id: Q86Y37
gene_symbol: CACUL1
product_type: PROTEIN
status: COMPLETE
taxon:
  id: NCBITaxon:9606
  label: Homo sapiens
description: >-
  CACUL1 (CDK2-associated and cullin domain-containing protein 1; also known as
  CAC1 / C10orf46) is a poorly characterized 369-amino-acid human protein
  containing a single cullin-repeat-like domain with disordered N- and C-terminal
  regions. Despite its name and cullin-fold homology, it is much shorter than
  canonical cullins (~750-900 aa) and there is no experimental evidence that it
  nucleates a functional cullin-RING ubiquitin ligase or carries a neddylation/RBX
  module. The best-supported activity, from a single study, is physical association
  with the cyclin-dependent kinase CDK2 and promotion of CDK2 kinase activity,
  consistent with a role in G1/S cell-cycle progression and proliferation; the
  protein is highly expressed in cancer tissues and cell lines, and its abundance
  varies across the cell cycle. CACUL1 also acts as a nuclear-receptor
  transcriptional corepressor: it is a SIRT1-interacting protein that binds
  PPARgamma (and estrogen receptor alpha) and represses their transcription by
  coordinating SIRT1 and the histone demethylase LSD1/KDM1A at target promoters
  (lowering H3K9 acetylation and raising H3K9 methylation), thereby suppressing
  adipocyte differentiation. Separately, although CACUL1 does not itself nucleate a
  cullin-RING ligase, it binds the Cul3-Keap1-Rbx1 (CRL3-Keap1) ubiquitin-ligase
  complex and attenuates its ubiquitination of the transcription factor Nrf2
  (NFE2L2), stabilizing Nrf2 and promoting the antioxidant response. CACUL1 has
  also been recovered as a yeast two-hybrid interactor of ARMC5. Overall, CACUL1 is
  a multifunctional protein linking CDK2-associated cell-cycle progression,
  nuclear-receptor corepression, and negative regulation of Nrf2 ubiquitination.
alternative_products:
- name: '1'
  id: Q86Y37-1
- name: '2'
  id: Q86Y37-2
  sequence_note: VSP_013936, VSP_013937
- name: '4'
  id: Q86Y37-4
  sequence_note: VSP_013933
existing_annotations:
- term:
    id: GO:0000082
    label: G1/S transition of mitotic cell cycle
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  qualifier: involved_in
  review:
    summary: >-
      Phylogenetic (IBA) transfer of a G1/S cell-cycle role. This is consistent
      with the direct experimental evidence in the same gene (PMID:19829063),
      where CACUL1/CAC1 knockdown induces G1/S arrest. Retained but as a
      non-core/secondary process annotation since the defining molecular activity
      is the CDK2 interaction rather than the broader cell-cycle process itself.
    action: KEEP_AS_NON_CORE
    reason: >-
      Supported indirectly by direct knockdown evidence (PMID:19829063) that
      CACUL1 loss causes G1/S arrest, but this is a downstream process rather than
      a precise molecular function; treat as a non-core involvement.
    supported_by:
    - reference_id: PMID:19829063
      supporting_text: >-
        Knockdown of CAC1 by RNAi inhibits cell proliferation and induces G(1)/S
        arrest.
- term:
    id: GO:0019901
    label: protein kinase binding
  evidence_type: IBA
  original_reference_id: GO_REF:0000033
  qualifier: enables
  review:
    summary: >-
      Phylogenetic (IBA) transfer of protein kinase binding. This is the same
      molecular function directly demonstrated for CACUL1 via its physical
      interaction with CDK2 (PMID:19829063). Accept as it reflects the
      best-supported molecular activity of the protein.
    action: ACCEPT
    reason: >-
      Directly corroborated by experimental CDK2 binding (PMID:19829063); the
      IBA call coincides with the strongest molecular evidence for this protein.
    supported_by:
    - reference_id: PMID:19829063
      supporting_text: this protein is physically associated with CDK2
- term:
    id: GO:0006511
    label: ubiquitin-dependent protein catabolic process
  evidence_type: IEA
  original_reference_id: GO_REF:0000002
  qualifier: involved_in
  review:
    summary: >-
      The IEA InterPro2GO transfer (cullin-repeat domain IPR001373) implies direct
      participation in ubiquitin-dependent catabolism, which remains unsupported:
      CACUL1 is too short to be a CRL scaffold and carries no RBX/neddylation
      module. However, Kigoshi et al. 2015 (PMID:26238671) show CACUL1 binds the
      Cul3-Keap1-Rbx1 ubiquitin-ligase complex and ATTENUATES Nrf2 ubiquitination,
      stabilizing Nrf2. The experimentally supported role is therefore NEGATIVE
      regulation of (Nrf2) ubiquitination, not direct participation in catabolism;
      modify accordingly.
    action: MODIFY
    reason: >-
      Direct participation in ubiquitin-dependent catabolism is a domain-only
      over-annotation, but CACUL1 has experimentally demonstrated activity as a
      negative regulator of Nrf2 ubiquitination via the Cul3-Keap1-Rbx1 complex
      (PMID:26238671); replace with negative regulation of protein ubiquitination.
    proposed_replacement_terms:
    - id: GO:0031397
      label: negative regulation of protein ubiquitination
    supported_by:
    - reference_id: PMID:26238671
      supporting_text: CACUL1 attenuates Nrf2 ubiquitination
    - reference_id: PMID:26238671
      supporting_text: CACUL1 stabilizes Nrf2 by regulating Nrf2 ubiquitination
- term:
    id: GO:0031625
    label: ubiquitin protein ligase binding
  evidence_type: IEA
  original_reference_id: GO_REF:0000002
  qualifier: enables
  review:
    summary: >-
      Although the IEA call was originally a pure cullin-domain (IPR001373)
      transfer, it is now experimentally supported: Kigoshi et al. 2015
      (PMID:26238671) demonstrate that CACUL1 binds Keap1, Cul3 and Rbx1 - the
      components of the ubiquitin ligase (CRL3) responsible for Nrf2 ubiquitination
      - and thereby modulates that ligase's activity toward Nrf2. The
      ubiquitin-protein-ligase-binding molecular function is therefore retained
      with direct experimental support.
    action: ACCEPT
    reason: >-
      Experimentally demonstrated binding to the Cul3-Keap1-Rbx1 ubiquitin ligase
      complex (PMID:26238671) directly supports this molecular function; it is no
      longer a domain-only over-annotation.
    supported_by:
    - reference_id: PMID:26238671
      supporting_text: >-
        we further assessed CACUL1 binding with Keap1, Cul3 and Rbx1, the
        components of the Ubiquitin ligase responsible for Nrf2 ubiquitination.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:23178685
  qualifier: enables
  review:
    summary: >-
      This IPI annotation (WITH ESR1/P03372) records the physical interaction
      between CACUL1/CAC1 and estrogen receptor alpha (ERalpha), corroborated by
      IntAct (NbExp=5). The bare "protein binding" term is uninformative; a more
      specific molecular function is warranted given the established, directional
      ERalpha interaction.
    action: MODIFY
    reason: >-
      The interaction partner is a specific nuclear receptor (ERalpha); replace
      the uninformative protein binding term with nuclear estrogen receptor
      binding to capture the actual molecular function.
    proposed_replacement_terms:
    - id: GO:0030331
      label: nuclear estrogen receptor binding
    supported_by:
    - reference_id: PMID:23178685
      supporting_text: >-
        The CoRNR box of CAC1 was required for the binding to and inactivation
        of ERα.
- term:
    id: GO:0005515
    label: protein binding
  evidence_type: IPI
  original_reference_id: PMID:28169274
  qualifier: enables
  review:
    summary: >-
      This IPI annotation (WITH ARMC5/Q96C12) derives from a yeast two-hybrid
      screen in which CACUL1 was one of 16 ARMC5-binding partners. The paper
      characterizes ARMC5, not CACUL1, and provides no functional context for
      CACUL1. The bare "protein binding" term is uninformative and rests on a
      single high-throughput Y2H datum.
    action: MARK_AS_OVER_ANNOTATED
    reason: >-
      Uninformative bare protein binding from a single Y2H hit in an ARMC5-focused
      study; no specific function or biology for CACUL1 is established.
    supported_by:
    - reference_id: PMID:28169274
      supporting_text: Yeast 2-hybrid assays identify 16 ARMC5-binding partners.
- term:
    id: GO:0000082
    label: G1/S transition of mitotic cell cycle
  evidence_type: IMP
  original_reference_id: PMID:19829063
  qualifier: involved_in
  review:
    summary: >-
      Direct experimental evidence: RNAi knockdown of CACUL1/CAC1 induces G1/S
      arrest, indicating involvement in the G1/S transition. This is a genuine
      process annotation but downstream of the protein's molecular role in
      activating CDK2; retained as a non-core involvement.
    action: KEEP_AS_NON_CORE
    reason: >-
      Well-supported by knockdown phenotype, but the broad cell-cycle process is
      secondary to the precise CDK2-activating molecular function.
    supported_by:
    - reference_id: PMID:19829063
      supporting_text: >-
        Knockdown of CAC1 by RNAi inhibits cell proliferation and induces G(1)/S
        arrest.
- term:
    id: GO:0008284
    label: positive regulation of cell population proliferation
  evidence_type: IMP
  original_reference_id: PMID:19829063
  qualifier: involved_in
  review:
    summary: >-
      Direct experimental evidence: CACUL1/CAC1 knockdown inhibits cell
      proliferation, supporting a positive role in proliferation. This is a real
      but downstream phenotypic process annotation; kept as non-core relative to
      the underlying CDK2-activating molecular function.
    action: KEEP_AS_NON_CORE
    reason: >-
      Supported by knockdown phenotype but is a broad downstream process rather
      than the precise molecular activity.
    supported_by:
    - reference_id: PMID:19829063
      supporting_text: >-
        Knockdown of CAC1 by RNAi inhibits cell proliferation and induces G(1)/S
        arrest.
- term:
    id: GO:0019901
    label: protein kinase binding
  evidence_type: IPI
  original_reference_id: PMID:19829063
  qualifier: enables
  review:
    summary: >-
      Direct experimental evidence (IPI, WITH CDK2/P24941) for physical
      association of CACUL1/CAC1 with the cyclin-dependent kinase CDK2. This is
      the best-supported molecular function of the protein and represents a core
      activity.
    action: ACCEPT
    reason: >-
      Directly demonstrated CDK2 binding; an informative molecular-function term
      reflecting the protein's defining characterized interaction.
    supported_by:
    - reference_id: PMID:19829063
      supporting_text: this protein is physically associated with CDK2
- term:
    id: GO:0045860
    label: positive regulation of protein kinase activity
  evidence_type: IMP
  original_reference_id: PMID:19829063
  qualifier: involved_in
  review:
    summary: >-
      Direct experimental evidence that CACUL1/CAC1 promotes CDK2 kinase
      activity. This captures the functional consequence of the CDK2 interaction
      and is a core aspect of the protein's characterized activity, though the
      molecular mechanism of activation remains undefined.
    action: ACCEPT
    reason: >-
      Supported by experiments showing CAC1 promotes CDK2 kinase activity; a
      well-evidenced functional annotation.
    supported_by:
    - reference_id: PMID:19829063
      supporting_text: >-
        CAC1 interacts with CDK2 and promotes the kinase activity of CDK2 protein
- term:
    id: GO:0003714
    label: transcription corepressor activity
  evidence_type: IDA
  original_reference_id: PMID:29233982
  qualifier: enables
  review:
    summary: >-
      Proposed NEW molecular-function annotation (not in current GOA). CACUL1
      represses PPARgamma- (PMID:29233982) and ERalpha- (PMID:23178685) dependent
      transcription by coordinating SIRT1 and LSD1 at target promoters, i.e. it
      acts as a nuclear-receptor transcription corepressor. This is the
      informative MF underlying the existing bare protein-binding / nuclear
      estrogen receptor binding annotations.
    action: NEW
    reason: >-
      Two independent studies show CACUL1 physically binds nuclear receptors
      (PPARgamma, ERalpha) and represses their transcriptional activity via
      SIRT1/LSD1; transcription corepressor activity captures this MF.
    supported_by:
    - reference_id: PMID:29233982
      supporting_text: >-
        CACUL1, identified as a novel SIRT1 interacting protein, physically
        interacts with PPARγ and represses its transcriptional activity,
        suppressing adipocyte differentiation
    - reference_id: PMID:23178685
      supporting_text: CAC1, associated with LSD1, functions as an ERα corepressor
- term:
    id: GO:0042975
    label: peroxisome proliferator activated receptor binding
  evidence_type: IPI
  original_reference_id: PMID:29233982
  qualifier: enables
  review:
    summary: >-
      Proposed NEW molecular-function annotation (not in current GOA). CACUL1
      physically interacts with PPARgamma, providing the receptor-binding basis
      for its corepressor activity at PPARgamma-responsive promoters.
    action: NEW
    reason: >-
      Direct physical interaction of CACUL1 with PPARgamma demonstrated
      (PMID:29233982); a specific, informative nuclear-receptor-binding MF.
    supported_by:
    - reference_id: PMID:29233982
      supporting_text: >-
        CACUL1, identified as a novel SIRT1 interacting protein, physically
        interacts with PPARγ and represses its transcriptional activity,
        suppressing adipocyte differentiation
- term:
    id: GO:0031397
    label: negative regulation of protein ubiquitination
  evidence_type: IMP
  original_reference_id: PMID:26238671
  qualifier: involved_in
  review:
    summary: >-
      Proposed NEW process annotation (not in current GOA), also offered as the
      MODIFY replacement for the domain-only GO:0006511 IEA. CACUL1 binds the
      Cul3-Keap1-Rbx1 complex and attenuates Nrf2 ubiquitination, stabilizing
      Nrf2 - a negative regulatory role in protein ubiquitination.
    action: NEW
    reason: >-
      Experimentally demonstrated attenuation of Nrf2 ubiquitination by CACUL1
      (PMID:26238671) supports negative regulation of protein ubiquitination.
    supported_by:
    - reference_id: PMID:26238671
      supporting_text: CACUL1 attenuates Nrf2 ubiquitination
    - reference_id: PMID:26238671
      supporting_text: CACUL1 stabilizes Nrf2 by regulating Nrf2 ubiquitination
    - reference_id: file:human/CACUL1/CACUL1-deep-research-falcon.md
      supporting_text: >-
        CACUL1 associates with the Cul3-Keap1-Rbx1 ubiquitin ligase complex
- term:
    id: GO:0050821
    label: protein stabilization
  evidence_type: IMP
  original_reference_id: PMID:26238671
  qualifier: involved_in
  review:
    summary: >-
      Proposed NEW process annotation (not in current GOA). By attenuating its
      ubiquitination, CACUL1 stabilizes the transcription factor Nrf2 (half-life
      ~10 -> ~30 min), the downstream consequence of its CRL3-Keap1 modulation.
    action: NEW
    reason: >-
      CACUL1 lengthens Nrf2 half-life by limiting its ubiquitination
      (PMID:26238671), consistent with a protein-stabilization role.
    supported_by:
    - reference_id: PMID:26238671
      supporting_text: CACUL1 stabilizes Nrf2 by regulating Nrf2 ubiquitination
core_functions:
- description: >-
    Binds the cyclin-dependent kinase CDK2 and promotes its kinase activity,
    contributing to G1/S cell-cycle progression and cell proliferation. This is
    the best-characterized activity but rests on a single study and the molecular
    mechanism of CDK2 activation is undefined.
  molecular_function:
    id: GO:0019901
    label: protein kinase binding
  directly_involved_in:
  - id: GO:0045860
    label: positive regulation of protein kinase activity
  - id: GO:0000082
    label: G1/S transition of mitotic cell cycle
  supported_by:
  - reference_id: PMID:19829063
    supporting_text: >-
      CAC1 interacts with CDK2 and promotes the kinase activity of CDK2 protein
  - reference_id: PMID:19829063
    supporting_text: this protein is physically associated with CDK2
- description: >-
    Acts as a context-dependent nuclear-receptor co-regulator: binds estrogen
    receptor alpha (ERalpha) via its CoRNR box and, in association with the
    histone demethylase LSD1/KDM1A, can repress ERalpha-dependent transcription.
    This is a secondary, less-established function reported by a single study.
  molecular_function:
    id: GO:0030331
    label: nuclear estrogen receptor binding
  supported_by:
  - reference_id: PMID:23178685
    supporting_text: >-
      The CoRNR box of CAC1 was required for the binding to and inactivation of
      ERα.
  - reference_id: PMID:23178685
    supporting_text: CAC1, associated with LSD1, functions as an ERα corepressor
- description: >-
    Functions as a nuclear-receptor transcriptional corepressor. CACUL1 is a
    SIRT1-interacting protein that also physically binds PPARgamma (and estrogen
    receptor alpha) and represses their transcriptional activity by reciprocally
    coordinating the histone deacetylase SIRT1 and the demethylase LSD1/KDM1A at
    target promoters, lowering H3K9 acetylation and raising H3K9 methylation; for
    PPARgamma this suppresses adipocyte differentiation.
  molecular_function:
    id: GO:0003714
    label: transcription corepressor activity
  supported_by:
  - reference_id: PMID:29233982
    supporting_text: >-
      CACUL1, identified as a novel SIRT1 interacting protein, physically
      interacts with PPARγ and represses its transcriptional activity,
      suppressing adipocyte differentiation
  - reference_id: PMID:29233982
    supporting_text: >-
      CACUL1 functionally associates with SIRT1 and LSD1 at the PPARγ-responsive
      gene promoter, and regulates the level of histone H3K9 acetylation and
      methylation to repress PPARγ during adipocyte differentiation
  - reference_id: PMID:23178685
    supporting_text: CAC1, associated with LSD1, functions as an ERα corepressor
- description: >-
    Negatively regulates protein ubiquitination by binding the Cul3-Keap1-Rbx1
    (CRL3-Keap1) ubiquitin-ligase complex and attenuating its ubiquitination of
    the transcription factor Nrf2 (NFE2L2), thereby stabilizing Nrf2 and
    sensitizing cells for the antioxidant/ARE response. This couples a
    cullin-RING-ligase-binding activity to a regulatory, rather than catalytic,
    role in the ubiquitin system.
  molecular_function:
    id: GO:0031625
    label: ubiquitin protein ligase binding
  directly_involved_in:
  - id: GO:0031397
    label: negative regulation of protein ubiquitination
  - id: GO:0050821
    label: protein stabilization
  supported_by:
  - reference_id: PMID:26238671
    supporting_text: >-
      we further assessed CACUL1 binding with Keap1, Cul3 and Rbx1, the
      components of the Ubiquitin ligase responsible for Nrf2 ubiquitination.
  - reference_id: PMID:26238671
    supporting_text: CACUL1 attenuates Nrf2 ubiquitination
knowledge_gaps:
- gap_statement: >-
    The direct biochemical mechanism by which CACUL1 promotes CDK2 kinase activity
    remains unresolved: it is unclear whether CACUL1 allosterically activates CDK2,
    alters cyclin/CDK-inhibitor availability, changes substrate engagement, or acts
    through another cell-cycle regulatory complex.
  boundary: >-
    CACUL1 physically associates with CDK2, promotes CDK2 kinase activity, is
    expressed in a cell-cycle-dependent manner, and RNAi knockdown causes reduced
    proliferation with G1/S arrest. The unresolved part is the immediate molecular
    mechanism connecting CACUL1 binding to increased CDK2 activity.
  gap_kind:
  - BIOLOGY
  dark_aspect: RESIDUAL_SUBGAP
  status: OPEN
  significance: >-
    CDK2 regulation is the best-supported CACUL1 activity, but without a mechanism
    it is hard to distinguish a direct CDK2 co-regulator from an indirect cell-cycle
    phenotype.
  resolution: >-
    Reconstitute purified CACUL1-CDK2-cyclin complexes for kinase kinetics, map the
    binding interface, and test whether CACUL1 changes cyclin binding, CDK-inhibitor
    binding, or substrate phosphorylation in cells.
  provenance:
  - reference_id: PMID:19829063
    supporting_text: >-
      but how CDK2 is regulated is still incompletely understood
    reference_section_type: ABSTRACT
  - reference_id: PMID:19829063
    supporting_text: >-
      provide insight into the mechanism by which CDK2 is regulated
    reference_section_type: ABSTRACT
- gap_statement: >-
    The role of CACUL1's cullin-repeat-like domain in CRL3-Keap1/Nrf2 regulation
    is unresolved, and CACUL1 should not be curated as a bona fide cullin-RING
    scaffold unless future experiments show that it assembles or positions an E3
    ubiquitin ligase complex.
  boundary: >-
    CACUL1 binds Keap1, Cul3, and Rbx1 and attenuates Nrf2 ubiquitination, supporting
    ubiquitin-ligase binding and negative regulation of Nrf2 ubiquitination. The gap
    is whether the short cullin-like region is the binding/regulatory interface and
    whether CACUL1 modulates only CRL3-Keap1/Nrf2 or broader CRL3 substrate
    ubiquitination.
  gap_kind:
  - BIOLOGY
  - CURATION
  dark_aspect: RESIDUAL_SUBGAP
  status: OPEN
  significance: >-
    This boundary prevents domain-only over-propagation of cullin scaffold activity
    while preserving the experimentally supported CRL3-Keap1/Nrf2 regulatory role.
  resolution: >-
    Map CACUL1 deletion mutants against Keap1, Cul3, Rbx1, and Nrf2; assay CRL3
    ubiquitination activity with purified components; and test whether CACUL1 affects
    other CRL3-Keap1 or Cul3 substrates.
  provenance:
  - reference_id: PMID:26238671
    supporting_text: >-
      CACUL1 is a regulator of Nrf2 ubiquitination, adding another regulatory layer
      to the Nrf2 antioxidant stress response.
    reference_section_type: ABSTRACT
  - reference_id: file:human/CACUL1/CACUL1-pn-notes.md
    supporting_text: >-
      there is no experimental evidence that it nucleates a functional cullin-RING
      ubiquitin ligase or carries a neddylation/RBX module
- gap_statement: >-
    The physiological context and directionality of CACUL1 nuclear-receptor
    coregulation remain only partly defined, especially whether ERalpha, androgen
    receptor, and PPARgamma effects represent one general chromatin mechanism or
    distinct receptor- and cell-type-specific activities.
  boundary: >-
    CACUL1 can bind nuclear receptors and repress ERalpha- and PPARgamma-dependent
    transcription with LSD1/SIRT1-linked chromatin changes. The unresolved part is
    which tissues and metabolic or hormonal states require this activity in vivo,
    and when CACUL1 acts as a corepressor versus a co-regulator with different
    directionality.
  gap_kind:
  - BIOLOGY
  dark_aspect: RESIDUAL_SUBGAP
  status: OPEN
  significance: >-
    Nuclear-receptor corepression is experimentally supported but may be highly
    context-dependent; resolving context will determine whether CACUL1 should be
    treated as a broadly relevant transcriptional regulator or a narrower adipocyte
    and hormone-response modulator.
  resolution: >-
    Combine receptor-specific ChIP-seq/CUT&RUN, transcriptomics, and CACUL1 loss-
    and gain-of-function in relevant adipocyte and hormone-responsive models,
    followed by in vivo perturbation where feasible.
  provenance:
  - reference_id: PMID:29233982
    supporting_text: >-
      The physiological significance of CACUL1-mediated PPARγ repression under
      different dietary conditions is of potential interest.
    reference_section_type: DISCUSSION
  - reference_id: PMID:29233982
    supporting_text: >-
      Therefore, adipogenesis may be fine-tuned by dynamic regulation of PPARγ in
      response to different dietary conditions.
    reference_section_type: DISCUSSION
proposed_new_terms: []
suggested_questions:
- question: >-
    Does CACUL1 act as a bona fide CDK2 regulator through a direct
    structural/allosteric mechanism, or indirectly via cyclin or CDK-inhibitor
    levels?
- question: >-
    Is the nuclear-receptor co-regulatory activity of CACUL1 (ERalpha repression
    via LSD1, and the separately reported androgen-receptor co-regulation)
    physiologically significant, and how is its directionality (corepressor vs
    coactivator) determined?
- question: >-
    CACUL1 binds the Cul3-Keap1-Rbx1 (CRL3) complex and negatively regulates Nrf2
    ubiquitination (PMID:26238671) without nucleating its own ligase - does its
    cullin-repeat-like domain mediate this CRL3 association, and is the regulation
    Nrf2-specific or a more general modulation of CRL3-Keap1 substrate
    ubiquitination?
suggested_experiments:
- description: >-
    In vitro reconstituted CDK2 kinase assays with purified recombinant CACUL1 to
    test whether it directly stimulates CDK2 activity, and structural/biophysical
    mapping (e.g., cryo-EM or co-crystallization, HDX-MS) of the CACUL1-CDK2
    interface.
  experiment_type: biochemical/structural
  hypothesis: >-
    CACUL1 directly binds and allosterically activates CDK2 independent of cyclin
    levels.
- description: >-
    Affinity purification-mass spectrometry of endogenous CACUL1 across cell-cycle
    stages to define its stable interactome and test for any RBX/neddylation or
    cullin-RING ligase components.
  experiment_type: proteomics
  hypothesis: >-
    CACUL1 does not assemble a canonical cullin-RING ligase and instead functions
    through CDK2 and nuclear-receptor/chromatin partners.
- description: >-
    ChIP-seq and reporter assays for CACUL1 at ERalpha- and androgen-receptor-
    responsive promoters with and without LSD1, to define its co-regulatory
    direction and chromatin effects.
  experiment_type: genomics/transcription
  hypothesis: >-
    CACUL1 modulates nuclear-receptor target genes through LSD1-dependent changes
    in histone methylation.
references:
- id: GO_REF:0000002
  title: Gene Ontology annotation through association of InterPro records with GO
    terms
  findings: []
- id: GO_REF:0000033
  title: Annotation inferences using phylogenetic trees
  findings: []
- id: PMID:19829063
  title: Identification and characterization of CAC1 as a novel CDK2-associated cullin.
  findings:
  - statement: >-
      CACUL1/CAC1 is a 369-aa cullin-domain protein that physically associates
      with CDK2, promotes CDK2 kinase activity, and is required for G1/S
      progression and proliferation; highly expressed in cancers.
    supporting_text: >-
      CAC1 interacts with CDK2 and promotes the kinase activity of CDK2 protein,
      we propose that CAC1 is a novel cell cycle associated protein capable of
      promoting cell proliferation.
- id: PMID:23178685
  title: Negative regulation of ERα by a novel protein CAC1 through association with
    histone demethylase LSD1.
  findings:
  - statement: >-
      CAC1 binds ERalpha via its CoRNR box and, in association with LSD1,
      functions as an ERalpha corepressor, increasing H3K9me3 at ERalpha target
      promoters.
    supporting_text: >-
      CAC1, associated with LSD1, functions as an ERα corepressor, implicating a
      potential antitumor target in ERα-positive breast cancer.
- id: PMID:28169274
  title: Armc5 deletion causes developmental defects and compromises T-cell immune
    responses.
  findings:
  - statement: >-
      CACUL1 was recovered as one of 16 ARMC5-binding partners in a yeast
      two-hybrid screen; the study characterizes ARMC5, not CACUL1.
    supporting_text: Yeast 2-hybrid assays identify 16 ARMC5-binding partners.
- id: PMID:26238671
  title: CACUL1/CAC1 Regulates the Antioxidant Response by Stabilizing Nrf2.
  findings:
  - statement: >-
      CACUL1 binds the Cul3-Keap1-Rbx1 ubiquitin-ligase complex and attenuates
      Nrf2 ubiquitination, stabilizing Nrf2 (half-life ~10 -> ~30 min) and
      sensitizing cells for the antioxidant (ARE) response; CACUL1 is itself
      oxidative-stress-induced.
    supporting_text: >-
      we further assessed CACUL1 binding with Keap1, Cul3 and Rbx1, the
      components of the Ubiquitin ligase responsible for Nrf2 ubiquitination.
  reference_review:
    relevance: HIGH
    correctness: VERIFIED
    review_notes: >-
      PMID resolved from DOI 10.1038/srep12857 via NCBI and the cached title
      matches; supporting_text quotes are verbatim from the cached full text.
      Provides experimental support that upgrades the previously domain-only
      ubiquitin-ligase-binding (GO:0031625) and reframes the ubiquitin-catabolism
      IEA as negative regulation of ubiquitination (GO:0031397).
- id: PMID:29233982
  title: CACUL1 reciprocally regulates SIRT1 and LSD1 to repress PPARγ and inhibit
    adipogenesis.
  findings:
  - statement: >-
      CACUL1 is a SIRT1-interacting protein that physically binds PPARgamma and
      represses its transcriptional activity by coordinating SIRT1 and LSD1 at
      target promoters (altering H3K9 acetylation/methylation), suppressing
      adipocyte differentiation.
    supporting_text: >-
      CACUL1, identified as a novel SIRT1 interacting protein, physically
      interacts with PPARγ and represses its transcriptional activity,
      suppressing adipocyte differentiation
  reference_review:
    relevance: HIGH
    correctness: VERIFIED
    review_notes: >-
      PMID resolved from DOI 10.1038/s41419-017-0070-z via NCBI and the cached
      title matches; supporting_text quotes are verbatim from the cached full
      text. Establishes a SIRT1/LSD1-coupled nuclear-receptor (PPARgamma)
      transcription-corepressor activity, broadening the ERalpha co-regulator
      report.
