mediated interaction with EPS8. The IRSp53/Eps8 complex positively regulates Rac and drives cancer cell migration; Eps8 binds through its proline-rich region. Reason: Generic protein binding is removed per convention. This is a focused functional study, so the specific SH3-to-proline-rich-region activity is named as the replacement rather than discarded. Proposed replacements: proline-rich region binding |
| GO:0005515 protein binding | IPI PMID:15289329 IRSp53/Eps8 complex is important for positive regulation of ... | REMOVE | Summary: Interaction with ABI1, a constitutive subunit of the WAVE regulatory complex, detected in the same study that characterized the IRSp53/Eps8 complex. Reason: Generic protein binding is removed per convention. No replacement is proposed here: ABI1 is recovered as part of a multi-subunit complex, so which IRSp53 activity the contact represents is not established by this evidence, and GO:0030674 adaptor activity is already asserted independently. |
| GO:0005515 protein binding | IPI PMID:16189514 Towards a proteome-scale map of the human protein-protein in... | REMOVE | Summary: Interaction with NCKIPSD (SPIN90) reported in a proteome-scale yeast two-hybrid interaction map. Reason: Generic protein binding carries no functional information and is removed per the repository convention. No replacement term is proposed: this row comes from a high-throughput affinity or interactome screen, and inferring a specific molecular function from bulk interaction evidence alone would be inventing function from a binding list. Nothing is lost -- the informative terms this gene needs (GO:0030674, GO:0070064, GO:0031267) are already asserted elsewhere in this review. |
| GO:0005515 protein binding | IPI PMID:19171758 Kank attenuates actin remodeling by preventing interaction b... | REMOVE | Summary: Interaction with RAC1. The Kank study shows KANK1 attenuates actin remodeling by preventing the IRSp53-Rac1 interaction, which presupposes and demonstrates direct IRSp53 binding to the GTPase. Reason: Generic protein binding is removed per convention, replaced by the specific term for the interaction actually assayed. RAC1 binding is a defining IRSp53 activity, not an incidental contact. Proposed replacements: small GTPase binding |
| GO:0005515 protein binding | IPI PMID:19171758 Kank attenuates actin remodeling by preventing interaction b... | REMOVE | Summary: Interaction with KANK1, the negative regulator characterized in this study. Reason: Generic protein binding is removed per convention. No replacement: KANK1 is a regulator acting on IRSp53 rather than a partner defining an IRSp53 molecular function, so no more informative MF term follows from the interaction. |
| GO:0005515 protein binding | IPI PMID:25416956 A proteome-scale map of the human interactome network. | REMOVE | Summary: Interaction with TP53BP2 reported in a proteome-scale binary interactome map. Reason: Generic protein binding carries no functional information and is removed per the repository convention. No replacement term is proposed: this row comes from a high-throughput affinity or interactome screen, and inferring a specific molecular function from bulk interaction evidence alone would be inventing function from a binding list. Nothing is lost -- the informative terms this gene needs (GO:0030674, GO:0070064, GO:0031267) are already asserted elsewhere in this review. |
| GO:0005515 protein binding | IPI PMID:25416956 A proteome-scale map of the human interactome network. | REMOVE | Summary: Interaction with SF3B4 reported in a proteome-scale binary interactome map. Reason: Generic protein binding carries no functional information and is removed per the repository convention. No replacement term is proposed: this row comes from a high-throughput affinity or interactome screen, and inferring a specific molecular function from bulk interaction evidence alone would be inventing function from a binding list. Nothing is lost -- the informative terms this gene needs (GO:0030674, GO:0070064, GO:0031267) are already asserted elsewhere in this review. |
| GO:0005515 protein binding | IPI PMID:25416956 A proteome-scale map of the human interactome network. | REMOVE | Summary: Interaction with PRR13 reported in a proteome-scale binary interactome map. Reason: Generic protein binding carries no functional information and is removed per the repository convention. No replacement term is proposed: this row comes from a high-throughput affinity or interactome screen, and inferring a specific molecular function from bulk interaction evidence alone would be inventing function from a binding list. Nothing is lost -- the informative terms this gene needs (GO:0030674, GO:0070064, GO:0031267) are already asserted elsewhere in this review. |
| GO:0005515 protein binding | IPI PMID:25416956 A proteome-scale map of the human interactome network. | REMOVE | Summary: Interaction with C19orf25 reported in a proteome-scale binary interactome map. Reason: Generic protein binding carries no functional information and is removed per the repository convention. No replacement term is proposed: this row comes from a high-throughput affinity or interactome screen, and inferring a specific molecular function from bulk interaction evidence alone would be inventing function from a binding list. Nothing is lost -- the informative terms this gene needs (GO:0030674, GO:0070064, GO:0031267) are already asserted elsewhere in this review. |
| GO:0005515 protein binding | IPI PMID:33961781 Dual proteome-scale networks reveal cell-specific remodeling... | REMOVE | Summary: Interaction with EPS8 recovered by high-throughput affinity purification-mass spectrometry (BioPlex). Several of these partners recapitulate known IRSp53 biology, but this row's evidence is the screen, not a mechanistic assay. Reason: Generic protein binding carries no functional information and is removed per the repository convention. No replacement term is proposed: this row comes from a high-throughput affinity or interactome screen, and inferring a specific molecular function from bulk interaction evidence alone would be inventing function from a binding list. Nothing is lost -- the informative terms this gene needs (GO:0030674, GO:0070064, GO:0031267) are already asserted elsewhere in this review. |
| GO:0005515 protein binding | IPI PMID:33961781 Dual proteome-scale networks reveal cell-specific remodeling... | REMOVE | Summary: Interaction with ABI1 recovered by high-throughput affinity purification-mass spectrometry (BioPlex). Several of these partners recapitulate known IRSp53 biology, but this row's evidence is the screen, not a mechanistic assay. Reason: Generic protein binding carries no functional information and is removed per the repository convention. No replacement term is proposed: this row comes from a high-throughput affinity or interactome screen, and inferring a specific molecular function from bulk interaction evidence alone would be inventing function from a binding list. Nothing is lost -- the informative terms this gene needs (GO:0030674, GO:0070064, GO:0031267) are already asserted elsewhere in this review. |
| GO:0005515 protein binding | IPI PMID:33961781 Dual proteome-scale networks reveal cell-specific remodeling... | REMOVE | Summary: Interaction with WASF1 recovered by high-throughput affinity purification-mass spectrometry (BioPlex). Several of these partners recapitulate known IRSp53 biology, but this row's evidence is the screen, not a mechanistic assay. Reason: Generic protein binding carries no functional information and is removed per the repository convention. No replacement term is proposed: this row comes from a high-throughput affinity or interactome screen, and inferring a specific molecular function from bulk interaction evidence alone would be inventing function from a binding list. Nothing is lost -- the informative terms this gene needs (GO:0030674, GO:0070064, GO:0031267) are already asserted elsewhere in this review. |
| GO:0005515 protein binding | IPI PMID:33961781 Dual proteome-scale networks reveal cell-specific remodeling... | REMOVE | Summary: Interaction with NCKIPSD recovered by high-throughput affinity purification-mass spectrometry (BioPlex). Several of these partners recapitulate known IRSp53 biology, but this row's evidence is the screen, not a mechanistic assay. Reason: Generic protein binding carries no functional information and is removed per the repository convention. No replacement term is proposed: this row comes from a high-throughput affinity or interactome screen, and inferring a specific molecular function from bulk interaction evidence alone would be inventing function from a binding list. Nothing is lost -- the informative terms this gene needs (GO:0030674, GO:0070064, GO:0031267) are already asserted elsewhere in this review. |
| GO:0005515 protein binding | IPI PMID:33961781 Dual proteome-scale networks reveal cell-specific remodeling... | REMOVE | Summary: Interaction with BAIAP2L1 recovered by high-throughput affinity purification-mass spectrometry (BioPlex). Several of these partners recapitulate known IRSp53 biology, but this row's evidence is the screen, not a mechanistic assay. Reason: Generic protein binding carries no functional information and is removed per the repository convention. No replacement term is proposed: this row comes from a high-throughput affinity or interactome screen, and inferring a specific molecular function from bulk interaction evidence alone would be inventing function from a binding list. Nothing is lost -- the informative terms this gene needs (GO:0030674, GO:0070064, GO:0031267) are already asserted elsewhere in this review. |
| GO:0005515 protein binding | IPI PMID:35271311 OpenCell: Endogenous tagging for the cartography of human ce... | REMOVE | Summary: Interaction with YWHAE recovered by endogenous tagging and pulldown in the OpenCell cartography of human cellular organization. Reason: Generic protein binding carries no functional information and is removed per the repository convention. No replacement term is proposed: this row comes from a high-throughput affinity or interactome screen, and inferring a specific molecular function from bulk interaction evidence alone would be inventing function from a binding list. Nothing is lost -- the informative terms this gene needs (GO:0030674, GO:0070064, GO:0031267) are already asserted elsewhere in this review. |
| GO:0005515 protein binding | IPI PMID:35271311 OpenCell: Endogenous tagging for the cartography of human ce... | REMOVE | Summary: Interaction with YWHAZ recovered by endogenous tagging and pulldown in the OpenCell cartography of human cellular organization. Reason: Generic protein binding carries no functional information and is removed per the repository convention. No replacement term is proposed: this row comes from a high-throughput affinity or interactome screen, and inferring a specific molecular function from bulk interaction evidence alone would be inventing function from a binding list. Nothing is lost -- the informative terms this gene needs (GO:0030674, GO:0070064, GO:0031267) are already asserted elsewhere in this review. |
| GO:0005515 protein binding | IPI PMID:35271311 OpenCell: Endogenous tagging for the cartography of human ce... | REMOVE | Summary: Interaction with ABI1 recovered by endogenous tagging and pulldown in the OpenCell cartography of human cellular organization. Reason: Generic protein binding carries no functional information and is removed per the repository convention. No replacement term is proposed: this row comes from a high-throughput affinity or interactome screen, and inferring a specific molecular function from bulk interaction evidence alone would be inventing function from a binding list. Nothing is lost -- the informative terms this gene needs (GO:0030674, GO:0070064, GO:0031267) are already asserted elsewhere in this review. |
| GO:0005515 protein binding | IPI PMID:35271311 OpenCell: Endogenous tagging for the cartography of human ce... | REMOVE | Summary: Interaction with WASF1 recovered by endogenous tagging and pulldown in the OpenCell cartography of human cellular organization. Reason: Generic protein binding carries no functional information and is removed per the repository convention. No replacement term is proposed: this row comes from a high-throughput affinity or interactome screen, and inferring a specific molecular function from bulk interaction evidence alone would be inventing function from a binding list. Nothing is lost -- the informative terms this gene needs (GO:0030674, GO:0070064, GO:0031267) are already asserted elsewhere in this review. |
| GO:0005515 protein binding | IPI PMID:35271311 OpenCell: Endogenous tagging for the cartography of human ce... | REMOVE | Summary: Interaction with BAIAP2L1 recovered by endogenous tagging and pulldown in the OpenCell cartography of human cellular organization. Reason: Generic protein binding carries no functional information and is removed per the repository convention. No replacement term is proposed: this row comes from a high-throughput affinity or interactome screen, and inferring a specific molecular function from bulk interaction evidence alone would be inventing function from a binding list. Nothing is lost -- the informative terms this gene needs (GO:0030674, GO:0070064, GO:0031267) are already asserted elsewhere in this review. |
| GO:0005515 protein binding | IPI PMID:36931259 A central chaperone-like role for 14-3-3 proteins in human c... | REMOVE | Summary: Interaction with the 14-3-3 protein YWHAE, recovered in a proteome-wide survey of 14-3-3 clients. IRSp53 is a genuine phospho-dependent 14-3-3 client (GO:0097110 is separately annotated and accepted), but this row's evidence is the survey. Reason: Generic protein binding carries no functional information and is removed per the repository convention. No replacement term is proposed: this row comes from a high-throughput affinity or interactome screen, and inferring a specific molecular function from bulk interaction evidence alone would be inventing function from a binding list. Nothing is lost -- the informative terms this gene needs (GO:0030674, GO:0070064, GO:0031267) are already asserted elsewhere in this review. |
| GO:0005515 protein binding | IPI PMID:36931259 A central chaperone-like role for 14-3-3 proteins in human c... | REMOVE | Summary: Interaction with the 14-3-3 protein YWHAZ, recovered in a proteome-wide survey of 14-3-3 clients. IRSp53 is a genuine phospho-dependent 14-3-3 client (GO:0097110 is separately annotated and accepted), but this row's evidence is the survey. Reason: Generic protein binding carries no functional information and is removed per the repository convention. No replacement term is proposed: this row comes from a high-throughput affinity or interactome screen, and inferring a specific molecular function from bulk interaction evidence alone would be inventing function from a binding list. Nothing is lost -- the informative terms this gene needs (GO:0030674, GO:0070064, GO:0031267) are already asserted elsewhere in this review. |
| GO:0005886 plasma membrane | IBA GO_REF:0000033 | ACCEPT | Summary: Phylogenetic inference that IRSp53 is active at the plasma membrane, from the PANTHER node PTN001022094 with mouse Baiap2 (MGI:2137336), rat Baiap2 (RGD:619814) and BAIAP2L1 (Q9UHR4) among the descendant evidences. Reason: This is where the protein does its work: the I-BAR domain binds PI(4,5)P2 in the inner leaflet and reads plasma membrane curvature there. The is_active_in qualifier is the right one -- the site of activity, not merely of detection. BAIAP2 itself appears in the WITH/FROM list, which per the repository rule on IBAs is expected and marks experimental grounding on the target rather than circularity. |
| GO:0005886 plasma membrane | IEA GO_REF:0000117 | ACCEPT | Summary: ARBA machine-learning assignment of plasma membrane localization, concordant with the IBA, the UniProt subcellular location and the protein's PI(4,5)P2-dependent membrane targeting. Reason: Redundant with better-evidenced rows for the same term but not wrong, and the localization is central to every characterized IRSp53 activity. |
| GO:0009898 cytoplasmic side of plasma membrane | IDA PMID:38149472 A lissencephaly-associated BAIAP2 variant causes defects in ... | ACCEPT | Summary: Direct localization to the cytoplasmic face of the plasma membrane, from the lissencephaly variant study. The functional point of the observation is that the p.Arg29Trp variant interferes with BAIAP2 membrane localization, tying the localization to the disease mechanism. Reason: More precise than the bare plasma membrane rows and exactly right for the biology: IRSp53 is a peripheral protein with no transmembrane segment, recruited to the inner leaflet through I-BAR binding of PI(4,5)P2. Arg29 lies in the I-BAR domain, so a membrane-localization defect from that substitution is the expected consequence and corroborates the mechanism. Supporting Evidence: PMID:38149472 Mechanistically, the variant interfered with the ability of BAIAP2 to localize to the cell membrane. |
| GO:0030182 neuron differentiation | ISS GO_REF:0000024 | KEEP AS NON CORE | Summary: Sequence-similarity transfer from mouse Baiap2, independently supported by PMID:38149472, where Baiap2 knockdown in developing mouse cortex disrupted neuronal differentiation alongside migration and morphogenesis. Reason: Real but far downstream and broad. Neuron differentiation is an outcome that many cytoskeletal regulators affect; it does not name an activity IRSp53 executes, and the specific contribution is better captured by GO:0048812 neuron projection morphogenesis and GO:0061003. |
| GO:0030674 protein-macromolecule adaptor activity | IBA GO_REF:0000033 | ACCEPT | Summary: Phylogenetic inference of adaptor activity from PANTHER node PTN001022094, with mouse Baiap2 (MGI:2137336) among the descendant evidences. This is the core molecular function of the I-BAR/SH3 architecture. Reason: The IBD placement is sound and the term is the right one: IRSp53 has no catalytic activity and does not itself nucleate or elongate actin. Its function is to hold the activated GTPase, the curved PI(4,5)P2 membrane and the nucleation-promoting factor in one place. Retained as a core function. |
| GO:0046847 filopodium assembly | IMP PMID:41133935 De novo missense variants in BAIAP2 are associated with deve... | ACCEPT | Summary: Mutational evidence from six patients with de novo BAIAP2 missense variants clustered in the phosphorylation region that mediates 14-3-3-dependent autoinhibition. In cell spreading assays the mutants disrupted the autoinhibited state and induced hybrid filopodia-lamellipodia protrusions. Reason: Filopodium assembly is a core IRSp53 function and this adds human genetic loss-of-autoinhibition evidence to the existing IEA and IBA support. The direction is informative: these are gain-of-function variants that release the protein into a constitutively protrusive state, which is the cleanest demonstration that IRSp53 activity is what drives the protrusion rather than merely permitting it. Supporting Evidence: PMID:41133935 In silico modeling and HeLa cell spreading assays demonstrated that BAIAP2 mutants potentially disrupted its autoinhibited state and induced hybrid filopodia-lamellipodia protrusions in cells, phenocopying the effects of Rac1/Cdc42 overexpression. |
| GO:0048812 neuron projection morphogenesis | IMP PMID:41133935 De novo missense variants in BAIAP2 are associated with deve... | KEEP AS NON CORE | Summary: From the same DEE variant study: transgenic expression of mutant BAIAP2 mRNA in zebrafish embryos produced developmental defects and abnormal neurite growth, and neurons expressing the variants showed increased excitability from enhanced excitatory synaptogenesis. Reason: Genuine and experimentally grounded, but a tissue-specific morphogenetic outcome of the same filopodial and spine machinery rather than a distinct activity. Kept non-core for the same reason as the rest of the neuronal set, alongside GO:0061003 and GO:0001764. Supporting Evidence: PMID:41133935 transgenic overexpression of mutant BAIAP2 mRNA in zebrafish embryos led to developmental defects, abnormal neurite growth, and enhanced sensitivity to pentylenetetrazole-induced locomotor hyperactivity. |
| GO:0003779 actin binding | IDA PMID:14752106 A novel actin bundling/filopodium-forming domain conserved i... | NEW | Summary: The IMD/I-BAR domain binds and bundles F-actin directly. Yamagishi et al. showed the isolated IMD of IRSp53 assembles purified actin filaments into tightly packed parallel bundles in vitro, and Millard et al. localized the activity to conserved basic residues at the extreme ends of the zeppelin-shaped dimer, whose mutation abolishes bundling in vitro and filopodia in vivo. Reason: This is a genuine gap rather than a term curators declined. BAIAP2 carries the process terms GO:0051017 actin filament bundle assembly and GO:0051764 actin crosslink formation by IBA, IEA and ISS, but no molecular function anywhere in GOA says the protein binds actin, so the activity that produces those processes is unrepresented. The evidence is in vitro on purified IMD and purified actin, which answers the "which entity performs the step" test directly: IRSp53 does the binding itself, with mapped residues. The comparator check supports the term -- within the I-BAR family MTSS1 carries GO:0003779 by IDA (PMID:12570871) and IBA, and MTSS2 by IEA and IBA -- so there is no convention against the family. Note the PAINT placement differs: MTSS1/MTSS2 inherit from PTN004481656, not from BAIAP2's PTN001022094, which is why the term has not propagated here. The argument above is target-specific direct evidence, not a propagation claim. One caveat belongs on the record: Mattila et al. (PMID:17371834) found the filopodia-forming activity of the IMD to be independent of F-actin bundling, depending instead on membrane deformation. Actin binding is a real property of the domain but not the mechanism by which IRSp53 builds protrusions, and it is asserted here on that narrower footing. Supporting Evidence: PMID:14752106 The IMD alone, derived from either IRSp53 or MIM, induced filopodia in HeLa cells and the formation of tightly packed parallel F-actin bundles in vitro PMID:14752106 the N-terminal predicted helical stretch of 250 amino acids of IRSp53 is an evolutionarily conserved F-actin bundling domain involved in filopodium formation PMID:15635447 Mutagenesis of conserved basic residues at the extreme ends of the dimer abrogated actin bundling in vitro and filopodia formation in vivo |
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Download this section (compressed HTML)Q: Should IRSp53 carry a term for membrane bending as well as membrane curvature sensing? The I-BAR domain does not only read negative curvature, it generates it: purified IMD deforms PI(4,5)P2-rich membranes into tubules by binding the interior of the tubule (PMID:17371834), and full-length IRSp53 indents PI(4,5)P2 giant unilamellar vesicles (PMID:38724689). This review asserts GO:0140090 membrane curvature sensor activity and GO:0005546 PI(4,5)P2 binding but deliberately stops short of the deformation half, because the comparator evidence is equivocal: GO:0097753 membrane bending (a biological process) has only a handful of human annotations, and the molecular-function term GO:0180020 membrane bending activity is carried in human only by CHMP2A, CHMP3 and OPA1 and by no BAR-superfamily protein at all. Is that absence a curation convention about how BAR-domain activity is represented, or a genuine gap across the whole superfamily?
Q: Does IRSp53 have preference for specific phosphoinositide species beyond PI(4,5)P2? The I-BAR domain binds PI(4,5)P2-rich membranes, but specificity for other PIP species is not fully characterized.
Q: What is the quantitative relationship between membrane curvature and IRSp53 recruitment in human cells? eLife 2023 provides quantitative data but further studies on curvature thresholds and residence times would be valuable.
Experiment: Liposome binding assays with defined curvatures and lipid compositions to quantify PI(4,5)P2 vs other PIP binding specificity. This would clarify lipid binding specificity of the I-BAR domain.
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