CALM3 encodes one of the three human calmodulin genes and produces the same 149 aa calmodulin protein encoded by CALM1 and CALM2. The protein is a ubiquitous calcium sensor with four EF-hand motifs that binds calcium and regulates ion channels, protein kinases, protein phosphatases, and cell-division machinery. For this review, annotations were interpreted at the protein level: core calcium-sensing functions transfer well across the calmodulin family because the encoded protein sequence is identical, whereas tissue-specific neuronal, cardiac, and subcellular-context terms are kept as non-core when they likely reflect expression or recruitment differences rather than a CALM3-specific biochemical difference. CALM3 variants contribute to calmodulinopathy, including CPVT and long-QT phenotypes driven by dysregulated calcium-channel signaling.
| GO Term | Evidence | Action | Reason |
|---|---|---|---|
|
GO:0005737
cytoplasm
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Primary cytoplasmic localization
Reason: Core calmodulin function or localization
|
|
GO:0005509
calcium ion binding
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Core calcium-binding function through 4 EF-hand domains
Reason: Core calmodulin function or localization
|
|
GO:0005634
nucleus
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Nuclear localization in some contexts
Reason: Tissue-specific or specialized function
|
|
GO:0010880
regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Regulates RyR-mediated calcium release from SR
Reason: Core calmodulin function or localization
|
|
GO:0005513
detection of calcium ion
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Core calcium sensing function
Reason: Core calmodulin function or localization
|
|
GO:0097720
calcineurin-mediated signaling
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Activates calcineurin phosphatase for NFAT signaling
Reason: Core calmodulin function or localization
|
|
GO:0005813
centrosome
|
IBA
GO_REF:0000033 |
ACCEPT |
Summary: Centrosomal localization for cell division
Reason: Core calmodulin function or localization
|
|
GO:0043209
myelin sheath
|
IBA
GO_REF:0000033 |
KEEP AS NON CORE |
Summary: Myelin sheath localization
Reason: Tissue-specific or specialized function
|
|
GO:0000922
spindle pole
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Spindle pole localization during mitosis
Reason: Core calmodulin function or localization
|
|
GO:0002027
regulation of heart rate
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: Heart rate regulation through ion channel modulation
Reason: Core calmodulin function or localization
|
|
GO:0005246
calcium channel regulator activity
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: Regulates L-type calcium channels and ryanodine receptors
Reason: Core calmodulin function or localization
|
|
GO:0005509
calcium ion binding
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Core calcium-binding function through 4 EF-hand domains
Reason: Core calmodulin function or localization
|
|
GO:0005513
detection of calcium ion
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: Core calcium sensing function
Reason: Core calmodulin function or localization
|
|
GO:0005813
centrosome
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Centrosomal localization for cell division
Reason: Core calmodulin function or localization
|
|
GO:0005819
spindle
|
IEA
GO_REF:0000044 |
ACCEPT |
Summary: Spindle localization for cell division
Reason: Core calmodulin function or localization
|
|
GO:0005876
spindle microtubule
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: Spindle microtubule association
Reason: Core calmodulin function or localization
|
|
GO:0010856
adenylate cyclase activator activity
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: Activates adenylate cyclase for cAMP signaling
Reason: Core calmodulin function or localization
|
|
GO:0010881
regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: Cardiac calcium-induced calcium release regulation
Reason: Core calmodulin function or localization
|
|
GO:0019901
protein kinase binding
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: Binds CaMK family and other protein kinases
Reason: Core calmodulin function or localization
|
|
GO:0030017
sarcomere
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: Sarcomere localization in muscle
Reason: Tissue-specific or specialized function
|
|
GO:0031432
titin binding
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: Titin binding in muscle
Reason: Tissue-specific or specialized function
|
|
GO:0032465
regulation of cytokinesis
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: Cytokinesis regulation with CP110 and centrin
Reason: Core calmodulin function or localization
|
|
GO:0034704
calcium channel complex
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: Component of calcium channel complexes
Reason: Core calmodulin function or localization
|
|
GO:0043539
protein serine/threonine kinase activator activity
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: Activates CaMKII and other calcium-dependent kinases
Reason: Core calmodulin function or localization
|
|
GO:0060291
long-term synaptic potentiation
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: Long-term synaptic potentiation reflects specialized neuronal signaling.
Reason: Calmodulin is important for synaptic plasticity, but this is a tissue-specific downstream context and should not be used to distinguish CALM3 from CALM1 or CALM2.
|
|
GO:0072542
protein phosphatase activator activity
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: Activates calcineurin (PP2B) phosphatase
Reason: Core calmodulin function or localization
|
|
GO:0097720
calcineurin-mediated signaling
|
IEA
GO_REF:0000117 |
ACCEPT |
Summary: Activates calcineurin phosphatase for NFAT signaling
Reason: Core calmodulin function or localization
|
|
GO:1901844
regulation of cell communication by electrical coupling involved in cardiac conduction
|
IEA
GO_REF:0000117 |
KEEP AS NON CORE |
Summary: Cardiac electrical coupling regulation
Reason: Tissue-specific or specialized function
|
|
GO:0005515
protein binding
|
IPI
PMID:35271311 OpenCell: Endogenous tagging for the cartography of human ce... |
MARK AS OVER ANNOTATED |
Summary: Too general - more specific terms available
Reason: Too general - more specific terms are available
|
|
GO:0000785
chromatin
|
IEA
GO_REF:0000120 |
KEEP AS NON CORE |
Summary: Chromatin association
Reason: Tissue-specific or specialized function
|
|
GO:0001975
response to amphetamine
|
IEA
GO_REF:0000120 |
KEEP AS NON CORE |
Summary: Amphetamine response in neurons
Reason: Tissue-specific or specialized function
|
|
GO:0005634
nucleus
|
IEA
GO_REF:0000120 |
KEEP AS NON CORE |
Summary: Nuclear localization in some contexts
Reason: Tissue-specific or specialized function
|
|
GO:0008076
voltage-gated potassium channel complex
|
IEA
GO_REF:0000120 |
KEEP AS NON CORE |
Summary: KCNQ channel complex component
Reason: Tissue-specific or specialized function
|
|
GO:0016020
membrane
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: General membrane localization is plausible but not a core assignment.
Reason: Calmodulin is recruited to membrane-associated channels and receptors, but broad membrane localization is secondary to its core soluble calcium-sensor role.
|
|
GO:0019904
protein domain specific binding
|
IEA
GO_REF:0000120 |
KEEP AS NON CORE |
Summary: IQ motif and calmodulin-binding domain recognition
Reason: Tissue-specific or specialized function
|
|
GO:0030235
nitric-oxide synthase regulator activity
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Regulates NOS enzymes
Reason: Core calmodulin function or localization
|
|
GO:0030426
growth cone
|
IEA
GO_REF:0000120 |
KEEP AS NON CORE |
Summary: Neuronal growth cone localization
Reason: Tissue-specific or specialized function
|
|
GO:0030672
synaptic vesicle membrane
|
IEA
GO_REF:0000120 |
KEEP AS NON CORE |
Summary: Synaptic vesicle localization
Reason: Tissue-specific or specialized function
|
|
GO:0031800
type 3 metabotropic glutamate receptor binding
|
IEA
GO_REF:0000120 |
KEEP AS NON CORE |
Summary: mGluR3 binding in neurons
Reason: Tissue-specific or specialized function
|
|
GO:0031966
mitochondrial membrane
|
IEA
GO_REF:0000120 |
KEEP AS NON CORE |
Summary: Mitochondrial membrane association
Reason: Tissue-specific or specialized function
|
|
GO:0031982
vesicle
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: Vesicle association is observed in specialized trafficking or exosome contexts.
Reason: Vesicle localization reflects specific cell-type and trafficking contexts rather than a defining family-wide localization for the identical calmodulin protein.
|
|
GO:0043209
myelin sheath
|
IEA
GO_REF:0000120 |
KEEP AS NON CORE |
Summary: Myelin sheath localization
Reason: Tissue-specific or specialized function
|
|
GO:0043548
phosphatidylinositol 3-kinase binding
|
IEA
GO_REF:0000120 |
KEEP AS NON CORE |
Summary: PI3K binding for signaling
Reason: Tissue-specific or specialized function
|
|
GO:0044305
calyx of Held
|
IEA
GO_REF:0000120 |
KEEP AS NON CORE |
Summary: Calyx of Held synapse localization
Reason: Tissue-specific or specialized function
|
|
GO:0044325
transmembrane transporter binding
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Binds ion channels and transporters
Reason: Core calmodulin function or localization
|
|
GO:0048306
calcium-dependent protein binding
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Calcium-dependent target protein binding
Reason: Core calmodulin function or localization
|
|
GO:0050998
nitric-oxide synthase binding
|
IEA
GO_REF:0000120 |
ACCEPT |
Summary: Binds NOS for activation
Reason: Core calmodulin function or localization
|
|
GO:0051412
response to corticosterone
|
IEA
GO_REF:0000120 |
KEEP AS NON CORE |
Summary: Corticosterone response
Reason: Tissue-specific or specialized function
|
|
GO:0097225
sperm midpiece
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: Sperm midpiece localization
Reason: Tissue-specific or specialized function
|
|
GO:0098685
Schaffer collateral - CA1 synapse
|
IEA
GO_REF:0000120 |
KEEP AS NON CORE |
Summary: Hippocampal synapse localization
Reason: Tissue-specific or specialized function
|
|
GO:0099523
presynaptic cytosol
|
IEA
GO_REF:0000120 |
KEEP AS NON CORE |
Summary: Presynaptic localization
Reason: Tissue-specific or specialized function
|
|
GO:0099524
postsynaptic cytosol
|
IEA
GO_REF:0000120 |
KEEP AS NON CORE |
Summary: Postsynaptic localization
Reason: Tissue-specific or specialized function
|
|
GO:0140238
presynaptic endocytosis
|
IEA
GO_REF:0000120 |
KEEP AS NON CORE |
Summary: Presynaptic vesicle endocytosis
Reason: Tissue-specific or specialized function
|
|
GO:0141110
transporter inhibitor activity
|
IEA
GO_REF:0000107 |
MARK AS OVER ANNOTATED |
Summary: This term is too specific for the available transfer evidence.
Reason: Calmodulin modulates multiple transporters and channels, but a generic transporter inhibitor term overstates a context-dependent regulatory effect.
|
|
GO:1900242
regulation of synaptic vesicle endocytosis
|
IEA
GO_REF:0000120 |
KEEP AS NON CORE |
Summary: Synaptic vesicle endocytosis regulation
Reason: Tissue-specific or specialized function
|
|
GO:1905913
negative regulation of calcium ion export across plasma membrane
|
IEA
GO_REF:0000107 |
KEEP AS NON CORE |
Summary: Negative regulation of calcium export is plausible in channel-regulatory contexts but not a core assignment.
Reason: This term reflects a specific downstream physiological setting of calmodulin-dependent channel regulation rather than a defining family-wide process.
|
|
GO:2000300
regulation of synaptic vesicle exocytosis
|
IEA
GO_REF:0000120 |
KEEP AS NON CORE |
Summary: Synaptic vesicle exocytosis regulation
Reason: Tissue-specific or specialized function
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-9956602 |
ACCEPT |
Summary: Soluble cytosolic protein
Reason: Core calmodulin function or localization
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-9956624 |
ACCEPT |
Summary: Soluble cytosolic protein
Reason: Core calmodulin function or localization
|
|
GO:0005829
cytosol
|
TAS
Reactome:R-HSA-9956667 |
ACCEPT |
Summary: Soluble cytosolic protein
Reason: Core calmodulin function or localization
|
|
GO:0010881
regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion
|
IDA
PMID:23040497 Mutations in calmodulin cause ventricular tachycardia and su... |
ACCEPT |
Summary: Cardiac calcium-induced calcium release regulation
Reason: Core calmodulin function or localization
|
|
GO:1901844
regulation of cell communication by electrical coupling involved in cardiac conduction
|
IDA
PMID:23040497 Mutations in calmodulin cause ventricular tachycardia and su... |
KEEP AS NON CORE |
Summary: Cardiac electrical coupling regulation
Reason: Tissue-specific or specialized function
|
|
GO:0005246
calcium channel regulator activity
|
IDA
PMID:20226167 Defective calmodulin binding to the cardiac ryanodine recept... |
ACCEPT |
Summary: Regulates L-type calcium channels and ryanodine receptors
Reason: Core calmodulin function or localization
|
|
GO:0010881
regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion
|
IDA
PMID:20226167 Defective calmodulin binding to the cardiac ryanodine recept... |
ACCEPT |
Summary: Cardiac calcium-induced calcium release regulation
Reason: Core calmodulin function or localization
|
|
GO:0060291
long-term synaptic potentiation
|
TAS
PMID:20668654 Structure of the CaMKIIdelta/calmodulin complex reveals the ... |
KEEP AS NON CORE |
Summary: Long-term synaptic potentiation reflects specialized neuronal signaling.
Reason: Calmodulin is important for synaptic plasticity, but this is a tissue-specific downstream context and should not be used to distinguish CALM3 from CALM1 or CALM2.
|
|
GO:0097720
calcineurin-mediated signaling
|
IDA
PMID:8631777 Blocking the Ca2+-induced conformational transitions in calm... |
ACCEPT |
Summary: Activates calcineurin phosphatase for NFAT signaling
Reason: Core calmodulin function or localization
|
|
GO:0005515
protein binding
|
IPI
PMID:11984006 The Chediak-Higashi protein interacts with SNARE complex and... |
MARK AS OVER ANNOTATED |
Summary: Too general - more specific terms available
Reason: Too general - more specific terms are available
|
|
GO:0005515
protein binding
|
IPI
PMID:19855925 Structural analysis of the complex between calmodulin and fu... |
MARK AS OVER ANNOTATED |
Summary: Too general - more specific terms available
Reason: Too general - more specific terms are available
|
|
GO:0005509
calcium ion binding
|
IDA
PMID:35568036 A family of conserved bacterial virulence factors dampens in... |
ACCEPT |
Summary: Core calcium-binding function through 4 EF-hand domains
Reason: Core calmodulin function or localization
|
|
GO:0043539
protein serine/threonine kinase activator activity
|
IDA
PMID:35568036 A family of conserved bacterial virulence factors dampens in... |
ACCEPT |
Summary: Activates CaMKII and other calcium-dependent kinases
Reason: Core calmodulin function or localization
|
|
GO:0005509
calcium ion binding
|
IDA
PMID:31454269 Genetic Mosaicism in Calmodulinopathy. |
ACCEPT |
Summary: Core calcium-binding function through 4 EF-hand domains
Reason: Core calmodulin function or localization
|
|
GO:0098901
regulation of cardiac muscle cell action potential
|
IMP
PMID:31454269 Genetic Mosaicism in Calmodulinopathy. |
KEEP AS NON CORE |
Summary: Cardiac action potential regulation
Reason: Tissue-specific or specialized function
|
|
GO:1901842
negative regulation of high voltage-gated calcium channel activity
|
IMP
PMID:31454269 Genetic Mosaicism in Calmodulinopathy. |
KEEP AS NON CORE |
Summary: Calcium channel activity regulation
Reason: Tissue-specific or specialized function
|
|
GO:0010856
adenylate cyclase activator activity
|
IDA
PMID:11807546 Structural basis for the activation of anthrax adenylyl cycl... |
ACCEPT |
Summary: Activates adenylate cyclase for cAMP signaling
Reason: Core calmodulin function or localization
|
|
GO:0034704
calcium channel complex
|
IDA
PMID:23040497 Mutations in calmodulin cause ventricular tachycardia and su... |
ACCEPT |
Summary: Component of calcium channel complexes
Reason: Core calmodulin function or localization
|
|
GO:0000922
spindle pole
|
IDA
PMID:16760425 CP110 cooperates with two calcium-binding proteins to regula... |
ACCEPT |
Summary: Spindle pole localization during mitosis
Reason: Core calmodulin function or localization
|
|
GO:0005515
protein binding
|
IPI
PMID:10692436 Ca(2+)-dependent and Ca(2+)-independent calmodulin binding s... |
MARK AS OVER ANNOTATED |
Summary: Too general - more specific terms available
Reason: Too general - more specific terms are available
|
|
GO:0005515
protein binding
|
IPI
PMID:15140941 Ca2+-binding protein-1 facilitates and forms a postsynaptic ... |
MARK AS OVER ANNOTATED |
Summary: Too general - more specific terms available
Reason: Too general - more specific terms are available
|
|
GO:0005515
protein binding
|
IPI
PMID:15632291 Myristoyl moiety of HIV Nef is involved in regulation of the... |
MARK AS OVER ANNOTATED |
Summary: Too general - more specific terms available
Reason: Too general - more specific terms are available
|
|
GO:0005515
protein binding
|
IPI
PMID:16760425 CP110 cooperates with two calcium-binding proteins to regula... |
MARK AS OVER ANNOTATED |
Summary: Too general - more specific terms available
Reason: Too general - more specific terms are available
|
|
GO:0005515
protein binding
|
IPI
PMID:21299499 IQ-motif selectivity in human IQGAP2 and IQGAP3: binding of ... |
MARK AS OVER ANNOTATED |
Summary: Too general - more specific terms available
Reason: Too general - more specific terms are available
|
|
GO:0005515
protein binding
|
IPI
PMID:3111527 Comparison of S100b protein with calmodulin: interactions wi... |
MARK AS OVER ANNOTATED |
Summary: Too general - more specific terms available
Reason: Too general - more specific terms are available
|
|
GO:0005634
nucleus
|
HDA
PMID:21630459 Proteomic characterization of the human sperm nucleus. |
KEEP AS NON CORE |
Summary: Nuclear localization in some contexts
Reason: Tissue-specific or specialized function
|
|
GO:0005737
cytoplasm
|
TAS
PMID:10899953 Calmodulin regulation of basal and agonist-stimulated G prot... |
ACCEPT |
Summary: Primary cytoplasmic localization
Reason: Core calmodulin function or localization
|
|
GO:0005813
centrosome
|
IDA
PMID:16760425 CP110 cooperates with two calcium-binding proteins to regula... |
ACCEPT |
Summary: Centrosomal localization for cell division
Reason: Core calmodulin function or localization
|
|
GO:0005876
spindle microtubule
|
IDA
PMID:16760425 CP110 cooperates with two calcium-binding proteins to regula... |
ACCEPT |
Summary: Spindle microtubule association
Reason: Core calmodulin function or localization
|
|
GO:0005886
plasma membrane
|
TAS
PMID:10899953 Calmodulin regulation of basal and agonist-stimulated G prot... |
KEEP AS NON CORE |
Summary: Plasma membrane association occurs in specific signaling contexts.
Reason: Calmodulin can associate with membrane-proximal receptor and channel complexes, but plasma membrane residence is context dependent rather than a defining family-wide localization.
|
|
GO:0007186
G protein-coupled receptor signaling pathway
|
TAS
PMID:10899953 Calmodulin regulation of basal and agonist-stimulated G prot... |
KEEP AS NON CORE |
Summary: Calmodulin modulates selected GPCR signaling pathways in specialized contexts.
Reason: This captures a real signaling interaction, but the evidence is receptor- and context-specific and should not be treated as a defining CALM3 function relative to the other calmodulin paralogs.
|
|
GO:0021762
substantia nigra development
|
HEP
PMID:22926577 Quantitative proteomic analysis of human substantia nigra in... |
REMOVE |
Summary: Proteomic detection in substantia nigra does not justify a developmental annotation.
Reason: The cited evidence is expression/proteomics in diseased tissue, not functional evidence for substantia nigra development.
|
|
GO:0031982
vesicle
|
HDA
PMID:19190083 Characterization of exosome-like vesicles released from huma... |
KEEP AS NON CORE |
Summary: Vesicle association is observed in specialized trafficking or exosome contexts.
Reason: Vesicle localization reflects specific cell-type and trafficking contexts rather than a defining family-wide localization for the identical calmodulin protein.
|
|
GO:0032465
regulation of cytokinesis
|
IMP
PMID:16760425 CP110 cooperates with two calcium-binding proteins to regula... |
ACCEPT |
Summary: Cytokinesis regulation with CP110 and centrin
Reason: Core calmodulin function or localization
|
|
GO:0005509
calcium ion binding
|
IDA
PMID:11807546 Structural basis for the activation of anthrax adenylyl cycl... |
ACCEPT |
Summary: Core calcium-binding function through 4 EF-hand domains
Reason: Core calmodulin function or localization
|
|
GO:0008179
adenylate cyclase binding
|
IPI
PMID:11807546 Structural basis for the activation of anthrax adenylyl cycl... |
KEEP AS NON CORE |
Summary: Direct adenylate cyclase binding is supported, but mainly in host-pathogen interaction studies.
Reason: The interaction is real biochemistry for calmodulin, but the cited evidence centers on bacterial edema-factor activation rather than a defining endogenous CALM3 role.
|
|
GO:0032991
protein-containing complex
|
IDA
PMID:19855925 Structural analysis of the complex between calmodulin and fu... |
MARK AS OVER ANNOTATED |
Summary: Too general - more specific terms available
Reason: Too general - more specific terms are available
|
|
GO:1902494
catalytic complex
|
IDA
PMID:11807546 Structural basis for the activation of anthrax adenylyl cycl... |
KEEP AS NON CORE |
Summary: Part of enzyme complexes
Reason: Tissue-specific or specialized function
|
|
GO:0002027
regulation of heart rate
|
IMP
PMID:23040497 Mutations in calmodulin cause ventricular tachycardia and su... |
ACCEPT |
Summary: Heart rate regulation through ion channel modulation
Reason: Core calmodulin function or localization
|
|
GO:0005509
calcium ion binding
|
IDA
PMID:23040497 Mutations in calmodulin cause ventricular tachycardia and su... |
ACCEPT |
Summary: Core calcium-binding function through 4 EF-hand domains
Reason: Core calmodulin function or localization
|
|
GO:0005509
calcium ion binding
|
IDA
PMID:7607248 A calmodulin-binding sequence in the C-terminus of human car... |
ACCEPT |
Summary: Core calcium-binding function through 4 EF-hand domains
Reason: Core calmodulin function or localization
|
|
GO:0005509
calcium ion binding
|
IDA
PMID:8631777 Blocking the Ca2+-induced conformational transitions in calm... |
ACCEPT |
Summary: Core calcium-binding function through 4 EF-hand domains
Reason: Core calmodulin function or localization
|
|
GO:0005513
detection of calcium ion
|
IMP
PMID:23040497 Mutations in calmodulin cause ventricular tachycardia and su... |
ACCEPT |
Summary: Core calcium sensing function
Reason: Core calmodulin function or localization
|
|
GO:0010880
regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum
|
IDA
PMID:20226167 Defective calmodulin binding to the cardiac ryanodine recept... |
ACCEPT |
Summary: Regulates RyR-mediated calcium release from SR
Reason: Core calmodulin function or localization
|
|
GO:0019901
protein kinase binding
|
IPI
PMID:20668654 Structure of the CaMKIIdelta/calmodulin complex reveals the ... |
ACCEPT |
Summary: Binds CaMK family and other protein kinases
Reason: Core calmodulin function or localization
|
|
GO:0030017
sarcomere
|
IDA
PMID:20226167 Defective calmodulin binding to the cardiac ryanodine recept... |
KEEP AS NON CORE |
Summary: Sarcomere localization in muscle
Reason: Tissue-specific or specialized function
|
|
GO:0031432
titin binding
|
IPI
PMID:7607248 A calmodulin-binding sequence in the C-terminus of human car... |
KEEP AS NON CORE |
Summary: Titin binding in muscle
Reason: Tissue-specific or specialized function
|
|
GO:0043539
protein serine/threonine kinase activator activity
|
TAS
PMID:20668654 Structure of the CaMKIIdelta/calmodulin complex reveals the ... |
ACCEPT |
Summary: Activates CaMKII and other calcium-dependent kinases
Reason: Core calmodulin function or localization
|
|
GO:0044325
transmembrane transporter binding
|
IPI
PMID:21167176 Solution NMR structure of Apo-calmodulin in complex with the... |
ACCEPT |
Summary: Binds ion channels and transporters
Reason: Core calmodulin function or localization
|
|
GO:0044325
transmembrane transporter binding
|
IPI
PMID:23040497 Mutations in calmodulin cause ventricular tachycardia and su... |
ACCEPT |
Summary: Binds ion channels and transporters
Reason: Core calmodulin function or localization
|
|
GO:0051592
response to calcium ion
|
IDA
PMID:7607248 A calmodulin-binding sequence in the C-terminus of human car... |
KEEP AS NON CORE |
Summary: Response to calcium ion
Reason: Tissue-specific or specialized function
|
|
GO:0055117
regulation of cardiac muscle contraction
|
IMP
PMID:23040497 Mutations in calmodulin cause ventricular tachycardia and su... |
ACCEPT |
Summary: Cardiac contraction through calcium channel regulation
Reason: Core calmodulin function or localization
|
|
GO:0072542
protein phosphatase activator activity
|
IDA
PMID:8631777 Blocking the Ca2+-induced conformational transitions in calm... |
ACCEPT |
Summary: Activates calcineurin (PP2B) phosphatase
Reason: Core calmodulin function or localization
|
|
GO:0005509
calcium ion binding
|
IDA
PMID:27516456 Novel CPVT-Associated Calmodulin Mutation in CALM3 (CALM3-A1... |
ACCEPT |
Summary: Core calcium-binding function through 4 EF-hand domains
Reason: Core calmodulin function or localization
|
CALM3 GOA file fetched on 2026-03-19 contains no literal ISO evidence-code rows, but it does contain multiple transferred annotations (IBA and IEA). I reviewed those in the spirit of [projects/ISO.md] by asking whether a term is safe to transfer across the human calmodulin paralogs.CALM1, CALM2, and CALM3, and all three encode an identical 149 aa calmodulin polypeptide PMID:27516456 PMID:31454269.CALM3 was reported to be more highly transcribed than CALM1 or CALM2 PMID:9681195.CALM3: defective calmodulin regulation of RyR2 increases spontaneous calcium release events PMID:20226167 and the CALM3 A103V mutation promotes arrhythmogenic calcium waves and sparks PMID:27516456.CALM3 also has direct human disease evidence for impaired L-type calcium channel regulation and action potential phenotypes in calmodulinopathy PMID:31454269.CALM3 from CALM1 / CALM2: synaptic localizations, myelin-associated terms, sperm terms, and specialized membrane-trafficking terms likely reflect cell-type context layered on top of the same calmodulin protein sequence rather than a CALM3-specific biochemical innovation PMID:9681195.substantia nigra development is based on proteomic detection in diseased tissue rather than developmental perturbation PMID:22926577.protein binding annotations are not informative for calmodulin and should not be favored when more specific regulator/binding terms are available.CALM1, CALM2, and CALM3 all show the same 149 aa sequence summary and I found no ALTERNATIVE PRODUCTS block in these local records, so there is no isoform-specific caveat comparable to the splice-isoform project genes [file:human/CALM1/CALM1-uniprot.txt "SQ SEQUENCE 149 AA"] [file:human/CALM2/CALM2-uniprot.txt "SQ SEQUENCE 149 AA"] [file:human/CALM3/CALM3-uniprot.txt "SQ SEQUENCE 149 AA"].id: P0DP25
gene_symbol: CALM3
product_type: PROTEIN
status: COMPLETE
taxon:
id: NCBITaxon:9606
label: Homo sapiens
description: 'CALM3 encodes one of the three human calmodulin genes and produces the
same 149 aa calmodulin protein encoded by CALM1 and CALM2. The protein is a ubiquitous
calcium sensor with four EF-hand motifs that binds calcium and regulates ion channels,
protein kinases, protein phosphatases, and cell-division machinery. For this review,
annotations were interpreted at the protein level: core calcium-sensing functions
transfer well across the calmodulin family because the encoded protein sequence
is identical, whereas tissue-specific neuronal, cardiac, and subcellular-context
terms are kept as non-core when they likely reflect expression or recruitment differences
rather than a CALM3-specific biochemical difference. CALM3 variants contribute to
calmodulinopathy, including CPVT and long-QT phenotypes driven by dysregulated calcium-channel
signaling.'
existing_annotations:
- term:
id: GO:0005737
label: cytoplasm
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: Primary cytoplasmic localization
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0005509
label: calcium ion binding
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: Core calcium-binding function through 4 EF-hand domains
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0005634
label: nucleus
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: Nuclear localization in some contexts
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0010880
label: regulation of release of sequestered calcium ion into cytosol by sarcoplasmic
reticulum
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: Regulates RyR-mediated calcium release from SR
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0005513
label: detection of calcium ion
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: Core calcium sensing function
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0097720
label: calcineurin-mediated signaling
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: Activates calcineurin phosphatase for NFAT signaling
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0005813
label: centrosome
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: Centrosomal localization for cell division
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0043209
label: myelin sheath
evidence_type: IBA
original_reference_id: GO_REF:0000033
review:
summary: Myelin sheath localization
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0000922
label: spindle pole
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: Spindle pole localization during mitosis
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0002027
label: regulation of heart rate
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: Heart rate regulation through ion channel modulation
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0005246
label: calcium channel regulator activity
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: Regulates L-type calcium channels and ryanodine receptors
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0005509
label: calcium ion binding
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: Core calcium-binding function through 4 EF-hand domains
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0005513
label: detection of calcium ion
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: Core calcium sensing function
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0005813
label: centrosome
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: Centrosomal localization for cell division
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0005819
label: spindle
evidence_type: IEA
original_reference_id: GO_REF:0000044
review:
summary: Spindle localization for cell division
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0005876
label: spindle microtubule
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: Spindle microtubule association
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0010856
label: adenylate cyclase activator activity
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: Activates adenylate cyclase for cAMP signaling
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0010881
label: regulation of cardiac muscle contraction by regulation of the release of
sequestered calcium ion
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: Cardiac calcium-induced calcium release regulation
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0019901
label: protein kinase binding
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: Binds CaMK family and other protein kinases
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0030017
label: sarcomere
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: Sarcomere localization in muscle
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0031432
label: titin binding
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: Titin binding in muscle
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0032465
label: regulation of cytokinesis
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: Cytokinesis regulation with CP110 and centrin
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0034704
label: calcium channel complex
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: Component of calcium channel complexes
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0043539
label: protein serine/threonine kinase activator activity
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: Activates CaMKII and other calcium-dependent kinases
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0060291
label: long-term synaptic potentiation
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: Long-term synaptic potentiation reflects specialized neuronal signaling.
action: KEEP_AS_NON_CORE
reason: Calmodulin is important for synaptic plasticity, but this is a tissue-specific
downstream context and should not be used to distinguish CALM3 from CALM1 or
CALM2.
- term:
id: GO:0072542
label: protein phosphatase activator activity
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: Activates calcineurin (PP2B) phosphatase
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0097720
label: calcineurin-mediated signaling
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: Activates calcineurin phosphatase for NFAT signaling
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:1901844
label: regulation of cell communication by electrical coupling involved in cardiac
conduction
evidence_type: IEA
original_reference_id: GO_REF:0000117
review:
summary: Cardiac electrical coupling regulation
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:35271311
review:
summary: Too general - more specific terms available
action: MARK_AS_OVER_ANNOTATED
reason: Too general - more specific terms are available
- term:
id: GO:0000785
label: chromatin
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: Chromatin association
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0001975
label: response to amphetamine
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: Amphetamine response in neurons
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0005634
label: nucleus
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: Nuclear localization in some contexts
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0008076
label: voltage-gated potassium channel complex
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: KCNQ channel complex component
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0016020
label: membrane
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: General membrane localization is plausible but not a core assignment.
action: KEEP_AS_NON_CORE
reason: Calmodulin is recruited to membrane-associated channels and receptors,
but broad membrane localization is secondary to its core soluble calcium-sensor
role.
- term:
id: GO:0019904
label: protein domain specific binding
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: IQ motif and calmodulin-binding domain recognition
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0030235
label: nitric-oxide synthase regulator activity
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: Regulates NOS enzymes
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0030426
label: growth cone
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: Neuronal growth cone localization
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0030672
label: synaptic vesicle membrane
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: Synaptic vesicle localization
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0031800
label: type 3 metabotropic glutamate receptor binding
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: mGluR3 binding in neurons
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0031966
label: mitochondrial membrane
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: Mitochondrial membrane association
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0031982
label: vesicle
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: Vesicle association is observed in specialized trafficking or exosome
contexts.
action: KEEP_AS_NON_CORE
reason: Vesicle localization reflects specific cell-type and trafficking contexts
rather than a defining family-wide localization for the identical calmodulin
protein.
- term:
id: GO:0043209
label: myelin sheath
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: Myelin sheath localization
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0043548
label: phosphatidylinositol 3-kinase binding
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: PI3K binding for signaling
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0044305
label: calyx of Held
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: Calyx of Held synapse localization
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0044325
label: transmembrane transporter binding
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: Binds ion channels and transporters
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0048306
label: calcium-dependent protein binding
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: Calcium-dependent target protein binding
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0050998
label: nitric-oxide synthase binding
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: Binds NOS for activation
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0051412
label: response to corticosterone
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: Corticosterone response
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0097225
label: sperm midpiece
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: Sperm midpiece localization
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0098685
label: Schaffer collateral - CA1 synapse
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: Hippocampal synapse localization
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0099523
label: presynaptic cytosol
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: Presynaptic localization
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0099524
label: postsynaptic cytosol
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: Postsynaptic localization
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0140238
label: presynaptic endocytosis
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: Presynaptic vesicle endocytosis
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0141110
label: transporter inhibitor activity
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: This term is too specific for the available transfer evidence.
action: MARK_AS_OVER_ANNOTATED
reason: Calmodulin modulates multiple transporters and channels, but a generic
transporter inhibitor term overstates a context-dependent regulatory effect.
- term:
id: GO:1900242
label: regulation of synaptic vesicle endocytosis
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: Synaptic vesicle endocytosis regulation
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:1905913
label: negative regulation of calcium ion export across plasma membrane
evidence_type: IEA
original_reference_id: GO_REF:0000107
review:
summary: Negative regulation of calcium export is plausible in channel-regulatory
contexts but not a core assignment.
action: KEEP_AS_NON_CORE
reason: This term reflects a specific downstream physiological setting of calmodulin-dependent
channel regulation rather than a defining family-wide process.
- term:
id: GO:2000300
label: regulation of synaptic vesicle exocytosis
evidence_type: IEA
original_reference_id: GO_REF:0000120
review:
summary: Synaptic vesicle exocytosis regulation
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9956602
review:
summary: Soluble cytosolic protein
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9956624
review:
summary: Soluble cytosolic protein
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0005829
label: cytosol
evidence_type: TAS
original_reference_id: Reactome:R-HSA-9956667
review:
summary: Soluble cytosolic protein
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0010881
label: regulation of cardiac muscle contraction by regulation of the release of
sequestered calcium ion
evidence_type: IDA
original_reference_id: PMID:23040497
review:
summary: Cardiac calcium-induced calcium release regulation
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:1901844
label: regulation of cell communication by electrical coupling involved in cardiac
conduction
evidence_type: IDA
original_reference_id: PMID:23040497
review:
summary: Cardiac electrical coupling regulation
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0005246
label: calcium channel regulator activity
evidence_type: IDA
original_reference_id: PMID:20226167
review:
summary: Regulates L-type calcium channels and ryanodine receptors
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0010881
label: regulation of cardiac muscle contraction by regulation of the release of
sequestered calcium ion
evidence_type: IDA
original_reference_id: PMID:20226167
review:
summary: Cardiac calcium-induced calcium release regulation
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0060291
label: long-term synaptic potentiation
evidence_type: TAS
original_reference_id: PMID:20668654
review:
summary: Long-term synaptic potentiation reflects specialized neuronal signaling.
action: KEEP_AS_NON_CORE
reason: Calmodulin is important for synaptic plasticity, but this is a tissue-specific
downstream context and should not be used to distinguish CALM3 from CALM1 or
CALM2.
- term:
id: GO:0097720
label: calcineurin-mediated signaling
evidence_type: IDA
original_reference_id: PMID:8631777
review:
summary: Activates calcineurin phosphatase for NFAT signaling
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:11984006
review:
summary: Too general - more specific terms available
action: MARK_AS_OVER_ANNOTATED
reason: Too general - more specific terms are available
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:19855925
review:
summary: Too general - more specific terms available
action: MARK_AS_OVER_ANNOTATED
reason: Too general - more specific terms are available
- term:
id: GO:0005509
label: calcium ion binding
evidence_type: IDA
original_reference_id: PMID:35568036
review:
summary: Core calcium-binding function through 4 EF-hand domains
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0043539
label: protein serine/threonine kinase activator activity
evidence_type: IDA
original_reference_id: PMID:35568036
review:
summary: Activates CaMKII and other calcium-dependent kinases
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0005509
label: calcium ion binding
evidence_type: IDA
original_reference_id: PMID:31454269
review:
summary: Core calcium-binding function through 4 EF-hand domains
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0098901
label: regulation of cardiac muscle cell action potential
evidence_type: IMP
original_reference_id: PMID:31454269
review:
summary: Cardiac action potential regulation
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:1901842
label: negative regulation of high voltage-gated calcium channel activity
evidence_type: IMP
original_reference_id: PMID:31454269
review:
summary: Calcium channel activity regulation
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0010856
label: adenylate cyclase activator activity
evidence_type: IDA
original_reference_id: PMID:11807546
review:
summary: Activates adenylate cyclase for cAMP signaling
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0034704
label: calcium channel complex
evidence_type: IDA
original_reference_id: PMID:23040497
review:
summary: Component of calcium channel complexes
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0000922
label: spindle pole
evidence_type: IDA
original_reference_id: PMID:16760425
review:
summary: Spindle pole localization during mitosis
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:10692436
review:
summary: Too general - more specific terms available
action: MARK_AS_OVER_ANNOTATED
reason: Too general - more specific terms are available
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:15140941
review:
summary: Too general - more specific terms available
action: MARK_AS_OVER_ANNOTATED
reason: Too general - more specific terms are available
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:15632291
review:
summary: Too general - more specific terms available
action: MARK_AS_OVER_ANNOTATED
reason: Too general - more specific terms are available
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:16760425
review:
summary: Too general - more specific terms available
action: MARK_AS_OVER_ANNOTATED
reason: Too general - more specific terms are available
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:21299499
review:
summary: Too general - more specific terms available
action: MARK_AS_OVER_ANNOTATED
reason: Too general - more specific terms are available
- term:
id: GO:0005515
label: protein binding
evidence_type: IPI
original_reference_id: PMID:3111527
review:
summary: Too general - more specific terms available
action: MARK_AS_OVER_ANNOTATED
reason: Too general - more specific terms are available
- term:
id: GO:0005634
label: nucleus
evidence_type: HDA
original_reference_id: PMID:21630459
review:
summary: Nuclear localization in some contexts
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0005737
label: cytoplasm
evidence_type: TAS
original_reference_id: PMID:10899953
review:
summary: Primary cytoplasmic localization
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0005813
label: centrosome
evidence_type: IDA
original_reference_id: PMID:16760425
review:
summary: Centrosomal localization for cell division
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0005876
label: spindle microtubule
evidence_type: IDA
original_reference_id: PMID:16760425
review:
summary: Spindle microtubule association
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0005886
label: plasma membrane
evidence_type: TAS
original_reference_id: PMID:10899953
review:
summary: Plasma membrane association occurs in specific signaling contexts.
action: KEEP_AS_NON_CORE
reason: Calmodulin can associate with membrane-proximal receptor and channel complexes,
but plasma membrane residence is context dependent rather than a defining family-wide
localization.
- term:
id: GO:0007186
label: G protein-coupled receptor signaling pathway
evidence_type: TAS
original_reference_id: PMID:10899953
review:
summary: Calmodulin modulates selected GPCR signaling pathways in specialized
contexts.
action: KEEP_AS_NON_CORE
reason: This captures a real signaling interaction, but the evidence is receptor-
and context-specific and should not be treated as a defining CALM3 function
relative to the other calmodulin paralogs.
- term:
id: GO:0021762
label: substantia nigra development
evidence_type: HEP
original_reference_id: PMID:22926577
review:
summary: Proteomic detection in substantia nigra does not justify a developmental
annotation.
action: REMOVE
reason: The cited evidence is expression/proteomics in diseased tissue, not functional
evidence for substantia nigra development.
- term:
id: GO:0031982
label: vesicle
evidence_type: HDA
original_reference_id: PMID:19190083
review:
summary: Vesicle association is observed in specialized trafficking or exosome
contexts.
action: KEEP_AS_NON_CORE
reason: Vesicle localization reflects specific cell-type and trafficking contexts
rather than a defining family-wide localization for the identical calmodulin
protein.
- term:
id: GO:0032465
label: regulation of cytokinesis
evidence_type: IMP
original_reference_id: PMID:16760425
review:
summary: Cytokinesis regulation with CP110 and centrin
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0005509
label: calcium ion binding
evidence_type: IDA
original_reference_id: PMID:11807546
review:
summary: Core calcium-binding function through 4 EF-hand domains
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0008179
label: adenylate cyclase binding
evidence_type: IPI
original_reference_id: PMID:11807546
review:
summary: Direct adenylate cyclase binding is supported, but mainly in host-pathogen
interaction studies.
action: KEEP_AS_NON_CORE
reason: The interaction is real biochemistry for calmodulin, but the cited evidence
centers on bacterial edema-factor activation rather than a defining endogenous
CALM3 role.
- term:
id: GO:0032991
label: protein-containing complex
evidence_type: IDA
original_reference_id: PMID:19855925
review:
summary: Too general - more specific terms available
action: MARK_AS_OVER_ANNOTATED
reason: Too general - more specific terms are available
- term:
id: GO:1902494
label: catalytic complex
evidence_type: IDA
original_reference_id: PMID:11807546
review:
summary: Part of enzyme complexes
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0002027
label: regulation of heart rate
evidence_type: IMP
original_reference_id: PMID:23040497
review:
summary: Heart rate regulation through ion channel modulation
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0005509
label: calcium ion binding
evidence_type: IDA
original_reference_id: PMID:23040497
review:
summary: Core calcium-binding function through 4 EF-hand domains
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0005509
label: calcium ion binding
evidence_type: IDA
original_reference_id: PMID:7607248
review:
summary: Core calcium-binding function through 4 EF-hand domains
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0005509
label: calcium ion binding
evidence_type: IDA
original_reference_id: PMID:8631777
review:
summary: Core calcium-binding function through 4 EF-hand domains
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0005513
label: detection of calcium ion
evidence_type: IMP
original_reference_id: PMID:23040497
review:
summary: Core calcium sensing function
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0010880
label: regulation of release of sequestered calcium ion into cytosol by sarcoplasmic
reticulum
evidence_type: IDA
original_reference_id: PMID:20226167
review:
summary: Regulates RyR-mediated calcium release from SR
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0019901
label: protein kinase binding
evidence_type: IPI
original_reference_id: PMID:20668654
review:
summary: Binds CaMK family and other protein kinases
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0030017
label: sarcomere
evidence_type: IDA
original_reference_id: PMID:20226167
review:
summary: Sarcomere localization in muscle
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0031432
label: titin binding
evidence_type: IPI
original_reference_id: PMID:7607248
review:
summary: Titin binding in muscle
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0043539
label: protein serine/threonine kinase activator activity
evidence_type: TAS
original_reference_id: PMID:20668654
review:
summary: Activates CaMKII and other calcium-dependent kinases
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0044325
label: transmembrane transporter binding
evidence_type: IPI
original_reference_id: PMID:21167176
review:
summary: Binds ion channels and transporters
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0044325
label: transmembrane transporter binding
evidence_type: IPI
original_reference_id: PMID:23040497
review:
summary: Binds ion channels and transporters
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0051592
label: response to calcium ion
evidence_type: IDA
original_reference_id: PMID:7607248
review:
summary: Response to calcium ion
action: KEEP_AS_NON_CORE
reason: Tissue-specific or specialized function
- term:
id: GO:0055117
label: regulation of cardiac muscle contraction
evidence_type: IMP
original_reference_id: PMID:23040497
review:
summary: Cardiac contraction through calcium channel regulation
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0072542
label: protein phosphatase activator activity
evidence_type: IDA
original_reference_id: PMID:8631777
review:
summary: Activates calcineurin (PP2B) phosphatase
action: ACCEPT
reason: Core calmodulin function or localization
- term:
id: GO:0005509
label: calcium ion binding
evidence_type: IDA
original_reference_id: PMID:27516456
review:
summary: Core calcium-binding function through 4 EF-hand domains
action: ACCEPT
reason: Core calmodulin function or localization
references:
- id: GO_REF:0000033
title: Annotation inferences using phylogenetic trees
findings: []
- id: GO_REF:0000044
title: Gene Ontology annotation based on UniProtKB/Swiss-Prot Subcellular Location
vocabulary mapping, accompanied by conservative changes to GO terms applied by
UniProt
findings: []
- id: GO_REF:0000107
title: Automatic transfer of experimentally verified manual GO annotation data to
orthologs using Ensembl Compara
findings: []
- id: GO_REF:0000117
title: Electronic Gene Ontology annotations created by ARBA machine learning models
findings: []
- id: GO_REF:0000120
title: Combined Automated Annotation using Multiple IEA Methods
findings: []
- id: PMID:10692436
title: Ca(2+)-dependent and Ca(2+)-independent calmodulin binding sites in erythrocyte
protein 4.1. Implications for regulation of protein 4.1 interactions with transmembrane
proteins.
findings: []
- id: PMID:10899953
title: Calmodulin regulation of basal and agonist-stimulated G protein coupling
by the mu-opioid receptor (OP(3)) in morphine-pretreated cell.
findings: []
- id: PMID:11807546
title: Structural basis for the activation of anthrax adenylyl cyclase exotoxin
by calmodulin.
findings: []
- id: PMID:11984006
title: The Chediak-Higashi protein interacts with SNARE complex and signal transduction
proteins.
findings: []
- id: PMID:15140941
title: Ca2+-binding protein-1 facilitates and forms a postsynaptic complex with
Cav1.2 (L-type) Ca2+ channels.
findings: []
- id: PMID:15632291
title: Myristoyl moiety of HIV Nef is involved in regulation of the interaction
with calmodulin in vivo.
findings: []
- id: PMID:16760425
title: CP110 cooperates with two calcium-binding proteins to regulate cytokinesis
and genome stability.
findings: []
- id: PMID:19190083
title: 'Characterization of exosome-like vesicles released from human tracheobronchial
ciliated epithelium: a possible role in innate defense.'
findings: []
- id: PMID:19855925
title: Structural analysis of the complex between calmodulin and full-length myelin
basic protein, an intrinsically disordered molecule.
findings: []
- id: PMID:20226167
title: Defective calmodulin binding to the cardiac ryanodine receptor plays a key
role in CPVT-associated channel dysfunction.
findings: []
- id: PMID:20668654
title: Structure of the CaMKIIdelta/calmodulin complex reveals the molecular mechanism
of CaMKII kinase activation.
findings: []
- id: PMID:21167176
title: Solution NMR structure of Apo-calmodulin in complex with the IQ motif of
human cardiac sodium channel NaV1.5.
findings: []
- id: PMID:21299499
title: 'IQ-motif selectivity in human IQGAP2 and IQGAP3: binding of calmodulin and
myosin essential light chain.'
findings: []
- id: PMID:21630459
title: Proteomic characterization of the human sperm nucleus.
findings: []
- id: PMID:22926577
title: Quantitative proteomic analysis of human substantia nigra in Alzheimer's
disease, Huntington's disease and Multiple sclerosis.
findings: []
- id: PMID:23040497
title: Mutations in calmodulin cause ventricular tachycardia and sudden cardiac
death.
findings: []
- id: PMID:27516456
title: Novel CPVT-Associated Calmodulin Mutation in CALM3 (CALM3-A103V) Activates
Arrhythmogenic Ca Waves and Sparks.
findings: []
- id: PMID:3111527
title: 'Comparison of S100b protein with calmodulin: interactions with melittin
and microtubule-associated tau proteins and inhibition of phosphorylation of tau
proteins by protein kinase C.'
findings: []
- id: PMID:31454269
title: Genetic Mosaicism in Calmodulinopathy.
findings: []
- id: PMID:35271311
title: 'OpenCell: Endogenous tagging for the cartography of human cellular organization.'
findings: []
- id: PMID:35568036
title: A family of conserved bacterial virulence factors dampens interferon responses
by blocking calcium signaling.
findings: []
- id: PMID:7607248
title: A calmodulin-binding sequence in the C-terminus of human cardiac titin kinase.
findings: []
- id: PMID:8631777
title: Blocking the Ca2+-induced conformational transitions in calmodulin with disulfide
bonds.
findings: []
- id: Reactome:R-HSA-9956602
title: CALM binds bacterial OspC3
findings: []
- id: Reactome:R-HSA-9956624
title: OspC3 ADP-riboxanates CASP4
findings: []
- id: Reactome:R-HSA-9956667
title: CASP4 binds CALM:OspC3
findings: []
- id: PMID:9681195
title: Characterization of the human CALM2 calmodulin gene and comparison of the
transcriptional activity of CALM1, CALM2 and CALM3.
findings: []
- id: file:human/CALM3/CALM3-notes.md
title: Curator notes for CALM3 review
findings: []
core_functions:
- description: Primary intracellular calcium sensor. CALM3-encoded calmodulin binds
calcium through four EF-hand motifs and converts calcium fluctuations into target-protein
regulation.
molecular_function:
id: GO:0005509
label: calcium ion binding
locations:
- id: GO:0005737
label: cytoplasm
directly_involved_in:
- id: GO:0005513
label: detection of calcium ion
supported_by:
- reference_id: PMID:27516456
supporting_text: Humans have 3 CaM genes ( CALM1 , CALM2 , and CALM3 ) encoding
for a perfectly conserved sequence of amino acids
- reference_id: PMID:23040497
supporting_text: Both CALM1 substitutions demonstrated compromised calcium binding
- description: Core calcium-dependent signal-transduction adaptor for kinase and phosphatase
regulation, especially CaMK and calcineurin pathways.
molecular_function:
id: GO:0043539
label: protein serine/threonine kinase activator activity
locations:
- id: GO:0005737
label: cytoplasm
directly_involved_in:
- id: GO:0097720
label: calcineurin-mediated signaling
supported_by:
- reference_id: PMID:20668654
supporting_text: Structure of the CaMKIIdelta/calmodulin complex reveals the molecular
mechanism of CaMKII kinase activation.
- reference_id: PMID:35568036
supporting_text: IFN inhibition was mediated by the binding of OspC1 and OspC3
to the Ca2+ sensor calmodulin (CaM), blocking CaM kinase II
- reference_id: PMID:8631777
supporting_text: Blocking the Ca2+-induced conformational transitions in calmodulin
with disulfide bonds.
- description: Regulator of cardiac and other excitable-cell calcium channels, especially
RyR2 and high-voltage-gated calcium-channel pathways.
molecular_function:
id: GO:0005246
label: calcium channel regulator activity
locations:
- id: GO:0005737
label: cytoplasm
directly_involved_in:
- id: GO:0010880
label: regulation of release of sequestered calcium ion into cytosol by sarcoplasmic
reticulum
supported_by:
- reference_id: PMID:20226167
supporting_text: the addition of a high concentration of CaM attenuated the aberrant
increase of Ca(2+) sparks
- reference_id: PMID:27516456
supporting_text: A103V-CaM (100 nmol/L) promoted spontaneous Ca wave and spark
activity
- reference_id: PMID:31454269
supporting_text: Human-induced pluripotent stem cell-derived cardiomyocytes overexpressing
mutant or wild-type CaM showed that both mutants impaired Ca2+-dependent inactivation
of L-type Ca2+ channels and prolonged action potential duration
- description: Centrosome-associated regulator of late cytokinesis through CP110/centrin-containing
cell-division machinery.
molecular_function:
id: GO:0019901
label: protein kinase binding
locations:
- id: GO:0005813
label: centrosome
- id: GO:0000922
label: spindle pole
directly_involved_in:
- id: GO:0032465
label: regulation of cytokinesis
supported_by:
- reference_id: PMID:16760425
supporting_text: its depletion leads to a failure at a late stage of cytokinesis
and the formation of binucleate cells